mRNA_Ecto-sp13_S_contig61074.16787.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig61074.16787.1
Unique NamemRNA_Ecto-sp13_S_contig61074.16787.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig61074.16787.1 vs. uniprot
Match: A0A6H5JZJ2_9PHAE (S5A_REDUCTASE domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JZJ2_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 1.650e-14
Identity = 30/33 (90.91%), Postives = 31/33 (93.94%), Query Frame = 1
Query:    1 SGLYRFSRHPNYFGEAVFWTGAWLAAIPAYAKW 99
            +GLYRFSRHPNY GEAVFWTGAWLAAIPAY KW
Sbjct:  289 TGLYRFSRHPNYLGEAVFWTGAWLAAIPAYTKW 321          
BLAST of mRNA_Ecto-sp13_S_contig61074.16787.1 vs. uniprot
Match: UPI000A1753CB (DUF1295 domain-containing protein n=1 Tax=Derxia lacustris TaxID=764842 RepID=UPI000A1753CB)

HSP 1 Score: 54.3 bits (129), Expect = 1.280e-7
Identity = 21/33 (63.64%), Postives = 24/33 (72.73%), Query Frame = 1
Query:    1 SGLYRFSRHPNYFGEAVFWTGAWLAAIPAYAKW 99
            SGL+RFSRHPNYFGE + W G WL A+ A   W
Sbjct:  172 SGLWRFSRHPNYFGECLLWWGLWLVALAAGGAW 204          
BLAST of mRNA_Ecto-sp13_S_contig61074.16787.1 vs. uniprot
Match: A0A2N5WZL4_9GAMM (DUF1295 domain-containing protein n=1 Tax=Pseudohalioglobus lutimaris TaxID=1737061 RepID=A0A2N5WZL4_9GAMM)

HSP 1 Score: 53.9 bits (128), Expect = 1.940e-7
Identity = 22/33 (66.67%), Postives = 25/33 (75.76%), Query Frame = 1
Query:    1 SGLYRFSRHPNYFGEAVFWTGAWLAAIPAYAKW 99
            SGL+RFSRHPNYFGE V W+G  L A+PA   W
Sbjct:  195 SGLWRFSRHPNYFGEIVLWSGVALLALPALQGW 227          
BLAST of mRNA_Ecto-sp13_S_contig61074.16787.1 vs. uniprot
Match: A0A1M7F5N2_9BURK (Steroid 5-alpha reductase family enzyme n=1 Tax=Rhizobacter sp. OV335 TaxID=1500264 RepID=A0A1M7F5N2_9BURK)

HSP 1 Score: 53.5 bits (127), Expect = 2.460e-7
Identity = 21/32 (65.62%), Postives = 23/32 (71.88%), Query Frame = 1
Query:    4 GLYRFSRHPNYFGEAVFWTGAWLAAIPAYAKW 99
            GL+R SRHPNYFGEA  W G WL A+PA   W
Sbjct:  178 GLWRLSRHPNYFGEACAWWGLWLMAVPAGGAW 209          
BLAST of mRNA_Ecto-sp13_S_contig61074.16787.1 vs. uniprot
Match: A0A5C7XKM5_LYSSP (DUF1295 domain-containing protein n=1 Tax=Lysobacter sp. TaxID=72226 RepID=A0A5C7XKM5_LYSSP)

HSP 1 Score: 53.5 bits (127), Expect = 2.470e-7
Identity = 20/32 (62.50%), Postives = 24/32 (75.00%), Query Frame = 1
Query:    4 GLYRFSRHPNYFGEAVFWTGAWLAAIPAYAKW 99
            GL+R+SRHPNYFGEAVFW G W A++     W
Sbjct:  179 GLWRYSRHPNYFGEAVFWWGMWTASVSMGGAW 210          
BLAST of mRNA_Ecto-sp13_S_contig61074.16787.1 vs. uniprot
Match: A0A0Q6LTS4_9BURK (S5A_REDUCTASE domain-containing protein n=1 Tax=Rhizobacter sp. Root29 TaxID=1736511 RepID=A0A0Q6LTS4_9BURK)

HSP 1 Score: 53.5 bits (127), Expect = 2.540e-7
Identity = 21/32 (65.62%), Postives = 23/32 (71.88%), Query Frame = 1
Query:    4 GLYRFSRHPNYFGEAVFWTGAWLAAIPAYAKW 99
            GL+R SRHPNYFGEA  W G WL A+PA   W
Sbjct:  185 GLWRLSRHPNYFGEACAWWGLWLMAVPAGGAW 216          
BLAST of mRNA_Ecto-sp13_S_contig61074.16787.1 vs. uniprot
Match: UPI00168777E7 (DUF1295 domain-containing protein n=1 Tax=Spongiibacter pelagi TaxID=2760804 RepID=UPI00168777E7)

HSP 1 Score: 53.5 bits (127), Expect = 2.550e-7
Identity = 22/32 (68.75%), Postives = 26/32 (81.25%), Query Frame = 1
Query:    4 GLYRFSRHPNYFGEAVFWTGAWLAAIPAYAKW 99
            GL+RFSRHPNYFGE+V W G +LAAIP+   W
Sbjct:  178 GLWRFSRHPNYFGESVIWWGLFLAAIPSGQWW 209          
BLAST of mRNA_Ecto-sp13_S_contig61074.16787.1 vs. uniprot
Match: A0A831PF17_9BACT (DUF1295 domain-containing protein n=1 Tax=Candidatus Aminicenantes bacterium TaxID=2052149 RepID=A0A831PF17_9BACT)

HSP 1 Score: 53.1 bits (126), Expect = 3.390e-7
Identity = 19/33 (57.58%), Postives = 25/33 (75.76%), Query Frame = 1
Query:    1 SGLYRFSRHPNYFGEAVFWTGAWLAAIPAYAKW 99
            SGL+++SRHPNYFGE + W G WL A+P  + W
Sbjct:  168 SGLWKYSRHPNYFGEMLVWWGIWLTALPRLSGW 200          
BLAST of mRNA_Ecto-sp13_S_contig61074.16787.1 vs. uniprot
Match: A0A6N8Y981_9ACTN (DUF1295 domain-containing protein n=9 Tax=Bacteria TaxID=2 RepID=A0A6N8Y981_9ACTN)

HSP 1 Score: 52.8 bits (125), Expect = 4.710e-7
Identity = 20/32 (62.50%), Postives = 25/32 (78.12%), Query Frame = 1
Query:    4 GLYRFSRHPNYFGEAVFWTGAWLAAIPAYAKW 99
            GL+R+SRHPNYFG++V W G WL A+ A A W
Sbjct:  176 GLWRYSRHPNYFGDSVVWWGIWLVAVAAGAWW 207          
BLAST of mRNA_Ecto-sp13_S_contig61074.16787.1 vs. uniprot
Match: A0A7W0NJQ8_9ACTN (DUF1295 domain-containing protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7W0NJQ8_9ACTN)

HSP 1 Score: 52.4 bits (124), Expect = 5.890e-7
Identity = 19/33 (57.58%), Postives = 25/33 (75.76%), Query Frame = 1
Query:    1 SGLYRFSRHPNYFGEAVFWTGAWLAAIPAYAKW 99
            +GL+R++RHPNYFG+A  W G WL A+ A A W
Sbjct:  157 TGLWRYTRHPNYFGDATVWWGLWLVAVAAGAPW 189          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig61074.16787.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JZJ2_9PHAE1.650e-1490.91S5A_REDUCTASE domain-containing protein n=2 Tax=Ec... [more]
UPI000A1753CB1.280e-763.64DUF1295 domain-containing protein n=1 Tax=Derxia l... [more]
A0A2N5WZL4_9GAMM1.940e-766.67DUF1295 domain-containing protein n=1 Tax=Pseudoha... [more]
A0A1M7F5N2_9BURK2.460e-765.63Steroid 5-alpha reductase family enzyme n=1 Tax=Rh... [more]
A0A5C7XKM5_LYSSP2.470e-762.50DUF1295 domain-containing protein n=1 Tax=Lysobact... [more]
A0A0Q6LTS4_9BURK2.540e-765.63S5A_REDUCTASE domain-containing protein n=1 Tax=Rh... [more]
UPI00168777E72.550e-768.75DUF1295 domain-containing protein n=1 Tax=Spongiib... [more]
A0A831PF17_9BACT3.390e-757.58DUF1295 domain-containing protein n=1 Tax=Candidat... [more]
A0A6N8Y981_9ACTN4.710e-762.50DUF1295 domain-containing protein n=9 Tax=Bacteria... [more]
A0A7W0NJQ8_9ACTN5.890e-757.58DUF1295 domain-containing protein n=1 Tax=Actinomy... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig61074contigEcto-sp13_S_contig61074:702..803 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score76.3
Seed ortholog evalue3.2e-12
Seed eggNOG ortholog2880.D8LD60
Model size102
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.oxidoreductase activity, acting on the CH-CH group of donors
EggNOG OGsCOG3752@1,KOG4650@2759
Cds size102
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463851.6058133-CDS-Ecto-sp13_S_contig61074:701..8031681463851.6058133-CDS-Ecto-sp13_S_contig61074:701..803Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig61074 702..803 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig61074.16787.1prot_Ecto-sp13_S_contig61074.16787.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig61074 702..803 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig61074.16787.1

>prot_Ecto-sp13_S_contig61074.16787.1 ID=prot_Ecto-sp13_S_contig61074.16787.1|Name=mRNA_Ecto-sp13_S_contig61074.16787.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=34bp
SGLYRFSRHPNYFGEAVFWTGAWLAAIPAYAKW*
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mRNA from alignment at Ecto-sp13_S_contig61074:702..803+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig61074.16787.1 ID=mRNA_Ecto-sp13_S_contig61074.16787.1|Name=mRNA_Ecto-sp13_S_contig61074.16787.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=102bp|location=Sequence derived from alignment at Ecto-sp13_S_contig61074:702..803+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGCGGCCTCTACCGCTTTTCACGCCACCCCAACTACTTCGGGGAGGCCGT TTTCTGGACCGGGGCCTGGCTGGCCGCGATCCCTGCGTATGCTAAGTGGT GA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig61074:702..803+

>mRNA_Ecto-sp13_S_contig61074.16787.1 ID=mRNA_Ecto-sp13_S_contig61074.16787.1|Name=mRNA_Ecto-sp13_S_contig61074.16787.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=102bp|location=Sequence derived from alignment at Ecto-sp13_S_contig61074:702..803+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGCGGCCTCTACCGCTTTTCACGCCACCCCAACTACTTCGGGGAGGCCGT
TTTCTGGACCGGGGCCTGGCTGGCCGCGATCCCTGCGTATGCTAAGTGGT
GA
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