mRNA_Ecto-sp13_S_contig6080.16738.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6080.16738.1
Unique NamemRNA_Ecto-sp13_S_contig6080.16738.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig6080.16738.1 vs. uniprot
Match: A0A8K0SGE5_9HYPO (Cellobiohydrolase II n=1 Tax=Stachybotrys elegans TaxID=80388 RepID=A0A8K0SGE5_9HYPO)

HSP 1 Score: 77.4 bits (189), Expect = 2.400e-15
Identity = 28/39 (71.79%), Postives = 31/39 (79.49%), Query Frame = 1
Query:   25 ENCAGEWGQCGGNQWQGPTCCEEGNDCVVGNEWYHQCIP 141
            ++C   WGQCGGN WQGPTCC  G+ CVV NEWYHQCIP
Sbjct:   28 QSCGTAWGQCGGNNWQGPTCCASGSSCVVVNEWYHQCIP 66          
BLAST of mRNA_Ecto-sp13_S_contig6080.16738.1 vs. uniprot
Match: A0A0G4GJU6_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4GJU6_9ALVE)

HSP 1 Score: 74.3 bits (181), Expect = 2.970e-14
Identity = 27/41 (65.85%), Postives = 31/41 (75.61%), Query Frame = 1
Query:   28 NCAGEWGQCGGNQWQGPTCCEEGNDCVVGNEWYHQCIPETT 150
            +CA  WGQCGG  W GP CCE G++CVVGN WY QC+P TT
Sbjct:  348 SCASLWGQCGGQGWTGPICCESGSECVVGNPWYSQCVPPTT 388          
BLAST of mRNA_Ecto-sp13_S_contig6080.16738.1 vs. uniprot
Match: A0A0G4HRU4_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4HRU4_9ALVE)

HSP 1 Score: 72.0 bits (175), Expect = 1.930e-13
Identity = 26/44 (59.09%), Postives = 30/44 (68.18%), Query Frame = 1
Query:   19 PEENCAGEWGQCGGNQWQGPTCCEEGNDCVVGNEWYHQCIPETT 150
            P  +C+  WGQCGG  W GPTCCE G+ C  GN WY QC+P TT
Sbjct:  343 PSGDCSALWGQCGGQNWSGPTCCESGSVCQFGNPWYSQCVPPTT 386          
BLAST of mRNA_Ecto-sp13_S_contig6080.16738.1 vs. uniprot
Match: A0A8K0SS85_9HYPO (Family 11 glycosyl hydrolase n=1 Tax=Stachybotrys elegans TaxID=80388 RepID=A0A8K0SS85_9HYPO)

HSP 1 Score: 70.9 bits (172), Expect = 2.630e-13
Identity = 25/46 (54.35%), Postives = 30/46 (65.22%), Query Frame = 1
Query:    1 RPAEPTPEENCAGEWGQCGGNQWQGPTCCEEGNDCVVGNEWYHQCI 138
            +P  P    +C+  WGQCGG  W GPTCCE G+ C V N+WY QCI
Sbjct:  240 QPTNPPTNPSCSARWGQCGGQGWSGPTCCESGSTCTVSNQWYSQCI 285          
BLAST of mRNA_Ecto-sp13_S_contig6080.16738.1 vs. uniprot
Match: A0A084QYV3_STAC4 (Glucanase n=3 Tax=Stachybotrys TaxID=74721 RepID=A0A084QYV3_STAC4)

HSP 1 Score: 71.2 bits (173), Expect = 3.590e-13
Identity = 28/46 (60.87%), Postives = 29/46 (63.04%), Query Frame = 1
Query:    4 PAEPTPEENCAGEWGQCGGNQWQGPTCCEEGNDCVVGNEWYHQCIP 141
            P E    + CA  W QCGGN W G TCC  GN C V NEWYHQCIP
Sbjct:   20 PLEVEERQACASVWSQCGGNNWNGATCCTSGNTCSVINEWYHQCIP 65          
BLAST of mRNA_Ecto-sp13_S_contig6080.16738.1 vs. uniprot
Match: T2B3P8_9PEZI (Glucanase n=1 Tax=Corynascus sepedonium TaxID=190048 RepID=T2B3P8_9PEZI)

HSP 1 Score: 70.9 bits (172), Expect = 4.900e-13
Identity = 29/47 (61.70%), Postives = 32/47 (68.09%), Query Frame = 1
Query:    7 AEPTPEE--NCAGEWGQCGGNQWQGPTCCEEGNDCVVGNEWYHQCIP 141
            A P  EE  NCA  WGQCGGN WQG TCC  G+ CV  N+WY QC+P
Sbjct:   17 AAPVIEERQNCASVWGQCGGNGWQGATCCASGSSCVAQNQWYSQCLP 63          
BLAST of mRNA_Ecto-sp13_S_contig6080.16738.1 vs. uniprot
Match: G2QA39_MYCTT (Glucanase n=1 Tax=Myceliophthora thermophila (strain ATCC 42464 / BCRC 31852 / DSM 1799) TaxID=573729 RepID=G2QA39_MYCTT)

HSP 1 Score: 70.5 bits (171), Expect = 6.700e-13
Identity = 29/49 (59.18%), Postives = 32/49 (65.31%), Query Frame = 1
Query:    7 AEPTPEE--NCAGEWGQCGGNQWQGPTCCEEGNDCVVGNEWYHQCIPET 147
            A P  EE  NC   W QCGGN WQGPTCC  G+ CV  NEWY QC+P +
Sbjct:   17 AAPVIEERQNCGAVWTQCGGNGWQGPTCCASGSTCVAQNEWYSQCLPNS 65          
BLAST of mRNA_Ecto-sp13_S_contig6080.16738.1 vs. uniprot
Match: A0A8K0PNI6_9PEZI (Glycoside hydrolase family 6 protein n=1 Tax=Chaetomium sp. MPI-SDFR-AT-0129 TaxID=2823209 RepID=A0A8K0PNI6_9PEZI)

HSP 1 Score: 69.3 bits (168), Expect = 1.710e-12
Identity = 28/47 (59.57%), Postives = 32/47 (68.09%), Query Frame = 1
Query:    7 AEPTPEE--NCAGEWGQCGGNQWQGPTCCEEGNDCVVGNEWYHQCIP 141
            A P  EE  NC  +W QCGGN WQG TCC+ G+ CV  N+WY QCIP
Sbjct:   17 AVPVVEERQNCGSQWSQCGGNGWQGATCCQSGSTCVKQNDWYFQCIP 63          
BLAST of mRNA_Ecto-sp13_S_contig6080.16738.1 vs. uniprot
Match: A0A7S0FTC9_9DINO (Hypothetical protein n=2 Tax=Pyrodinium bahamense TaxID=73915 RepID=A0A7S0FTC9_9DINO)

HSP 1 Score: 69.3 bits (168), Expect = 1.720e-12
Identity = 25/37 (67.57%), Postives = 28/37 (75.68%), Query Frame = 1
Query:   31 CAGEWGQCGGNQWQGPTCCEEGNDCVVGNEWYHQCIP 141
            C+  WGQCGG QW G TCCE G+ C V NEWYHQC+P
Sbjct:  259 CSEAWGQCGGKQWSGYTCCESGSYCKVTNEWYHQCVP 295          
BLAST of mRNA_Ecto-sp13_S_contig6080.16738.1 vs. uniprot
Match: A0A3N2Q8R3_9PEZI (CBM1 domain-containing protein n=1 Tax=Sodiomyces alkalinus F11 TaxID=1314773 RepID=A0A3N2Q8R3_9PEZI)

HSP 1 Score: 68.9 bits (167), Expect = 2.310e-12
Identity = 28/47 (59.57%), Postives = 31/47 (65.96%), Query Frame = 1
Query:    7 AEPTPEE--NCAGEWGQCGGNQWQGPTCCEEGNDCVVGNEWYHQCIP 141
            A PT EE  NC+G WGQCGG  W GPTCC  G+ C   N WY QC+P
Sbjct:   23 AAPTLEERQNCSGLWGQCGGENWSGPTCCASGSTCEFQNPWYSQCLP 69          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6080.16738.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8K0SGE5_9HYPO2.400e-1571.79Cellobiohydrolase II n=1 Tax=Stachybotrys elegans ... [more]
A0A0G4GJU6_9ALVE2.970e-1465.85Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]
A0A0G4HRU4_9ALVE1.930e-1359.09Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]
A0A8K0SS85_9HYPO2.630e-1354.35Family 11 glycosyl hydrolase n=1 Tax=Stachybotrys ... [more]
A0A084QYV3_STAC43.590e-1360.87Glucanase n=3 Tax=Stachybotrys TaxID=74721 RepID=A... [more]
T2B3P8_9PEZI4.900e-1361.70Glucanase n=1 Tax=Corynascus sepedonium TaxID=1900... [more]
G2QA39_MYCTT6.700e-1359.18Glucanase n=1 Tax=Myceliophthora thermophila (stra... [more]
A0A8K0PNI6_9PEZI1.710e-1259.57Glycoside hydrolase family 6 protein n=1 Tax=Chaet... [more]
A0A7S0FTC9_9DINO1.720e-1267.57Hypothetical protein n=2 Tax=Pyrodinium bahamense ... [more]
A0A3N2Q8R3_9PEZI2.310e-1259.57CBM1 domain-containing protein n=1 Tax=Sodiomyces ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6080contigEcto-sp13_S_contig6080:283..435 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeFungi
Stop1
Start0
Seed ortholog score70.9
Seed ortholog evalue2e-10
Seed eggNOG ortholog78579.XP_003661032.1
Preferred namecbhC
Model size153
KEGG rclassRC00799
KEGG koko:K19668
KEGG ReactionR02886,R11308
KEGG Pathwayko00500,ko01100,ko02020,map00500,map01100,map02020
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000272,GO:0003674,GO:0003824,GO:0004553,GO:0005975,GO:0005976,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009251,GO:0016052,GO:0016162,GO:0016787,GO:0016798,GO:0043170,GO:0044042,GO:0044238,GO:0071704,GO:1901575
Exons1
EggNOG free text desc.Belongs to the glycosyl hydrolase family 6
EggNOG OGs21499@147550,2QWHE@2759,39RNX@33154,3HADI@35718,3NXS8@4751,3QMEP@4890,3UAEX@5139,COG5297@1
EC3.2.1.91
Cds size153
COG Functional cat.G
CAZyGH6
Best tax levelChaetomiaceae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463847.5460322-CDS-Ecto-sp13_S_contig6080:282..4351681463847.5460322-CDS-Ecto-sp13_S_contig6080:282..435Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6080 283..435 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6080.16738.1prot_Ecto-sp13_S_contig6080.16738.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6080 283..435 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6080.16738.1

>prot_Ecto-sp13_S_contig6080.16738.1 ID=prot_Ecto-sp13_S_contig6080.16738.1|Name=mRNA_Ecto-sp13_S_contig6080.16738.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=51bp
RPAEPTPEENCAGEWGQCGGNQWQGPTCCEEGNDCVVGNEWYHQCIPETT
*
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mRNA from alignment at Ecto-sp13_S_contig6080:283..435+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6080.16738.1 ID=mRNA_Ecto-sp13_S_contig6080.16738.1|Name=mRNA_Ecto-sp13_S_contig6080.16738.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=153bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6080:283..435+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGCCCGGCTGAGCCTACCCCTGAGGAAAACTGCGCTGGAGAGTGGGGCCA ATGCGGCGGAAATCAGTGGCAGGGACCGACCTGCTGTGAGGAAGGCAACG ACTGCGTCGTTGGCAACGAGTGGTACCACCAGTGCATTCCAGAGACGACT TGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6080:283..435+

>mRNA_Ecto-sp13_S_contig6080.16738.1 ID=mRNA_Ecto-sp13_S_contig6080.16738.1|Name=mRNA_Ecto-sp13_S_contig6080.16738.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=153bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6080:283..435+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGCCCGGCTGAGCCTACCCCTGAGGAAAACTGCGCTGGAGAGTGGGGCCA
ATGCGGCGGAAATCAGTGGCAGGGACCGACCTGCTGTGAGGAAGGCAACG
ACTGCGTCGTTGGCAACGAGTGGTACCACCAGTGCATTCCAGAGACGACT
TGA
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