mRNA_Ecto-sp13_S_contig6068.16718.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6068.16718.1
Unique NamemRNA_Ecto-sp13_S_contig6068.16718.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig6068.16718.1 vs. uniprot
Match: A0A6H5LEQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LEQ8_9PHAE)

HSP 1 Score: 564 bits (1453), Expect = 2.460e-201
Identity = 284/294 (96.60%), Postives = 291/294 (98.98%), Query Frame = 3
Query:  228 SGSRMLWLVNVVAYLINAVVVGGSNFGWWGATNAEVSDDNPTFVTPNGWAFSIWGVIFFFEAVFVIWGAFRSNRDSRVVQEGVGCWFAIACLVQAAWSIVFAQELLIVSAILLCLITLSLTMAVISLSLIQYEEGITVFTLPFWGVYFPIGLHGGWTLAAAIVNINVALELRGDTGSELAALILSLVGAALGAAFVSLVFHNQPYLLAVAWAIAGIASKEDYRFVQLGKDLSDGVNVALQGLWIGLLCIGVLGILAGVRQMNRAEAEVIDKRRPIPSAPGNPADRDLTSAIYSA 1109
            SGSRMLWLVNV+AYLINAVVVGGSNFGWWGATNAEVSDDNPTFVTPNGWAFSIWGVIFFFEAVFVIWGAFRSNRDSRVVQEGVGCWFAIACL+QAAWSIVFAQELLIVSAILLCLITLSLT+AVISLSLIQ EEGIT+FTLPFWGVYFPIGLHGGWTLAAAIVNINVALELRGDTGSELAALILSLVGAALGAAF+SLVFHNQPYLLAVAWAIAGIASK+DYRFVQLGKDLSDGVNVALQGLWIGLLCIGVLGIL GVRQMNRAEAEVI KRRPIPSAPGNPADRDLTSAIYS+
Sbjct:    7 SGSRMLWLVNVLAYLINAVVVGGSNFGWWGATNAEVSDDNPTFVTPNGWAFSIWGVIFFFEAVFVIWGAFRSNRDSRVVQEGVGCWFAIACLIQAAWSIVFAQELLIVSAILLCLITLSLTLAVISLSLIQCEEGITLFTLPFWGVYFPIGLHGGWTLAAAIVNINVALELRGDTGSELAALILSLVGAALGAAFISLVFHNQPYLLAVAWAIAGIASKQDYRFVQLGKDLSDGVNVALQGLWIGLLCIGVLGILVGVRQMNRAEAEVIHKRRPIPSAPGNPADRDLTSAIYSS 300          
BLAST of mRNA_Ecto-sp13_S_contig6068.16718.1 vs. uniprot
Match: A0A835ZJ92_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJ92_9STRA)

HSP 1 Score: 182 bits (461), Expect = 2.330e-51
Identity = 103/248 (41.53%), Postives = 148/248 (59.68%), Query Frame = 3
Query:  255 NVVAYLINAVVVGGSNFGWWGATNAEVSDDNPTFVTPNGWAFSIWGVIFFFEAVFVIWGAFRSNRDSRVVQEGVGCWFAIACLVQAAWSIVFAQELLIVSAILLCLITLSLTMAVISLSLIQYEEGITVFTLPFWGVYFPIGLHGGWTLAAAIVNINVALELRGDTGSELAALILSLVGAALGAAFVSLVFHNQPYLLAVAWAIAGIASKED-YRFVQLGKDLSDGVNVALQGLWIGLLCIGVLGILA 995
            NVVA+ +N  VVG SNFG WG TN +VSD  PT  TP  +AFSIWG+IF  E   V+W A   N  +  V++G+G WFA AC++QA WSI FAQE L +SA++L  I + L  A  +L+  +   G   F      ++ PIGLH GWT AAA+VNIN+A        +++ A I+++       A   +V  +  +L AV WA+A I + +  YR   LGK+++ G+  A+  +W+GLL + V+ + A
Sbjct:   37 NVVAFALNFAVVGASNFGLWGKTNKDVSDSIPTLTTPAAYAFSIWGLIFTSETALVVWQALPRNAGNLAVKQGLGPWFAAACVLQAVWSIAFAQEALTLSAVILVGIAVCLGKASANLAGFR-ARGAAWFDHLI--LHAPIGLHAGWTCAAALVNINLAAAQTSGVAAQVTAAIVTVFAXXXXXAVYGVVLLDPAFLAAVVWALAAIVANDGGYRDALLGKEVARGLTGAITVIWVGLLALQVVAVAA 281          
BLAST of mRNA_Ecto-sp13_S_contig6068.16718.1 vs. uniprot
Match: A0A7S3UTX0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UTX0_HETAK)

HSP 1 Score: 141 bits (356), Expect = 6.990e-36
Identity = 81/230 (35.22%), Postives = 133/230 (57.83%), Query Frame = 3
Query:  255 NVVAYLINAVVVGGSNFGWWGATNAEVSDDNPTFVTPNGWAFSIWGVIFFFEAVFVIWGAFRSNRDSRVVQEGVGCWFAIACLVQAAWSIVFAQELLIVSAILLCLITLSLTMAVISLSLIQYEEGITVFTLPFWGVYFPIGLHGGWTLAAAIVNINVALELRG-DTGSELAALILSLVGAALGAAFVSLVFHNQPYLLAVAWAIAGIASKEDYRFVQLGKDLSDGVNVA 941
            NV+A+++N  +  G+N   +G +  E+SD+  T +TP GWAFSIWGVIF  E VF  W  F+S+ D+ ++ E VG ++  ACL Q+AW++  A +L +VSA++L  I +SL  A+I L +   E         ++ V F  GLHGGWT  A +++ N+A    G     +L   I+SL      + +  +   N  Y LA+ WA+ GI+S++    + LG ++++ + ++
Sbjct:   21 NVLAFILNCSLTFGNNGFGYGKSIEEISDEYQTIITPPGWAFSIWGVIFALEFVFTAWQLFQSS-DNLILNEVVGFFWVSACLFQSAWNLTIAAQLFVVSALVLAGIAISL--AIICLRITPKEMNQHETVAEYFLVRFSFGLHGGWTCVATLLSFNLAAVANGVSPKGQLVVAIISLAVVVAASLYFGMFKDNLSYSLAICWALFGISSEQGQTSMILGPEIANHIRIS 247          
BLAST of mRNA_Ecto-sp13_S_contig6068.16718.1 vs. uniprot
Match: A0A7S2V2F8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V2F8_9STRA)

HSP 1 Score: 137 bits (344), Expect = 4.180e-34
Identity = 93/248 (37.50%), Postives = 133/248 (53.63%), Query Frame = 3
Query:  240 MLWLVNVVAYLINAVVVGGSNFGWWGATNAEVSDDNPTFVTPNGWAFS-IWGVIFFFEAVFVIWGAFRSNRDSRVVQEGVGCWFAIACLVQAAWSIVFAQELLIVSAILLCLITLSLTMAVISLSLIQYEEGITVFTLPFWG----VYFPIGLHGGWTLAAAIVNINVALELRGDTG-SELAALILSLVGAALGAAFVSLVFHNQPYLLAVAWAIAGIASKEDYRFVQLGKDLSDGVNVALQGLWIGL 965
            +L  VNVVA+  N V+    + G  G +N EVS+   T +TP GWAF  IW +IF  EA FVIW    + R +  +  G+G WFA AC++Q  W I FA E ++ SA+LL  I  SL  A   L+ ++        +   WG    V+ P+GLHGGWTLAA +VN+++A+ + G +  ++L    +SL  AA+G    S   H   Y LAVAW +  I   +     +LG+D +  +      L I L
Sbjct:   19 LLVFVNVVAFCFNVVITFLPS-GVIGKSNEEVSNQYETIITPAGWAFGPIWAIIFILEAAFVIWQCLPTARGNPWIL-GIGFWFAAACILQGCWGIAFAAEKIVASAVLLLGIAASLAFACSELTKLRKSAEAPELS---WGRYVVVWLPLGLHGGWTLAAGLVNVSLAVYVEGASAQAQLVVAAVSLGIAAVGGLVASRQMHAA-YSLAVAWGLLAIGLNQATTRERLGEDTAQALEYTSVALAIVL 260          
BLAST of mRNA_Ecto-sp13_S_contig6068.16718.1 vs. uniprot
Match: A0A7S2LGL1_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LGL1_9STRA)

HSP 1 Score: 134 bits (337), Expect = 6.690e-33
Identity = 92/260 (35.38%), Postives = 140/260 (53.85%), Query Frame = 3
Query:  249 LVNVVAYLINAVVVGGSNFGWWGA--TNAEVSDDNPTFVTPNGWAFSIWGVIFFFEAVFVIWGAFRSNRDSRVVQEGVGCWFAIACLVQAAWSIVFAQELLIVSAILLCLITLSLTMAVISLSLIQYEEGITVFTLPFWG---VYFPIGLHGGWTLAAAIVNINVALELRG-DTGSELAALILSLVGAALGAAFVSLVFHNQPYLLAV--AWAIAGIASKEDYRFVQLGKDLSDGVNVALQG--LW-----IGLLCIGVL 983
            ++N VAY++N +V  G      G    N+E+SD  PT +TP GWAFSIW +IF  +AVF++   F+  R   +VQ+GVG W+   C+ QA WSI F  E++ +S +L+  I +SL   ++S    QY+    +    FW    + FP  +H GW +AA  +NI+V L     D  S+L+A ILS+      A +  L   +  Y++AV  AWA AGI+S+      ++ +     V  AL+    W     + +LCI V+
Sbjct:   46 ILNAVAYVVNLIVTYGIGVLGIGGLPNNSELSDKYPTLITPAGWAFSIWAIIFISQAVFIVAQCFKKYRAHPLVQDGVGYWYVGTCISQAGWSIAFGYEVIWLSLVLMIAILISLVGLLVS----QYK----LKPGNFWDYVILCFPFAIHCGWIIAATFLNISVLLVSEDVDATSQLSAAILSVAALLSLAVYTLLALSSPEYVVAVVLAWANAGISSELSDPPTEIREHFDSVVTDALENSVTWAYAIILAILCITVI 297          
BLAST of mRNA_Ecto-sp13_S_contig6068.16718.1 vs. uniprot
Match: A0A0G4FPA6_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4FPA6_9ALVE)

HSP 1 Score: 120 bits (302), Expect = 7.670e-28
Identity = 97/288 (33.68%), Postives = 147/288 (51.04%), Query Frame = 3
Query:  255 NVVAYLINAVVVGGSNFGWWGATNAEVSDDNPTFVTPNGWAFSIWGVIFFFEAVFVIWGAFRSNRDSRVVQEGVGCWFAIACLVQAAWSIVFAQELLIVSAILLCLITLSLTMAVISL------SLIQYEEGITVFTLPFWGVYFPIGLHGGWTLAAAIVNINVAL--ELRGDTGSE--LAALILSLVGAALGAAFVSLVFHN---QPYLLAVA-WAIAGIASK---------EDYRFVQLGKDLSDGVNVALQGLWIGLLCIGVLGILAGVRQMNRAEAEVIDKRRP 1049
            N+VA+++NAV+V  SN G +G TNAE S    T +TP G+AFSIWG+I+  E ++ I+  F     S+++ EGV  W     + Q  W+I FA++ +I SA+LL +I +SL   V+SL       + +  E   +  L +W    P G+H GW  AAAI+N N+    +  G  G++  L+  ILSL     GA+ +  + +    +P + AVA WA A I+S+         E + F   G  +   +   L GL   L  + V GI   V    R   E   + +P
Sbjct:    9 NLVAFILNAVLVNLSNTGIYGPTNAEQSAKYSTVITPAGYAFSIWGLIYITEGIWAIYQMFPPVSRSKLLSEGVSFWQISMSVFQVLWTIAFARDWIIASAVLLLMIWVSLVGLVVSLFRFRTGEVDKSGEKREISLLNYWIFCVPFGIHLGWVTAAAILNWNIVTVAQAGGPDGAQQQLSVAILSLA-LVFGASLIFTLGNRAVTEPAVPAVAIWAAAAISSQLQNPPQMVVEVFGFS--GPLIFHSLQSVLLGLQYLLAAVFVFGIAKNVLGWTRGRMEAQQRAQP 293          
BLAST of mRNA_Ecto-sp13_S_contig6068.16718.1 vs. uniprot
Match: A0A812RS49_9DINO (Hypothetical protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812RS49_9DINO)

HSP 1 Score: 120 bits (301), Expect = 7.680e-28
Identity = 85/263 (32.32%), Postives = 136/263 (51.71%), Query Frame = 3
Query:  228 SGSRMLWLVNVVAYLINAVVVGGSNFGWWGATNAEVSDDNPTFVTPNGWAFSIWGVIFFFEAVFVIWGAFRSNRDSRVVQEGVGCWFAIACLVQAAWSIVFAQELLIVSAILLCLITLSLTMAVISLSLIQYEEGITVFTLPFWGVYFPIGLHGGWTLAAAIVNINVALEL-RGDTGSELAALILSLVG-AALGAAFVSLVFHNQPYLLAVA-WAIAG----IASKEDYRFVQLGKDLSDGVNVALQGLWIGLLCIGVLGILA 995
            SGS M+ +VN+ AYL+N  +  GS  G +G TN  +S    T +TP+G+AFSIWG+IF +E +F +   F S R S+VV   +  W+  ACL Q AW++ FAQE++I +   +  I +SL + ++ +  ++        T  +W +  P  +H GW +AA  +NI V  +  RG     LA  ++   G +A+   F        P +  VA WA+ G    +AS E  R   +  +  D     + G+ I    + +L ++A
Sbjct:    6 SGSCMINIVNLAAYLVNLGITYGSLTGAFGPTNTNLSAKYHTLITPSGFAFSIWGIIFIWEGIFTVAQLFPSYRSSKVVTT-ITPWWLAACLFQCAWTLFFAQEVMIGAMACMLGILISLMVGILRMDFLEEMS-----TWEYWLLRAPFSVHTGWIVAATSLNICVVADFYRGPPEVMLALAMVCFAGISAIVTVFTFASPKADPIVALVACWALLGMVAELASAEKLRDASVRWNFFDWPQYVISGVRIAAFLLSLLCMVA 262          
BLAST of mRNA_Ecto-sp13_S_contig6068.16718.1 vs. uniprot
Match: A0A7S2U694_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U694_9STRA)

HSP 1 Score: 118 bits (296), Expect = 7.860e-27
Identity = 90/279 (32.26%), Postives = 143/279 (51.25%), Query Frame = 3
Query:  252 VNVVAYLINAVVVGG-SNFGWWG-ATNAEVSDDNPTFVTPNGWAFSIWGVIFFFEAVFVIWGAFRSNRDSRVVQEGVGCWFAIACLVQAAWSIVFAQELLIVSAILLCLITLSLTMAVISLSLIQYEE----GITVFTLPFWGVYFPIGLHGGWTLAAAIVNINVALELRGDTGS-ELAALILSLVGAALGAAFVSLVFH-----NQPYLLAVAWAIAGIASK----EDYRFVQLGKDLSDGVNVALQGL-WIGLLCIGVLGILAGV---RQMNRAEAE 1028
            +NV AY +N +   G  N GW+G  TN+E+S+   T +TP G AFSIWG+IF F+A+F +       R +R+VQ GV  W+   C+ Q  W+  FA E++ +S   +  I +SL   + S   ++  +     +  +   FW   FP  +HGGW  AA  +N+NVA+   G +G  +LA  I+SL  A L A  V ++F+     N      ++WA   I S+    +D       +   +GV +A + + +I    + +  I+AGV   R +N   +E
Sbjct:   42 LNVFAYGVNVLFTFGIGNAGWFGNGTNSELSEKYQTIITPRGTAFSIWGLIFMFQAIFCVVQLLPRYRGTRMVQNGVSYWWTAVCVTQVGWTFAFAYEVIPLSLFFMLCIWVSLMGLLYSQYYLEVSDIQNGSLLSWLAEFWLFQFPFCIHGGWITAALALNMNVAVVNSGASGDVQLAVGIISL--AVLHAVSVWVLFNLGRKPNYTIACVLSWANGWIYSELQNPKDLIVATFTQQTINGVALAARAVAYIIFFQVVIRVIIAGVQKYRDINNTPSE 318          
BLAST of mRNA_Ecto-sp13_S_contig6068.16718.1 vs. uniprot
Match: A0A7S1GWJ3_HEMAN (Hypothetical protein (Fragment) n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1GWJ3_HEMAN)

HSP 1 Score: 112 bits (279), Expect = 7.940e-25
Identity = 74/217 (34.10%), Postives = 123/217 (56.68%), Query Frame = 3
Query:  255 NVVAYLINAVVVGGSNFGWWGATNAEVSDDNPTFVTPNGWAFSIWGVIFFFEAVFVIWGAFRSN--RDSRVVQEGVGCWFAIACLVQAAWSIVFAQELLIVSAILLCLITLSLTMAVISLSLIQYEEGITVFTLP--FWGVY-FPIGLHGGWTLAAAIVNINVALELR-GDTGSELAALILSLVGAALGAAFVSLVFHNQP-YLLAVAWAIAGIASK 884
            +  AY +N  +V  S FGW+GATN+E+S    T+VTP GWAFSIW  IF  + +F ++    S     S VV+     W + A + Q  W+ +FAQ+L+++S  LL ++ + L++AV+   L+Q E G  VF+     W ++  P  +H GW   A+++N+NV +        S+LAA +++L G    +++ +LV   +  +   VAWA+  + S+
Sbjct:   24 SAAAYAVNCFIVQTSMFGWYGATNSELSRKYQTYVTPAGWAFSIWSYIFLSQLIFTVYTLLSSAPAHCSAVVKAIWLPWIS-AQICQVLWTFIFAQDLILLS--LLAMVGIYLSLAVVVYKLLQIERGTKVFSHSPGTWALFHLPFLVHFGWISCASLINVNVVMRAHLFSMESQLAAAVVTL-GCVAISSYSALVLRGEAAHAFVVAWALYALNSQ 236          
BLAST of mRNA_Ecto-sp13_S_contig6068.16718.1 vs. uniprot
Match: A0A7S1YFE7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1YFE7_9STRA)

HSP 1 Score: 111 bits (277), Expect = 1.270e-24
Identity = 80/219 (36.53%), Postives = 116/219 (52.97%), Query Frame = 3
Query:  252 VNVVAYLINAVVVGG-SNFGWWGAT-NAEVSDDNPTFVTPNGWAFSIWGVIFFFEAVFVIWGAFRSNRDSRVVQEGVGCWFAIACLVQAAWSIVFAQELLIVSAILLCLITLSLTMAVISLSLIQYEEGITVFTLP-FWGVYFPIGLHGGWTLAAAIVNINV-ALELRGDTGSELAALILSLVGAALGAAFVSLVFH----NQPYLLAVAWAIAGIASK 884
            +NV+ Y++N V+  G    GW G   N E+S+   T VTP G AFSIWG+IF F+A+FV+       R   +VQ+GVG W+   C  QAAW+  FA E++ + A++  +      +A++        EG    TL  FW + FP  +H GW  AA+ +N+NV A+        +LA  I+SL  A L A  V +VF     N    L ++WA   I S+
Sbjct:   24 LNVIFYILNTVITFGIGTLGWTGTPDNGELSEKYQTLVTPKGTAFSIWGIIFIFQAIFVVVQLLPRFRAKAMVQDGVGYWYIATCAFQAAWTFAFAYEIIWL-ALIFIIXXXXXXVAIVYYQYYLPSEG----TLSEFWLLRFPFMIHCGWLTAASTLNVNVQAVASNAAPEIQLAMGIISL--AYLHAVSVWVVFGLTRPNYTIALVISWASGWIYSE 235          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6068.16718.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LEQ8_9PHAE2.460e-20196.60Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZJ92_9STRA2.330e-5141.53Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S3UTX0_HETAK6.990e-3635.22Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2V2F8_9STRA4.180e-3437.50Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2LGL1_9STRA6.690e-3335.38Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A0G4FPA6_9ALVE7.670e-2833.68Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]
A0A812RS49_9DINO7.680e-2832.32Hypothetical protein n=1 Tax=Symbiodinium natans T... [more]
A0A7S2U694_9STRA7.860e-2732.26Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S1GWJ3_HEMAN7.940e-2534.10Hypothetical protein (Fragment) n=2 Tax=Hemiselmis... [more]
A0A7S1YFE7_9STRA1.270e-2436.53Hypothetical protein (Fragment) n=1 Tax=Grammatoph... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6068contigEcto-sp13_S_contig6068:1823..7490 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score106.7
Seed ortholog evalue1.9e-20
Seed eggNOG ortholog35128.Thaps25294
Model size1112
Hectar predicted targeting categorysignal peptide
Exons8
EggNOG OGs28U2Z@1,2R0TK@2759,2XDFJ@2836
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-01_008200.1
Cds size873
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6068.16718.1prot_Ecto-sp13_S_contig6068.16718.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6068 1823..4591 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463845.2679803-CDS-Ecto-sp13_S_contig6068:1822..20981681463845.2679803-CDS-Ecto-sp13_S_contig6068:1822..2098Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6068 1823..2098 -
1681463845.278972-CDS-Ecto-sp13_S_contig6068:2541..26721681463845.278972-CDS-Ecto-sp13_S_contig6068:2541..2672Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6068 2542..2672 -
1681463845.2885604-CDS-Ecto-sp13_S_contig6068:2998..31941681463845.2885604-CDS-Ecto-sp13_S_contig6068:2998..3194Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6068 2999..3194 -
1681463845.2980318-CDS-Ecto-sp13_S_contig6068:3549..36881681463845.2980318-CDS-Ecto-sp13_S_contig6068:3549..3688Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6068 3550..3688 -
1681463845.3074784-CDS-Ecto-sp13_S_contig6068:4460..45911681463845.3074784-CDS-Ecto-sp13_S_contig6068:4460..4591Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6068 4461..4591 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463845.3166547-UTR-Ecto-sp13_S_contig6068:4591..46051681463845.3166547-UTR-Ecto-sp13_S_contig6068:4591..4605Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6068 4592..4605 -
1681463845.3259647-UTR-Ecto-sp13_S_contig6068:5636..56761681463845.3259647-UTR-Ecto-sp13_S_contig6068:5636..5676Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6068 5637..5676 -
1681463845.3372085-UTR-Ecto-sp13_S_contig6068:5788..58931681463845.3372085-UTR-Ecto-sp13_S_contig6068:5788..5893Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6068 5789..5893 -
1681463845.3498626-UTR-Ecto-sp13_S_contig6068:7410..74901681463845.3498626-UTR-Ecto-sp13_S_contig6068:7410..7490Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6068 7411..7490 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6068.16718.1

>prot_Ecto-sp13_S_contig6068.16718.1 ID=prot_Ecto-sp13_S_contig6068.16718.1|Name=mRNA_Ecto-sp13_S_contig6068.16718.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=291bp
MLWLVNVVAYLINAVVVGGSNFGWWGATNAEVSDDNPTFVTPNGWAFSIW
GVIFFFEAVFVIWGAFRSNRDSRVVQEGVGCWFAIACLVQAAWSIVFAQE
LLIVSAILLCLITLSLTMAVISLSLIQYEEGITVFTLPFWGVYFPIGLHG
GWTLAAAIVNINVALELRGDTGSELAALILSLVGAALGAAFVSLVFHNQP
YLLAVAWAIAGIASKEDYRFVQLGKDLSDGVNVALQGLWIGLLCIGVLGI
LAGVRQMNRAEAEVIDKRRPIPSAPGNPADRDLTSAIYSA*
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mRNA from alignment at Ecto-sp13_S_contig6068:1823..7490-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6068.16718.1 ID=mRNA_Ecto-sp13_S_contig6068.16718.1|Name=mRNA_Ecto-sp13_S_contig6068.16718.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5668bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6068:1823..7490- (Ectocarpus species13 EcNAP12_S_4_19m)
GGAGACTACACCACTGAACGCTGACTCACAGGTCCAGACCCGAGTCACCT GCCATCAACGTAGCGATCACCGAACATCAGGTAAGCAACAGCCTGTTTGT TGTAAAACACGCCTTTGGTGGGAAGGGTCTGGCGTGCTGTAGGGGGCAGG TGTTCTTCTTATTAGCGCCAGCAAGCCAGCAACCAGCGGGGGCGTACGGT GCGTCAAGACCCCAGCGTGTTGACAACTCCAGCTGTGCATGCCCCGTCTA ATGGTGTCAGCAGACGGGAACCCCTGCCGCCGTGATGTATGTCACACATG CGCGTGTTGTTTGGTTTGGTGCTGGGATTCTGTCGTTAGGTTGGTTCCGT TAGACGACAAGATATGTGCTGCCTCCATGTTGTTGCGTCGCTGCAAGAAT GCGATGTATATCTGCGGCTACTAGTACTGCTTTCGCGAGCATCCTTTTCT CCCCTACATGGGTGAGCAGGAGGTGTCCGCCGTGTACGAGGAAGGAACTC AAGGCTCGCGGGGCAGGCGTTTATGTTACAACGCTTCGCGTTGCCGGCGT CCGTTACCGCAACGCTGGCTGCTGTGGTCCCATGTGCACAAAGATCAATT AATTGCCATGTTGGATATCTACAAGACACACGCGAGGCGAAACAAACTGC TGTTGTTGCTGTTTGAGACATGCACCCCACCTAAACACAACCGATTCATG GTAGTGAGTACGTTATGCTGCTGCTGCTGCAGCTGGGGCCGCTGCTTCCA TGCGATTTATTTTCCGGTCGGTTACCTTGTGTGCGAGGAGTGTATGGGGA TGTTACATGATTTGCGCGCGCCTCCGTTTCCGTCCAAGGAGTCTGCGGGC TCTATCTCTTCTCTCTGCTGCTGTGTGTGCGTTCGTTCTCTCTGACTCAC GGAATTTTTTCTAGAGCCAGTTTTTGTCTTCAACCTTCAATTCGACGAGA CCCCGACGGCGCGGTGCAACACGAACGAGGTGCCTGGCACAATCAATACG TACCAGCACAGCGTAGACTAGGTAGGCTATAGAACTTCCGCGGACACCAC GTGAGCCTCCCTTCCTGTGGTTGTTGTTTTCTTCACATTTAACTCGTGTT AGTTGCTATTGTAGTGCCAAATTAGCCAAGACTCGGTCCGTGGTCACAGA AATTCTAGAGCCATCAGAAGATCTTAAGAACACCCACACTATTAGCAACG AAAGGGTACACAGTCCCGAAGAGGTATACGTACAATCCCTGCAACACGTG TGCGTGCTCAAAACTAAACTGCACGTCCACAGTTGGGTGGGTCCCGAAGA AAGACGCAGCCACGAAGGTCAACGGTTTCAACTGTTGGAAGTACCGTTCC TAGGACCATTCCCCGTTTATCCGACGGGATTTTGTTCTGGATCAGGCTGC ATTACATACATCGTTTTGGTGTTGGCTGACCGATGCGGAGTGCAGAGTTG CACTGCTGCTGCTGTGTGTTGGTGTGTGTGCGCGCGAAAAACAACTTTAG TAGTAGAATGGATTCGTCGGCTTTTATTAGGGAAAAGAAAAAAATAGAGC TGGCCCTGCATCAATTTGACACATCTGAGCCTTCGTCGGCACCGAAGCAG GAGTCCTTCCACTGCTGGCGGAAAGCTCTGTCTCCGACCGCGCGCATACG TTGGTGGAGTAAGGTGTGCAGCAGCGCCCATCCTGGCGTGGTGTTGACCG AAGTATAACCTACAAGATAGAAATGTTGCTAATAGGATGTTGATTTTAAC TGGCTCTTTACACGAAACCTTGTAGTGACAGCCCCCACTTGTTTTGTGCT GGGCGTCGGGCGAGGGTAGCGACCCGTCCCATCTTGCAAAACCTGTTTCA GGCCGTACCCAACGCTTGACTCAGCGCAGCTGAGATTCCAACGTTGCAAG GAAGTAATAACACTGCTGCTGTATGTATAGCGCACTCAAGAAATGCAGCC GTTCATTGATTGGTCTGCAGAAGCACGCCTACCAACGTTGCCCGAGAAAT TTCCCCGCGAGCACAAACAGCTATTTGCGGTCTTCCCTCTGCTTGTTTCT CGCCCAGATCTCGAGAAGCCCACGCTTTTGGCACGAAAAAAACAGCCCTC GTTCGTTACCAACCCTGCTGCCTACGGCGGAGCTGTGGTTGTGTGTCACG AAGACTTGGAACAGGCAGAAGTTGCATTAGACACGATTCCACGCGTAGGA AGACCCTAGCTGCTGCGCTTGGTGCACAACTGCTGAAGGATTATATATCG TGAAGCTTCGTACTAAAAACGAGGCTGGTAAAAATCCCAGGATCAGGGGT TCCTCGTGTCCACTGGAGGAGCTGTTCGGGACTTTAACTACTAGCCTGAT CCAAACAAACGTATCCTACTGCTGTAGACATGGCTGTGCATACAACTCTT CGCGGGCACTTGCGACACCAAGTTCAACCATCGTTGCATTCTTGAAGCAA GACATAAGAGTATGTACATGAGTTTGAAATCGTGTTGATTTTTGTTTCCT TCGCTGGCTGGAGTGTTTCAATAGTGCTTGTCGGGGTCAGGTCTCGCGTG CACTTTAGTCTGAAGCGGTAGCGATAGGTGTCGGCCTCAAAATTCTTTCA GTTTTCATCATAAATTGATTTTTGGGGTGATGGAATGACTGCAAGTTTCT CCTCTTGAGAACTCCGCGTCTGGTTGCTGCAGTTCTGCCCTCTGACGGGT AAACTTATCCTTGCTCTCGTGGTGGAGGGAGGGCCTGGTCAAGACACTTA GCGCACGACACCGCCACCCTGTGCACGAACACCCTTCACCGCACAAATCC TTGGAACGATAAATAGCCAACGAACGATCTCCGAGAGCCCATGGTTTTAA TTTTCGGGTCACATCGTACATCTTTTTCTTCACAGGTTCAGGTTCAAGGA TGTTGTGGCTCGTCAACGTTGTGGCCTACCTCATCAACGCTGTGGTCGTT GGTGGGAGCAACTTTGGCTGGTGGGGGGCTACGAATGCCGAAGTTTCTGA CGACAACCCGACTTTCGTCACGCCAAACGGGTGAGCGCTACTCTGCAGCA TTCACACAGCACTTGCTGTACCCCACGCTCCTGAGTAGCATTTCCCGAGG TAACTAGCATCTGGATAGATTCGGTGCACCGTCATGGTTCTGATCTGCGG GAAATGGATGTCGCATAGGGCACACATCTATTTGCGGTATTCATCCATCC ACAGCAAGAGAGAGAGAGACAGAGAGGCAGAGAGCGAGAGAGAGAGAGGG AGAGAGAGATGCAAGACGACCAGCAGTGCACGAGACATGCAAGCTATAGT TCTTGGGCGCCGCCCACTCACGGGAAAGGAAAATAAAGGAAAGGAAAGAC ATGGCGTCCTTTCGTTGTGTATGTCTTGGGGAGAAGAGGTTGAGGGAATG GCTAGCCGGTAGCACCCGTAACTAGAACAAGTCCCAGCGAGCTTTCTCAA GGGGGTTGCGTGTCTCGTCCACCCGCTGTCTCGTGCTGATCAAAGGTGCG TGACGACAAGTCGTAGTTGATGGTCGGCGTGCGCGCGTTCACAAGCCACT GCGCTACGCTGCTTCGAAGTACTACATATTGTAGTGCTAGCTTCTTTCAC CAAGCGTCGTGGTCGTCACTAGAGAAGACTTCACGGGTGTCATCCTATAC ATAGCTCGTGCGTGTACACATGATCTTGATTGATGCAGGAGCCAATTTTT TTTACCTTTTTTATTTTGCGAGATCCAAGTTATTGAAGCACACTCTTCTT CTAGGTCTTGCAACTCATCTCTTTGTTGCGATTGTTCACGTGCGTATTAC AGGTGGGCGTTCTCCATCTGGGGCGTCATCTTCTTTTTCGAGGCAGTTTT CGTAATCTGGGGAGCATTCCGGAGCAACCGGGACTCTCGCGTCGTGCAAG AAGGCGTCGGCTGCTGGTTCGCGATCGCTTGCCTCGTCCAGGTGACCGTT AGACTAGGAGCTGCTAGCGAGAGCTTCTGAGCCACCGCTTCTTGTGCGCG TGTTATCCATATCTTCTAGCCACTTGATTCCCCGAATGTTCTCTCCACAC TTTGGCGTTGTGGTGCCTCTTTCTCTCACTCATGTCCTCCTCGACCCGAT TTCGGCCCGTTTTTTTCTTGTCTTAGTCTCTTGTCTTGATCTATTCTCCT TTTGCCTTCTACCCCCCACCACCCCTCCCTTCTTCTACCTCTCAGCTCCC ATCCCGTCCCCCCCAACATTAAATTTTTATCCCCCCACCCCTCCCTGCAT ACGTGCCTACTTTCCGCCTGCATCACCAAAAATGGGACAAAAAAAGGCGG CCTGGAGCATCGTGTTCGCGCAGGAGCTGCTCATCGTGAGCGCCATCCTC CTGTGCCTTATCACGCTGTCGCTCACCATGGCGGTGATTTCCCTCAGCCT GATCCAGTACGAGGAGGGGATCACGGTGTTCACCCTACCCTTCTGGGGCG TGTATTTCCCGATAGGGTTACACGGAGGCTGGACTCTGGCGGGTGAGCGA GCGAGCGAGCGAGCAAGCACGACGACGTTTGACGTCGTGAAATGACTCAT CGTTCGAGCAACTGTTCAACCCGCGTGGTGACACACTCGGAGGAGAGCGT CATGAGCAAGAAGATGAAGTATGCGTACTTCCACAGGAAAAAGTACTCTC TTTCCTCTCACACCGCAACGTTGTTTTGTTCGGCGACCTTGGACGCTAAA ACCTCTAGTGTGCTTCCCCACTGCGCGCCGCCCTCCAACCACGTTGCGCT TTGCCGAAAAAAAACACGTGCGTGCGCTTGGTATGATCACGCGACGCGGC GTGTTGAAACGACAACAGCCGCCATCGTCAACATCAACGTGGCGCTCGAG CTGAGGGGTGACACTGGCTCTGAGCTTGCCGCCCTCATCCTCAGTCTCGT TGGGGCGGCCTTGGGAGCGGCCTTCGTGTCGCTGGTGTTCCACAACCAGG TTGGTGCTCTATTGTCCCAGTTGCGGTGCCCCCTTCGGTTTGCGGTGCCC TCCCGTGGCGCAGCAAGGGATATCACCTCATCCCGTGCCCCGTAGGAGAC TGGTTTCCCCGTGCGTGCGTGCGTGTTTGTGTTGTTTATCCGATTGTTGA AGAAGCCGCCGCAGAATTGCATTATTTTTGCTACATATCGTTGTTGTTGT CTTGGGCTTGGAGATGAAGATGTTGACCGCCACCCATTCACCTCCGGTTC TTGCGACGAGTCAAGCTGGCGCGGATTGGATATTCGTGATCATGAGCTAT ATGCCAACCCAAGTAAGATCAATTTGTGCAAAGGGATTTAATTAAAGATA ATTGAACCAATAAAACGCAGCAGTAAAAAATAACGTCCACCCCATCCACG GATGTACCCGTCCCCCTGGGCATTTTTTGTTTTTACGATCAGCCTTACCT CCTGGCTGTTGCTTGGGCCATCGCCGGGATCGCGTCCAAGGAAGACTACC GGTTCGTCCAGCTCGGGAAAGACTTGTCCGACGGCGTCAATGTGGCGCTG CAAGGGTTGTGGATCGGGCTGCTGTGCATCGGCGTCTTGGGAATCCTCGC CGGGGTGAGGCAGATGAACCGGGCTGAGGCGGAGGTGATTGACAAGAGGC GCCCGATACCCTCCGCCCCGGGCAATCCGGCAGACCGCGACCTTACCTCG GCAATCTACTCGGCTTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6068:1823..7490-

>mRNA_Ecto-sp13_S_contig6068.16718.1 ID=mRNA_Ecto-sp13_S_contig6068.16718.1|Name=mRNA_Ecto-sp13_S_contig6068.16718.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=873bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6068:1823..7490- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTGTGGCTCGTCAACGTTGTGGCCTACCTCATCAACGCTGTGGTCGT
TGGTGGGAGCAACTTTGGCTGGTGGGGGGCTACGAATGCCGAAGTTTCTG
ACGACAACCCGACTTTCGTCACGCCAAACGGGTGGGCGTTCTCCATCTGG
GGCGTCATCTTCTTTTTCGAGGCAGTTTTCGTAATCTGGGGAGCATTCCG
GAGCAACCGGGACTCTCGCGTCGTGCAAGAAGGCGTCGGCTGCTGGTTCG
CGATCGCTTGCCTCGTCCAGGCGGCCTGGAGCATCGTGTTCGCGCAGGAG
CTGCTCATCGTGAGCGCCATCCTCCTGTGCCTTATCACGCTGTCGCTCAC
CATGGCGGTGATTTCCCTCAGCCTGATCCAGTACGAGGAGGGGATCACGG
TGTTCACCCTACCCTTCTGGGGCGTGTATTTCCCGATAGGGTTACACGGA
GGCTGGACTCTGGCGGCCGCCATCGTCAACATCAACGTGGCGCTCGAGCT
GAGGGGTGACACTGGCTCTGAGCTTGCCGCCCTCATCCTCAGTCTCGTTG
GGGCGGCCTTGGGAGCGGCCTTCGTGTCGCTGGTGTTCCACAACCAGCCT
TACCTCCTGGCTGTTGCTTGGGCCATCGCCGGGATCGCGTCCAAGGAAGA
CTACCGGTTCGTCCAGCTCGGGAAAGACTTGTCCGACGGCGTCAATGTGG
CGCTGCAAGGGTTGTGGATCGGGCTGCTGTGCATCGGCGTCTTGGGAATC
CTCGCCGGGGTGAGGCAGATGAACCGGGCTGAGGCGGAGGTGATTGACAA
GAGGCGCCCGATACCCTCCGCCCCGGGCAATCCGGCAGACCGCGACCTTA
CCTCGGCAATCTACTCGGCTTGA
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