mRNA_Ecto-sp13_S_contig6068.16718.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig6068.16718.1 vs. uniprot
Match: A0A6H5LEQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LEQ8_9PHAE) HSP 1 Score: 564 bits (1453), Expect = 2.460e-201 Identity = 284/294 (96.60%), Postives = 291/294 (98.98%), Query Frame = 3
Query: 228 SGSRMLWLVNVVAYLINAVVVGGSNFGWWGATNAEVSDDNPTFVTPNGWAFSIWGVIFFFEAVFVIWGAFRSNRDSRVVQEGVGCWFAIACLVQAAWSIVFAQELLIVSAILLCLITLSLTMAVISLSLIQYEEGITVFTLPFWGVYFPIGLHGGWTLAAAIVNINVALELRGDTGSELAALILSLVGAALGAAFVSLVFHNQPYLLAVAWAIAGIASKEDYRFVQLGKDLSDGVNVALQGLWIGLLCIGVLGILAGVRQMNRAEAEVIDKRRPIPSAPGNPADRDLTSAIYSA 1109
SGSRMLWLVNV+AYLINAVVVGGSNFGWWGATNAEVSDDNPTFVTPNGWAFSIWGVIFFFEAVFVIWGAFRSNRDSRVVQEGVGCWFAIACL+QAAWSIVFAQELLIVSAILLCLITLSLT+AVISLSLIQ EEGIT+FTLPFWGVYFPIGLHGGWTLAAAIVNINVALELRGDTGSELAALILSLVGAALGAAF+SLVFHNQPYLLAVAWAIAGIASK+DYRFVQLGKDLSDGVNVALQGLWIGLLCIGVLGIL GVRQMNRAEAEVI KRRPIPSAPGNPADRDLTSAIYS+
Sbjct: 7 SGSRMLWLVNVLAYLINAVVVGGSNFGWWGATNAEVSDDNPTFVTPNGWAFSIWGVIFFFEAVFVIWGAFRSNRDSRVVQEGVGCWFAIACLIQAAWSIVFAQELLIVSAILLCLITLSLTLAVISLSLIQCEEGITLFTLPFWGVYFPIGLHGGWTLAAAIVNINVALELRGDTGSELAALILSLVGAALGAAFISLVFHNQPYLLAVAWAIAGIASKQDYRFVQLGKDLSDGVNVALQGLWIGLLCIGVLGILVGVRQMNRAEAEVIHKRRPIPSAPGNPADRDLTSAIYSS 300
BLAST of mRNA_Ecto-sp13_S_contig6068.16718.1 vs. uniprot
Match: A0A835ZJ92_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJ92_9STRA) HSP 1 Score: 182 bits (461), Expect = 2.330e-51 Identity = 103/248 (41.53%), Postives = 148/248 (59.68%), Query Frame = 3
Query: 255 NVVAYLINAVVVGGSNFGWWGATNAEVSDDNPTFVTPNGWAFSIWGVIFFFEAVFVIWGAFRSNRDSRVVQEGVGCWFAIACLVQAAWSIVFAQELLIVSAILLCLITLSLTMAVISLSLIQYEEGITVFTLPFWGVYFPIGLHGGWTLAAAIVNINVALELRGDTGSELAALILSLVGAALGAAFVSLVFHNQPYLLAVAWAIAGIASKED-YRFVQLGKDLSDGVNVALQGLWIGLLCIGVLGILA 995
NVVA+ +N VVG SNFG WG TN +VSD PT TP +AFSIWG+IF E V+W A N + V++G+G WFA AC++QA WSI FAQE L +SA++L I + L A +L+ + G F ++ PIGLH GWT AAA+VNIN+A +++ A I+++ A +V + +L AV WA+A I + + YR LGK+++ G+ A+ +W+GLL + V+ + A
Sbjct: 37 NVVAFALNFAVVGASNFGLWGKTNKDVSDSIPTLTTPAAYAFSIWGLIFTSETALVVWQALPRNAGNLAVKQGLGPWFAAACVLQAVWSIAFAQEALTLSAVILVGIAVCLGKASANLAGFR-ARGAAWFDHLI--LHAPIGLHAGWTCAAALVNINLAAAQTSGVAAQVTAAIVTVFAXXXXXAVYGVVLLDPAFLAAVVWALAAIVANDGGYRDALLGKEVARGLTGAITVIWVGLLALQVVAVAA 281
BLAST of mRNA_Ecto-sp13_S_contig6068.16718.1 vs. uniprot
Match: A0A7S3UTX0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UTX0_HETAK) HSP 1 Score: 141 bits (356), Expect = 6.990e-36 Identity = 81/230 (35.22%), Postives = 133/230 (57.83%), Query Frame = 3
Query: 255 NVVAYLINAVVVGGSNFGWWGATNAEVSDDNPTFVTPNGWAFSIWGVIFFFEAVFVIWGAFRSNRDSRVVQEGVGCWFAIACLVQAAWSIVFAQELLIVSAILLCLITLSLTMAVISLSLIQYEEGITVFTLPFWGVYFPIGLHGGWTLAAAIVNINVALELRG-DTGSELAALILSLVGAALGAAFVSLVFHNQPYLLAVAWAIAGIASKEDYRFVQLGKDLSDGVNVA 941
NV+A+++N + G+N +G + E+SD+ T +TP GWAFSIWGVIF E VF W F+S+ D+ ++ E VG ++ ACL Q+AW++ A +L +VSA++L I +SL A+I L + E ++ V F GLHGGWT A +++ N+A G +L I+SL + + + N Y LA+ WA+ GI+S++ + LG ++++ + ++
Sbjct: 21 NVLAFILNCSLTFGNNGFGYGKSIEEISDEYQTIITPPGWAFSIWGVIFALEFVFTAWQLFQSS-DNLILNEVVGFFWVSACLFQSAWNLTIAAQLFVVSALVLAGIAISL--AIICLRITPKEMNQHETVAEYFLVRFSFGLHGGWTCVATLLSFNLAAVANGVSPKGQLVVAIISLAVVVAASLYFGMFKDNLSYSLAICWALFGISSEQGQTSMILGPEIANHIRIS 247
BLAST of mRNA_Ecto-sp13_S_contig6068.16718.1 vs. uniprot
Match: A0A7S2V2F8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V2F8_9STRA) HSP 1 Score: 137 bits (344), Expect = 4.180e-34 Identity = 93/248 (37.50%), Postives = 133/248 (53.63%), Query Frame = 3
Query: 240 MLWLVNVVAYLINAVVVGGSNFGWWGATNAEVSDDNPTFVTPNGWAFS-IWGVIFFFEAVFVIWGAFRSNRDSRVVQEGVGCWFAIACLVQAAWSIVFAQELLIVSAILLCLITLSLTMAVISLSLIQYEEGITVFTLPFWG----VYFPIGLHGGWTLAAAIVNINVALELRGDTG-SELAALILSLVGAALGAAFVSLVFHNQPYLLAVAWAIAGIASKEDYRFVQLGKDLSDGVNVALQGLWIGL 965
+L VNVVA+ N V+ + G G +N EVS+ T +TP GWAF IW +IF EA FVIW + R + + G+G WFA AC++Q W I FA E ++ SA+LL I SL A L+ ++ + WG V+ P+GLHGGWTLAA +VN+++A+ + G + ++L +SL AA+G S H Y LAVAW + I + +LG+D + + L I L
Sbjct: 19 LLVFVNVVAFCFNVVITFLPS-GVIGKSNEEVSNQYETIITPAGWAFGPIWAIIFILEAAFVIWQCLPTARGNPWIL-GIGFWFAAACILQGCWGIAFAAEKIVASAVLLLGIAASLAFACSELTKLRKSAEAPELS---WGRYVVVWLPLGLHGGWTLAAGLVNVSLAVYVEGASAQAQLVVAAVSLGIAAVGGLVASRQMHAA-YSLAVAWGLLAIGLNQATTRERLGEDTAQALEYTSVALAIVL 260
BLAST of mRNA_Ecto-sp13_S_contig6068.16718.1 vs. uniprot
Match: A0A7S2LGL1_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LGL1_9STRA) HSP 1 Score: 134 bits (337), Expect = 6.690e-33 Identity = 92/260 (35.38%), Postives = 140/260 (53.85%), Query Frame = 3
Query: 249 LVNVVAYLINAVVVGGSNFGWWGA--TNAEVSDDNPTFVTPNGWAFSIWGVIFFFEAVFVIWGAFRSNRDSRVVQEGVGCWFAIACLVQAAWSIVFAQELLIVSAILLCLITLSLTMAVISLSLIQYEEGITVFTLPFWG---VYFPIGLHGGWTLAAAIVNINVALELRG-DTGSELAALILSLVGAALGAAFVSLVFHNQPYLLAV--AWAIAGIASKEDYRFVQLGKDLSDGVNVALQG--LW-----IGLLCIGVL 983
++N VAY++N +V G G N+E+SD PT +TP GWAFSIW +IF +AVF++ F+ R +VQ+GVG W+ C+ QA WSI F E++ +S +L+ I +SL ++S QY+ + FW + FP +H GW +AA +NI+V L D S+L+A ILS+ A + L + Y++AV AWA AGI+S+ ++ + V AL+ W + +LCI V+
Sbjct: 46 ILNAVAYVVNLIVTYGIGVLGIGGLPNNSELSDKYPTLITPAGWAFSIWAIIFISQAVFIVAQCFKKYRAHPLVQDGVGYWYVGTCISQAGWSIAFGYEVIWLSLVLMIAILISLVGLLVS----QYK----LKPGNFWDYVILCFPFAIHCGWIIAATFLNISVLLVSEDVDATSQLSAAILSVAALLSLAVYTLLALSSPEYVVAVVLAWANAGISSELSDPPTEIREHFDSVVTDALENSVTWAYAIILAILCITVI 297
BLAST of mRNA_Ecto-sp13_S_contig6068.16718.1 vs. uniprot
Match: A0A0G4FPA6_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4FPA6_9ALVE) HSP 1 Score: 120 bits (302), Expect = 7.670e-28 Identity = 97/288 (33.68%), Postives = 147/288 (51.04%), Query Frame = 3
Query: 255 NVVAYLINAVVVGGSNFGWWGATNAEVSDDNPTFVTPNGWAFSIWGVIFFFEAVFVIWGAFRSNRDSRVVQEGVGCWFAIACLVQAAWSIVFAQELLIVSAILLCLITLSLTMAVISL------SLIQYEEGITVFTLPFWGVYFPIGLHGGWTLAAAIVNINVAL--ELRGDTGSE--LAALILSLVGAALGAAFVSLVFHN---QPYLLAVA-WAIAGIASK---------EDYRFVQLGKDLSDGVNVALQGLWIGLLCIGVLGILAGVRQMNRAEAEVIDKRRP 1049
N+VA+++NAV+V SN G +G TNAE S T +TP G+AFSIWG+I+ E ++ I+ F S+++ EGV W + Q W+I FA++ +I SA+LL +I +SL V+SL + + E + L +W P G+H GW AAAI+N N+ + G G++ L+ ILSL GA+ + + + +P + AVA WA A I+S+ E + F G + + L GL L + V GI V R E + +P
Sbjct: 9 NLVAFILNAVLVNLSNTGIYGPTNAEQSAKYSTVITPAGYAFSIWGLIYITEGIWAIYQMFPPVSRSKLLSEGVSFWQISMSVFQVLWTIAFARDWIIASAVLLLMIWVSLVGLVVSLFRFRTGEVDKSGEKREISLLNYWIFCVPFGIHLGWVTAAAILNWNIVTVAQAGGPDGAQQQLSVAILSLA-LVFGASLIFTLGNRAVTEPAVPAVAIWAAAAISSQLQNPPQMVVEVFGFS--GPLIFHSLQSVLLGLQYLLAAVFVFGIAKNVLGWTRGRMEAQQRAQP 293
BLAST of mRNA_Ecto-sp13_S_contig6068.16718.1 vs. uniprot
Match: A0A812RS49_9DINO (Hypothetical protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812RS49_9DINO) HSP 1 Score: 120 bits (301), Expect = 7.680e-28 Identity = 85/263 (32.32%), Postives = 136/263 (51.71%), Query Frame = 3
Query: 228 SGSRMLWLVNVVAYLINAVVVGGSNFGWWGATNAEVSDDNPTFVTPNGWAFSIWGVIFFFEAVFVIWGAFRSNRDSRVVQEGVGCWFAIACLVQAAWSIVFAQELLIVSAILLCLITLSLTMAVISLSLIQYEEGITVFTLPFWGVYFPIGLHGGWTLAAAIVNINVALEL-RGDTGSELAALILSLVG-AALGAAFVSLVFHNQPYLLAVA-WAIAG----IASKEDYRFVQLGKDLSDGVNVALQGLWIGLLCIGVLGILA 995
SGS M+ +VN+ AYL+N + GS G +G TN +S T +TP+G+AFSIWG+IF +E +F + F S R S+VV + W+ ACL Q AW++ FAQE++I + + I +SL + ++ + ++ T +W + P +H GW +AA +NI V + RG LA ++ G +A+ F P + VA WA+ G +AS E R + + D + G+ I + +L ++A
Sbjct: 6 SGSCMINIVNLAAYLVNLGITYGSLTGAFGPTNTNLSAKYHTLITPSGFAFSIWGIIFIWEGIFTVAQLFPSYRSSKVVTT-ITPWWLAACLFQCAWTLFFAQEVMIGAMACMLGILISLMVGILRMDFLEEMS-----TWEYWLLRAPFSVHTGWIVAATSLNICVVADFYRGPPEVMLALAMVCFAGISAIVTVFTFASPKADPIVALVACWALLGMVAELASAEKLRDASVRWNFFDWPQYVISGVRIAAFLLSLLCMVA 262
BLAST of mRNA_Ecto-sp13_S_contig6068.16718.1 vs. uniprot
Match: A0A7S2U694_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U694_9STRA) HSP 1 Score: 118 bits (296), Expect = 7.860e-27 Identity = 90/279 (32.26%), Postives = 143/279 (51.25%), Query Frame = 3
Query: 252 VNVVAYLINAVVVGG-SNFGWWG-ATNAEVSDDNPTFVTPNGWAFSIWGVIFFFEAVFVIWGAFRSNRDSRVVQEGVGCWFAIACLVQAAWSIVFAQELLIVSAILLCLITLSLTMAVISLSLIQYEE----GITVFTLPFWGVYFPIGLHGGWTLAAAIVNINVALELRGDTGS-ELAALILSLVGAALGAAFVSLVFH-----NQPYLLAVAWAIAGIASK----EDYRFVQLGKDLSDGVNVALQGL-WIGLLCIGVLGILAGV---RQMNRAEAE 1028
+NV AY +N + G N GW+G TN+E+S+ T +TP G AFSIWG+IF F+A+F + R +R+VQ GV W+ C+ Q W+ FA E++ +S + I +SL + S ++ + + + FW FP +HGGW AA +N+NVA+ G +G +LA I+SL A L A V ++F+ N ++WA I S+ +D + +GV +A + + +I + + I+AGV R +N +E
Sbjct: 42 LNVFAYGVNVLFTFGIGNAGWFGNGTNSELSEKYQTIITPRGTAFSIWGLIFMFQAIFCVVQLLPRYRGTRMVQNGVSYWWTAVCVTQVGWTFAFAYEVIPLSLFFMLCIWVSLMGLLYSQYYLEVSDIQNGSLLSWLAEFWLFQFPFCIHGGWITAALALNMNVAVVNSGASGDVQLAVGIISL--AVLHAVSVWVLFNLGRKPNYTIACVLSWANGWIYSELQNPKDLIVATFTQQTINGVALAARAVAYIIFFQVVIRVIIAGVQKYRDINNTPSE 318
BLAST of mRNA_Ecto-sp13_S_contig6068.16718.1 vs. uniprot
Match: A0A7S1GWJ3_HEMAN (Hypothetical protein (Fragment) n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1GWJ3_HEMAN) HSP 1 Score: 112 bits (279), Expect = 7.940e-25 Identity = 74/217 (34.10%), Postives = 123/217 (56.68%), Query Frame = 3
Query: 255 NVVAYLINAVVVGGSNFGWWGATNAEVSDDNPTFVTPNGWAFSIWGVIFFFEAVFVIWGAFRSN--RDSRVVQEGVGCWFAIACLVQAAWSIVFAQELLIVSAILLCLITLSLTMAVISLSLIQYEEGITVFTLP--FWGVY-FPIGLHGGWTLAAAIVNINVALELR-GDTGSELAALILSLVGAALGAAFVSLVFHNQP-YLLAVAWAIAGIASK 884
+ AY +N +V S FGW+GATN+E+S T+VTP GWAFSIW IF + +F ++ S S VV+ W + A + Q W+ +FAQ+L+++S LL ++ + L++AV+ L+Q E G VF+ W ++ P +H GW A+++N+NV + S+LAA +++L G +++ +LV + + VAWA+ + S+
Sbjct: 24 SAAAYAVNCFIVQTSMFGWYGATNSELSRKYQTYVTPAGWAFSIWSYIFLSQLIFTVYTLLSSAPAHCSAVVKAIWLPWIS-AQICQVLWTFIFAQDLILLS--LLAMVGIYLSLAVVVYKLLQIERGTKVFSHSPGTWALFHLPFLVHFGWISCASLINVNVVMRAHLFSMESQLAAAVVTL-GCVAISSYSALVLRGEAAHAFVVAWALYALNSQ 236
BLAST of mRNA_Ecto-sp13_S_contig6068.16718.1 vs. uniprot
Match: A0A7S1YFE7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1YFE7_9STRA) HSP 1 Score: 111 bits (277), Expect = 1.270e-24 Identity = 80/219 (36.53%), Postives = 116/219 (52.97%), Query Frame = 3
Query: 252 VNVVAYLINAVVVGG-SNFGWWGAT-NAEVSDDNPTFVTPNGWAFSIWGVIFFFEAVFVIWGAFRSNRDSRVVQEGVGCWFAIACLVQAAWSIVFAQELLIVSAILLCLITLSLTMAVISLSLIQYEEGITVFTLP-FWGVYFPIGLHGGWTLAAAIVNINV-ALELRGDTGSELAALILSLVGAALGAAFVSLVFH----NQPYLLAVAWAIAGIASK 884
+NV+ Y++N V+ G GW G N E+S+ T VTP G AFSIWG+IF F+A+FV+ R +VQ+GVG W+ C QAAW+ FA E++ + A++ + +A++ EG TL FW + FP +H GW AA+ +N+NV A+ +LA I+SL A L A V +VF N L ++WA I S+
Sbjct: 24 LNVIFYILNTVITFGIGTLGWTGTPDNGELSEKYQTLVTPKGTAFSIWGIIFIFQAIFVVVQLLPRFRAKAMVQDGVGYWYIATCAFQAAWTFAFAYEIIWL-ALIFIIXXXXXXVAIVYYQYYLPSEG----TLSEFWLLRFPFMIHCGWLTAASTLNVNVQAVASNAAPEIQLAMGIISL--AYLHAVSVWVVFGLTRPNYTIALVISWASGWIYSE 235 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6068.16718.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig6068.16718.1 >prot_Ecto-sp13_S_contig6068.16718.1 ID=prot_Ecto-sp13_S_contig6068.16718.1|Name=mRNA_Ecto-sp13_S_contig6068.16718.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=291bp MLWLVNVVAYLINAVVVGGSNFGWWGATNAEVSDDNPTFVTPNGWAFSIWback to top mRNA from alignment at Ecto-sp13_S_contig6068:1823..7490- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig6068.16718.1 ID=mRNA_Ecto-sp13_S_contig6068.16718.1|Name=mRNA_Ecto-sp13_S_contig6068.16718.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5668bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6068:1823..7490- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6068:1823..7490- >mRNA_Ecto-sp13_S_contig6068.16718.1 ID=mRNA_Ecto-sp13_S_contig6068.16718.1|Name=mRNA_Ecto-sp13_S_contig6068.16718.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=873bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6068:1823..7490- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |