mRNA_Ecto-sp13_S_contig6059.16703.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6059.16703.1
Unique NamemRNA_Ecto-sp13_S_contig6059.16703.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6059.16703.1 vs. uniprot
Match: D7FVU7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVU7_ECTSI)

HSP 1 Score: 155 bits (391), Expect = 5.320e-45
Identity = 80/88 (90.91%), Postives = 83/88 (94.32%), Query Frame = 1 
Query:  316 ENRDKFVVVGLKGASVRKELRLDSPILRTLRRGTVVSVSEVRQRRAHIVKPVDGWASLSTEDGYGIIEPTKRCSRYKVREYNTSLGLR 579
            ENRDKFVVVGLKGASVRKELRLDSPILRTLRRGTVVSVSEVRQRRAHIVKPV+GWASLSTEDGYGIIEPTKRCSRYKV  YN  + +R
Sbjct:    3 ENRDKFVVVGLKGASVRKELRLDSPILRTLRRGTVVSVSEVRQRRAHIVKPVNGWASLSTEDGYGIIEPTKRCSRYKV-VYNDGIIVR 89
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BLAST of mRNA_Ecto-sp13_S_contig6059.16703.1 vs. uniprot
Match: D7FVU8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVU8_ECTSI)

HSP 1 Score: 116 bits (290), Expect = 4.030e-29
Identity = 63/133 (47.37%), Postives = 82/133 (61.65%), Query Frame = 1 
Query:  184 MSFKLLSLCGCVD-----------DGAASKEREQQIEYNCFCFPVGEEESVFIPDENRDKFVVVGLKGASVRKELRLDSPILRTLRRGTVVSVSEVRQRRAHIVKPVDGWASLSTEDGYGIIEPTKRCSRYKV 549
            M  +   LC CV+           D     + E    +  +C      E VF+PD +R+K+ VVGL GA+VR   RLDSP+LRTL +GTVV V++VR RRAHI+KP+DGWASLSTE GY I+E   R ++YKV
Sbjct:    1 MGARCCGLCFCVEGDDKEDALVDNDSNNPYQHEHSKRHAKWCVDDSATERVFVPDASRNKYQVVGLGGATVRMTARLDSPVLRTLPQGTVVVVAQVRSRRAHIIKPMDGWASLSTESGYVILEAIARPTKYKV 133
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BLAST of mRNA_Ecto-sp13_S_contig6059.16703.1 vs. uniprot
Match: D7G246_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G246_ECTSI)

HSP 1 Score: 108 bits (269), Expect = 5.760e-24
Identity = 54/86 (62.79%), Postives = 68/86 (79.07%), Query Frame = 1 
Query:  295 ESVFIPDENRDKFVVVGLKGASVRKELRLDSPILRTLRRGTVVSVSEVRQRRAHIVKPVDGWASLSTEDGYGIIEPT-KRCSRYKV 549
            E VFIP  +R+K+VVVGL GA+VR   RLDSP+LRTL +GTVV V+++R RRAHIVKP+DGWASLST   Y I+EP   + ++YKV
Sbjct:  394 ERVFIPKASRNKYVVVGLVGATVRVSKRLDSPVLRTLPKGTVVEVAQIRSRRAHIVKPIDGWASLSTVSSYRILEPPITQSTKYKV 479
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6059.16703.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FVU7_ECTSI5.320e-4590.91Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FVU8_ECTSI4.030e-2947.37Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7G246_ECTSI5.760e-2462.79Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6059contigEcto-sp13_S_contig6059:3303..8472 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size580
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-01_002210.1
Cds size579
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463844.0447907-CDS-Ecto-sp13_S_contig6059:3302..36181681463844.0447907-CDS-Ecto-sp13_S_contig6059:3302..3618Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6059 3303..3618 +
1681463844.054235-CDS-Ecto-sp13_S_contig6059:7597..76981681463844.054235-CDS-Ecto-sp13_S_contig6059:7597..7698Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6059 7598..7698 +
1681463844.0629945-CDS-Ecto-sp13_S_contig6059:8310..84721681463844.0629945-CDS-Ecto-sp13_S_contig6059:8310..8472Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6059 8311..8472 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6059.16703.1prot_Ecto-sp13_S_contig6059.16703.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6059 3303..8472 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6059.16703.1

>prot_Ecto-sp13_S_contig6059.16703.1 ID=prot_Ecto-sp13_S_contig6059.16703.1|Name=mRNA_Ecto-sp13_S_contig6059.16703.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=193bp
RSRNDVVYERWLVPTATTKLGMPGTRKPINNMYPGTRPTQPSTGSDLAAV
HIGLTAPGLCEMSFKLLSLCGCVDDGAASKEREQQIEYNCFCFPVGEEES
VFIPDENRDKFVVVGLKGASVRKELRLDSPILRTLRRGTVVSVSEVRQRR
AHIVKPVDGWASLSTEDGYGIIEPTKRCSRYKVREYNTSLGLR
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mRNA from alignment at Ecto-sp13_S_contig6059:3303..8472+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6059.16703.1 ID=mRNA_Ecto-sp13_S_contig6059.16703.1|Name=mRNA_Ecto-sp13_S_contig6059.16703.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5170bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6059:3303..8472+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGAAGTCGGAATGATGTCGTGTATGAGCGTTGGCTGGTACCGACTGCAAC
AACCAAACTCGGAATGCCCGGAACTCGGAAGCCAATCAACAACATGTACC
CAGGTACCAGACCAACCCAGCCATCCACAGGATCCGACTTAGCTGCTGTT
CACATCGGCTTGACCGCTCCCGGCCTGTGTGAGATGTCCTTTAAACTGCT
ATCTTTATGCGGGTGTGTTGACGATGGTGCCGCTTCGAAGGAAAGGGAAC
AACAGATCGAGTACAACTGCTTCTGCTTCCCGGTAGGGGAAGAGGAGTCC
GTTTTCATCCCAGACGGTGAGCAAGAAGATGACGAGGAGAGGCAGAGAGC
CCCAGACTTACTATGATGCACCTGGCGCAATGTAAAGCAGCCCGTTCCTG
ATGGCATTTTTCAGCACGAACGAGGGTGGGTGGTTTTGTCATTCCACTGT
CGCTCTGCTTCTGTTTCATGGTTCACCTCTCAGGTGGATCACCTCCCTCC
CCTCGTCGTGCTCTCTGTATGGGTCTTGGATGGGCAAGAAGTCTCTGTTT
TACAACAACGCACGTCTCCTTGGTTATCAGCTCAGCAACATCCGGCTCTT
TCTTTTCGGACTGTCTGGCTACCTACCTGCAGCTGATTGGCGGTCCCGAC
CTCGAATCGTTTCTACTGTCGTAAATCCAGGTCCTTCGCTCACAGTACTG
TCGCCGTACGCGGGACGAGGGGATCGGTCCATCGTTGCGTGTCATCGACG
CAATGAGTATATACCATAACAGTCAATAACTCAATACCCCGAAGATGTTT
AAATGACAACCCGAGCTTTGACCTGCGACAGCGACACACCCGTCCTGCAC
TACCCCCCCCGTGGTCTTGAGTGTGCAAACCCCAAAACAACTCGACCACT
CTCAATCAGCAGGGGAGTGTGCATCGCCCCTTACCTCTCCCCCCACAAGC
TGCTAGAAGGAGCAGCGGAAATCTAAAGCAAAATTCCATATCTTTTTATC
CTGCTGCGCGTCGTGTTAGTGTTCGTGTATAGTTAAGGACAACACTGACG
CGTACTCCTGACTGCCACTTTTATCTAGAGTCCTCGTCACCGAAGCGAAG
CGAGCCGGGCGTCGCCACATTTCTGCATGCCACAGACACACAGAGGCAGG
GTCATGCAGGGTCTGCACAACAAGCGGACGGAGGGATACAACACGTAGTG
ACAAGCAAAACACTGAGATTAGAGCGCTGCTGTACCGGGGAATATGCTTT
TTGCTAAGGGAGTGTTATCCGTTTTTTCCTAGTCTCTGCATGCAGTCTTC
TAGGAGCTTGTATCGGAACAAGCCCGAACTTTGGTGCGGGTCGGAGTCCC
TGCCTGGCGTTAACACTCGCAAGCTTTTATTGGAGACGGCGCGGAGGTCC
ACAACAAGTTACTCAGAATCAAGAGTACTCGCACAATTTTCTTCGCGTTA
TGGGTAGGTTCCAACATTTTATCGATGTGCAATCTAAGGTGTGGGGCTGG
TGCCGTGATCGGTGATTCGAATTAAAATCCCGAACGGTGCAAATACCCGG
GCACCTTTCCCCGCACCGTTCCGCACCGTGCGGCAAACCGAGCGGCTTGT
TCCTCAATGTGTAGCCAAACACAGGAGAGGGATGCCGATCACCTTCCCAG
CTGGCGCTTGCTTCTAGTGTACCCTGTGTACGCGTTGAGCACGCAAATTG
TGGCACTAAACATAAAGGTACCCGAACTTGGCATCAAGTGTATTTTATGC
TCGAAACATTTGATTCAAACTTTAGCACCTGATTCTGAGCCCGGTTCAAA
ACCTCAACACTAAAACCTACATTGTGGCCATTTGTACCTCGCCAGAGGAA
TTAAGAACCCCAACCTCGGCCAAAAGTAGAGAGTTCTTATGCGGGTGCTT
GCTGCCCATCAGTGCCTCATGTGAAGACGTATGAATGATATACGCGCGGC
TGTTGTACGTGAGCGCATCACGTCGGGGGAAGAGAGGTATTGCGACAGGA
GCCCGCCGGAGAGATATCCTGAGCAACACCCCACAGTTCCAAGTGCACTT
CCAATTGCTTCCTTCGTCTGCGGAAATATTGCAAACACGCATGAATGTGT
CGTTGCTGTGTCATCCTTCCCGCCGTGATTCGTGTGTGTGTGGGCCTTCT
TGATTGTGTACACACGTACTTCGTGTGAGCTGTTGGAGCATTCCAAGAGC
CGGTACTCGAGGAGGAGGCAACAAATTAAATGTTGTGGATTCATTTCTTA
TCTATCTTAGATTATTTTCTATAGATACAAAAGGATTCATTGTGTCACAT
AAAGAAGGGAAAAAAAGAAGTGCAACTCACAGCAGTGACGCGGGTTGTAC
AATTTTCAATGAACGGCGGATAGAACTGAGGAGTTGACCTCATGCCGTCG
GTGAGAAAGGATAGAACCGTGTTCGGGGCACAAGACCGTTAGGGTGTACT
GCCGATCGCGACGCCACTTTGCATACCGTGGTAACTGAAAGACACACAGT
AATTTTTCAAGTTTTTACCCCACCAGGAATAAGCAGGGCCCGCCGTTACG
GAAGTAGTACCGGTGCTATACTTTGGAGTTCGTTGAGAAACAGGAGCTCA
ACTTTTTCACTAAAATTGAGATACAAGGCGCAGCTCAGCGGCAGATCCTA
GACTAACCTCTACCATACAATAATCTATGCTCGACAGCCGTGGCGGTGAA
ATAGAGAACCTGAGCCTCGACCCGATTTTGAGGTGTCCTATGTCCGGTTC
CTTTCCTGAAAGAACCTGGGTTTGTCTCATAGCTGCTGTTTCTACCCCTT
GCGTCGGCGGCTGCTGTCACTGTCTCGCTGAGCTTTGTGTTCGCTCGACG
CTTGCCGGAAAACGTTCGAGGCACGTACAACAGCAGCCGTGGCTCCAATA
TAAGATGATACCTCACGAGAGGGGTCTCCGACACAAGAGGGTCGAAATCG
GTTTGTCACGACTCGACCCGCTATTAGTCCCTCTTATTCCGGTAGTACAA
GAGGGAGCTCCGACATAAGACAGTTGAGGGCTTTTGTCACACGCCACCCA
TTTGTATCGGAGCGATAGCTAGCTGTACCGAACCGCCACTCAAGGAGACG
GCGCGGAACGTGCGAGGATGGGGTGCAGGGCAAGGGAGGAGGTGTGACTT
TGCTACGATGAGGGCGGTGCGTTGCAGCGTCAAGTCGGGGGGAAAACTCA
TGTAAACGCATGCCGAAGTAGTCGTTGGATCGTTGACCTCGGATTATCCC
TACACTCCCGGGACGGAGGAGCGATATGCCGGGTTTTCGCCGGCCCAGGG
GGGGGCACTAGAGAAGGAAGGTGCCCGCAATGTTGACAGACACGCAGTCT
TGTATTGGGCACCAGCACTATCGGACATTCAATGGGGGGGCGTCAATAAC
GCCGGTTGGTTGGCGCCAGCGGCCCTGTGCAGCGCCGGTAAAAAGGTTGG
GCACAGACTGCATCACCCCAGTCATTCTGTAGATTGAAAAGCGCCGGTCC
CTCTGCATAGCGCCGGTCGATGCGCCGGGCACATACCGGCGTTTTTGAGG
ACCCCCCACTGTACTGATAACTACACACGACGTTGCACGGCAGCCCGTTT
GGTCTACAGAGGTGTGGGCCCGCAGTTTTCAGCAAGAAAACTCCTGTATG
AAAAGAGGCCTGGATTTCCACGAAAAATATGAAAATTGGGCGAACAGACA
CAGCTTCGCCGATGATCCCAAACTGAGGTCTACCGAATAATACATTAAGC
TATACTCGGCGGTGGTGGCGAAATAATACAAGAAATTTAGTCCCGACCCG
AGAAGTGACGTTAGTGACGTTTCTCACGTCCGGCCCCGAACTGCTGCATC
TGTGGGTATCCTCGTGAACCTATTTACTTAGCAGCGCGTTGTGGATTCGA
ATCTCTCTCGGGAGCGATCATTTTGAAGCAAAGCATCGTCAAGTCAACTT
GTCTACGCCGCCGCGACGCCCCACGCTTGGTCGATCAAAAAGCATAAATT
ACCAGCTCTTCTCGGGGCTCGAGGTCGCTGGTCCCGGTGTGAGGTTGTGA
GCGTACTACTGCGCGGTAGTACGTAGTTGCTGGAAAATGACTTTGATTCG
CCGCACTTTCTTGTGAACATCACCATCACACCCCCGTCTCTAGATGTTGC
CCCAGTCGATACCAGATGCCTGGCACTAACCCGGATTTCTCCGTCGTACC
TTCGTTCCTACCACCCCCCTTGCCCGCATGCGTGCCCTCATTTGCTCCGC
TACTTTCTTGCTGCTCTTGCCGGTGGTGTGCCGCTGTTCCCACAGAGAAC
CGGGATAAGTTCGTTGTGGTGGGGCTGAAGGGGGCGTCGGTTCGGAAGGA
GTTGCGGTTGGATTCCCCGATTCTGAGGACTCTGCGACGAGGCACGGTGA
GTCCAACTAAGCTAGCTCCGCGCCGCCAGCACCCGCTGCACCAACAGATG
TTGAACCTTACGACACAGCGGAGTAGTGGAAGACGCCACTATGTTGGGAA
ACCCCGCTATTGCAACGTTTTCGGCCAGCCCGTTTGAGCGAAGGTTGTCC
TTCTCCCCTCCGTATTTTCTTGCCGAGTTATTGAGAGCAGGGGATCTTTC
AGCTCTGTCCGTAAGTTGAATGTCTTGGGACATCGTAGATTGTGTACCAA
TGGTATTCGCACAGGGCCTGTCGGTAGTTCCTCGCACGACCCACGATGAA
TGCTTCACTGCGTGTCTGCGGCGGGTTTCCGCACAAAGATTTGTACTCTC
ACGTCGGACGCGGAAAGGGAGGAGAGATGCTGACGAAGACGGAGGGCGAA
AATATTACCTACGGGGTGGCAAGTGACCCAAGTGCCAACCTGGAGTCCCA
CGGCCCCCTACGGTCGCCTTTCTACCGTCGGAGAAACCGTTTCATCCCCG
GTGGGAAGCTTGGAGTTCGTATACGGGTGGAAGTGCGACTACAACAGGTG
TGGGGGTGACGGAGAAATTACATTTTTTGGGGCTCGTCGTCCGTGTACGT
CCATCCAGGTTGTCTCTGTGTCCGAGGTGCGGCAAAGACGAGCGCACATC
GTCAAGCCGGTGGACGGTTGGGCGAGCCTGAGCACGGAAGACGGGTACGG
CATCATCGAGCCGACCAAGAGGTGCTCCAGATACAAGGTGAGGGAGTACA
ACACCTCTTTAGGGTTGCGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6059:3303..8472+

>mRNA_Ecto-sp13_S_contig6059.16703.1 ID=mRNA_Ecto-sp13_S_contig6059.16703.1|Name=mRNA_Ecto-sp13_S_contig6059.16703.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=579bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6059:3303..8472+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGAAGTCGGAATGATGTCGTGTATGAGCGTTGGCTGGTACCGACTGCAAC
AACCAAACTCGGAATGCCCGGAACTCGGAAGCCAATCAACAACATGTACC
CAGGTACCAGACCAACCCAGCCATCCACAGGATCCGACTTAGCTGCTGTT
CACATCGGCTTGACCGCTCCCGGCCTGTGTGAGATGTCCTTTAAACTGCT
ATCTTTATGCGGGTGTGTTGACGATGGTGCCGCTTCGAAGGAAAGGGAAC
AACAGATCGAGTACAACTGCTTCTGCTTCCCGGTAGGGGAAGAGGAGTCC
GTTTTCATCCCAGACGAGAACCGGGATAAGTTCGTTGTGGTGGGGCTGAA
GGGGGCGTCGGTTCGGAAGGAGTTGCGGTTGGATTCCCCGATTCTGAGGA
CTCTGCGACGAGGCACGGTTGTCTCTGTGTCCGAGGTGCGGCAAAGACGA
GCGCACATCGTCAAGCCGGTGGACGGTTGGGCGAGCCTGAGCACGGAAGA
CGGGTACGGCATCATCGAGCCGACCAAGAGGTGCTCCAGATACAAGGTGA
GGGAGTACAACACCTCTTTAGGGTTGCGA
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