mRNA_Ecto-sp13_S_contig6053.16695.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6053.16695.1
Unique NamemRNA_Ecto-sp13_S_contig6053.16695.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6053.16695.1 vs. uniprot
Match: D7FRY7_ECTSI (Aldo/Keto Reductase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRY7_ECTSI)

HSP 1 Score: 79.0 bits (193), Expect = 5.870e-16
Identity = 34/36 (94.44%), Postives = 35/36 (97.22%), Query Frame = -2 
Query:   79 FHRPKLLKKNLDTCLKDLGLPYVDCVLLHYSFAMVP 186
            FHRP+LLKKNLDTCLKDLGLPYVDCV LHYSFAMVP
Sbjct:   87 FHRPELLKKNLDTCLKDLGLPYVDCVQLHYSFAMVP 122
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6053.16695.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FRY7_ECTSI5.870e-1694.44Aldo/Keto Reductase n=2 Tax=Ectocarpus TaxID=2879 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6053contigEcto-sp13_S_contig6053:1911..7219 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size187
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size105
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463843.297906-UTR-Ecto-sp13_S_contig6053:1910..19921681463843.297906-UTR-Ecto-sp13_S_contig6053:1910..1992Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6053 1911..1992 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463843.308979-CDS-Ecto-sp13_S_contig6053:1992..20181681463843.308979-CDS-Ecto-sp13_S_contig6053:1992..2018Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6053 1993..2018 -
1681463843.318785-CDS-Ecto-sp13_S_contig6053:7140..72191681463843.318785-CDS-Ecto-sp13_S_contig6053:7140..7219Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6053 7141..7219 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6053.16695.1prot_Ecto-sp13_S_contig6053.16695.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6053 1993..7219 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6053.16695.1

>prot_Ecto-sp13_S_contig6053.16695.1 ID=prot_Ecto-sp13_S_contig6053.16695.1|Name=mRNA_Ecto-sp13_S_contig6053.16695.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=35bp
HCEARCATSRFSIHARTNVYRHKNEPGNHRERIV*
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mRNA from alignment at Ecto-sp13_S_contig6053:1911..7219-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6053.16695.1 ID=mRNA_Ecto-sp13_S_contig6053.16695.1|Name=mRNA_Ecto-sp13_S_contig6053.16695.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5309bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6053:1911..7219- (Ectocarpus species13 EcNAP12_S_4_19m)
CATTGCGAGGCCCGCTGTGCAACTTCACGCTTCTCAATTCACGCCCGAAC
GAACGTCTACCGCCATAAGAACGAACCAGGTCAGCCCCCATCGTACGTGA
CGACTTGCTCGACTATTTCTCAGGATAGGCGCTGGTCTCGCCCTCATACA
GGCGTCCTCCACCGGGCCTGTACTTCCAGTTGCACTGTTTCATGGAGAGT
AGCGAACCAACGGACAGTGACCAACGGGGCTCACATAAACTGCGCAAACA
TTGAGTGAACCTCTCCCTAAACCCTTTCTGCATCCCACTGCACTTCACTC
CAGCGATTTAGTGAGAAGCAGGTTGTGAGTTTGATTCTCTCTCTAGAGCA
AAACAACATGTATGCGGTGGAAAGCGATATTTCGTAAGTATACATGAAAC
GGATTGGTGGATCCCTACAAAAACCGAGGGCAAGCACCGCGCAGGAGTCT
ACGTCGGGGGACTGGAACAAAACAAATCATTTAGAAGCTCCAATTTGACC
TTCCTCCTGTACGACCCCCGCTGAAACATCACACATTCACCGAAAGGTGT
GTAGACTGGCGTCAGGACACATACGACTAACACAAACACACCACACAACA
GATGAAGGGCGAACAAAAAGGGAGGCACAGCGCGAAAGAGGACAGACACA
TCTCACACAGACCAACCGTGTCTTACCATCCGCAAGTTGCGCTCGCCAAG
CCTGTCGATTGCAGCCATGTCCTCATTCGAGAGCTCGAAGTCATAAACGT
CCTGGGTAGAAGTACATGAACGAACGGTCCAGGTGTTACATTACACACCG
CGATTCGTTCTTGAACAAAGGGGGCGGGAGGGCACTTCAACACAATTGAC
GCTGATCACCGCTCTTCAAATAACATTGCAACTGTCCGCCGGCCTTCCCT
GCTTTAAACCCAAAATCTAACCAGCTACTTTCGTGTTTAGAATATGCTTC
ATGAATGCGACGATACCTGTCAAAAGAGTGCTGCGCCTTTTCACGAGACC
CTCACCTTATTAGCCGAGATCCTTGCAGGTGTGACAGACTTGGGGATCAC
AGTTACGCCACGCTGGAGATGCCAGCGAATAATAACCTGGCCCATGCAAT
ATTTCAAAATTGAGTTTAGCAGAAATCGACACATATACGGTTGACTGGGT
AATCCAAAGCTCTCCAAAACTTTGTCAAATTCAGCGAGGAACTTCCTAGT
TGGGGCCACCTTAAGTCGTCAGTGATGCAAACTACAAGGCTCCAGTGTCA
GATCGTGCCGAGTACGGATGTTCCCAGCGAGAGGAACAGAACGTGCAAAC
GCTCACGCGAGCAGTAGTTCTTGCCCATTTATTGATGAATAAGGTTCCCG
GAATATTCTCGTTATTGTTCTGGTTCGATGGTGCACACCTCCAGTGCCAA
CCTAGCCGTTCACCGTGCAGCAACCTAGCGCCAACGGTGCACAGCAACCT
AGCCCTGCAGCAATAGCCCTACAACCTAGCCCTCACCACTCTTGCGCCGC
GGCTTAGCCTAAACGATACAGCAGCAACCTAGAACTCGCAACAGCAACCT
AGATTTTCGCCCGTGCAGCAACCTAGCGCTGACGGCGCACAACAACCTAG
ATAGCGCCGCGGCTTCCCGCGGCCTAGGCTTTCTTGTGGTACAGCGACCT
AGCACTTCCAATGCTGTAGGTTTGGGTCGAGTCGGTTAGGTTGGGGTTAG
GGATAGGGACAGGGCTACATGGCTAAATGCTAGCTTTGATGCGGTGCAAA
AAAGGGTGCAGCAGTAGCAGCGGGTCGACCCAGCAACCGGTAGATACGAA
AGAAGGATCTCTATCCATCGGGGTACATTTTTCCCGGCGTCCTGCTAACC
CATCAACCAGTAGATTCTCGGGGTATAAACTGCTATTGCACACGGGAAGT
TTCCGAGAACATCATTTTCTCGTCAAAGGGCAAAGTACCGCTCCACGCGA
GAGCCGAACACTACTTGCAGTGGTAGTTCCACGCGGGTCATTGTCGGTTT
TACGTATTGTACATCACCTGAGCAGAGCTCTTGGTCATTCTCTCCGCGAT
CTCGATGATGACGGGATCATCAAGGCAGGATGCAAACTCCTTGTTCACGT
TTCCCAGGGGCGCATATGCTGTGACGTGTATATTTTTTTCTTTGCACCAA
AGGAGAAGCTCCGTGTTGGGAAGATACGGGTGTATCTGTGGCATAAGCAT
GACCGCGAGAGTAACCGAGTGAGATCGGTGGTGAAGTGCTACGGTCTGTA
GACGAGAAGAGAACTTAACACGTCCACGATGCTACAGCCGCTCCTCTCTA
TGCGCCATCGAATCTTGCCGTATCTCAACAACCTCGGCGATATGCGATGA
ATTCCTGCTGTAGATGCGCAAAGAGAACGAGGGTGTACTCAAGTGACGAA
GATTGCAACGGACTCGAATAGCGGACCAAGGAATACAAACAACAACAGTA
CAATCTCTATATTCCCTGTACATTCAGCATCGAAAACAACTGCTATTGTT
GCTGCCGACTAGTTTTGCATCACCGTCTCCATCTCAGGCAGGCCTTGGTT
GTTTTCGTTTATATTCCAGCTGAACACTATCTATCAGAATATCTGCCGAG
ACACGCCGTTCTCGAGTAAAAAATGCCTCTCTGGTCCACGCACAGCTCTG
CTCGACTCGGTAGAGCCGCGCCAGACTCAGCACGATACCTGCTGCGTGTT
AGTAGGATATGTTTCTCGTACAGTACAGCGCCTCCTGCCTCACGCTGCAC
GGACGGTGCATCGATATATAAAATTTTATCATGTTGAACACATGAAACGC
GTGAAGCGCTGCCCCAACCAAAGACACGGCGGCTCCTCAGATACAGGAAA
CGCATTCTATGTGGCGACCGGCACGTGTCCAGAATGAGGGCACCTATGTT
CCAACTGCCACATAGGGTTACCAAGGGTAATTTCTGCATAAAAGGTATTT
CTGGCCGTCGAGGGTTTCAGCATGTGTCACAAGCCTACCTCGACTTGCAG
CACCGAGGGCATGATTTTCGCATCTTCCATCACGTAGGCGAGCTCCTCCT
GTTGTGAATAATCGGGGACCGATAACGCACGAGTGTGCGTCCATTCAAAT
GAAGGCTCTCCAGGATGGGGTGATCATTGGTAACAAGAAATGTGGGTGAA
AGCGCAGTAGAGGTTAGGAAAAGATTTTCTTCCCACCCTCCACCGACGCT
ACGTTTGCGTGATCATTCATCTGCAACTTTGCTTGCGCCTCCTACGAATT
GAACGCTTCTTCCCACTTTCCTAAGCAAGCGGAATCGGCATGTGTCTTGG
TCTCGTTTTCCCACCGTCCCACCTGTCTTAAACCGCTTCGTAATTCCACT
TTCGGATCCAGGTCTCTTTTCCTCTCCCAAGCAAATCACCATACCAACAT
CTCTTTTCCAATTTCAAGCATTCATCACATCAAGTTCTCTTTCCTCTTTC
AAGCAATCCATATAATCGGATGCCTCACCTTCGTAAAGTTGCTCACGCCG
ATCGTCTTCGCAAGTCCACTCTCGACGAACCCCTCCATCTAAATGCGGGA
AGGCAATCAGTTCGTCAACACAAAACAGTGACAACTTTCACCAGAATGTC
GTGCACAATGTCGACAAGAAAGAAATGGGGCTTGTGCGAGATTGGCTGTT
CAGGCCTCAACCAGTACACGTGTATCACATAGCATCAGTCAGACCTACAC
AATATCCCGCACACCAGGTTGCTGTGTTTCAGCACATGGGGTCCCGTGTA
CTACGATTGGTAAGGGAGGCCATCCTCGCATGGAAGAAAAATACGTTCGT
GCGGGAAAACATTGTTTTGAACCTACACGACGGGGCACTGGCGGCCGGCC
GCACAACCGTTTTCACTAATTGGTAGCACGCCAACCAATTCGGCGACCAT
ATCACTAGAAGTGGATCGACTTCCCAACACTCACTGCCTTCCACGTTTGC
TTAAGGTCAACTTCGTCGTCCAGGTGTGCATCCCCATTGGCATGCCGAGG
CACCAAAACCCTGGACAAGAACAAGCATGGGGCAAAAATATGGGAACCAT
TGTGTAACCTCTTCCTGTCTACTTCAAATGAAAATGAAAAAAACACTTTC
TTCAGACAGGCACCACCTTGCTGTCCGCAGAGAGGACGAGTGCGTTCTTG
GCCTCCTCTCTAAAATCACGTCAAAACTGCACAAAAATGTGAAGCAACAT
GACGTTGTACGCTCGTACGCTCTACTGCTGTAGGCATCTACAATTGTGAG
AACGGCGTACGTAACAGCATGCAGATTCAGAAGCAAGGGCAAGGAAAAGG
TATCCTAGGCCACGTCACGTGGCGCGTCTTTTGTTTACCGTTTGATAATT
GATACCGCCAGGATTTCGGTCGTCTCTAGAATAAAAGCTGGTGATCGTCC
ACAATATGAAGCAAAGAGCGCCGCATGCTTTTGTCGATATTGATTGCAGC
GCGTATCGGTCTACTTTCTCGGCGACAACCTTTTGAATCAAGACGAAAGG
ACAGAGACGCCAACCACCGACATGTGTCTTCTCGTGCGTGTACAACTGCC
AACCTTTTGAGACTGTTGAGGTAGGGATCGTTCCGTAGCAAAAAAATCTA
GCTTCAACATGAACGCGCCACGCTGTTCTAGACTTCCTGATGGCTGGATG
ACAGACAAAAGCTGGTTCAGGATTTGGAACCTCACGTTTTTGGACGAACG
GGTACGATAGAGCCAACTCCCCCCGCGCTGTGTCTGCTTCCGTTGTGCCA
ACATTTAGGGGCTGAAATTAAAGTGTTGTACCACACAAATTGGCTCACGC
CGTTGGAGATTTTCAGTTGGTCGAGGTTGCGATTACTACCAAATCTTCAC
ATCCCAGATCAATCGGAAATGACCACCGCTTCTACCGCCGTTACTTATGC
GGCGTATGCCATGACCCTCGCTGAATGCGACTTTTCGCCACATGTTGACA
GTCTCGCTTAGCTCTGGTTGGGTCTACAGTTTAACCAATGTTGGGGGTGA
AACCGAGTTAGAAAATGCAAGTCAAAATCTTTGCGATGCAAAGTTCAAGA
GACCCACAAAAGACCGACACCTGAAAACGGAAACCGAAAACAATCTGCGG
CTACGAGGGCTAAGGAATCAACAAACTGCTGAAGTACTTAGGAGTGTTAA
ATGCATAGATCTTACGGGTGTTGAGTTCAAACTCACGTCTCGTCTGCGCA
GGGAACCATCGCGAACGAATAGTGTAGCAGCACACAATCGACGTACGGGA
GCCCGAGATCTTTCAGGCAGGTGTCCAAGTTCTTCTTGAGCAGCTTGGGC
CGGTGAAAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6053:1911..7219-

>mRNA_Ecto-sp13_S_contig6053.16695.1 ID=mRNA_Ecto-sp13_S_contig6053.16695.1|Name=mRNA_Ecto-sp13_S_contig6053.16695.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=105bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6053:1911..7219- (Ectocarpus species13 EcNAP12_S_4_19m)
CATTGCGAGGCCCGCTGTGCAACTTCACGCTTCTCAATTCACGCCCGAAC
GAACGTCTACCGCCATAAGAACGAACCAGGGAACCATCGCGAACGAATAG
TGTAG
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