mRNA_Ecto-sp13_S_contig6042.16677.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6042.16677.1
Unique NamemRNA_Ecto-sp13_S_contig6042.16677.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig6042.16677.1 vs. uniprot
Match: D7FRV1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRV1_ECTSI)

HSP 1 Score: 672 bits (1735), Expect = 5.010e-227
Identity = 467/714 (65.41%), Postives = 482/714 (67.51%), Query Frame = 1
Query:   40 MLLTTISPTHAQTDADYELVCENDPNLDRGDGLCDDYLNEPLCRYDGGDCCSCTCDRSLLDSTTDDSGYDVYPCGDNLFNCIDPSAPDFDRLPVYGCGSMPSVPPRCPSEGQSQWVVEDTAGASALANAVSNCSGGNFDVDWRGHVFVNTTLWVVDGTSLTVSGAGEDAVVDGGGQTRPFVVVNASLRLDGLAVENGAAEFGGGIFVGGSRLTLNGTRFSNNTALIGGTAYIDAESIVSCVGANEIXXXXXXXXXXXXXXXXXSVSWEAFSFLENQAAAVLIRGASALYWSGDTTFIANGVLASAVTQYRAHTLDILGGSNVSWDGKTTFADGYQGTAVLVQDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHGGTSNSVRSVMSISSAGSVSFSGRTQFVNNTASHSGGAVRVGYGTTLEXXXXXXXXXXXXXXXXXXLYVTDGNVSXXXXXXXXXXXXXXXXXXXXIDTGATVXXXXXXXXXXXXXXXXXXXIGTALEPEVDGSLASLVVNXXXXXXXXXXXXXXXXXKTSGAVSLALEDVVFAXXXXXXXXXXLYISNTAFGPTLVGLTFTGNTAHTGGAVYVTASGV-AVLGDGYPTTFAGCYFADNIADLSGGAIDSSSGDDSIESSDFISNKAVIGGALRLAGNDVWINDCTFDGNAAGTLDGGPAVSNVGDLYVWNSVFRRNYIECPPGSFVDFYESE 2178
            MLL TIS  HAQTDADYELVCEND NLDRGDGLCDDYLNEPLCRYDGGDCCSCTCDRSL+DSTTDDSGYDV+PCGDNLFNCIDPSAPDFDRLPVYGCGSMPSVPPRCPSEGQSQWVVEDTAGASALANAVSNCSGGNFDVDWRGHVFVNTTLWVVDGTSLT                                                                                                                     AVL++                                    SN+SW G+T F +  +   + V+ XXXXXXXXXXXXXX                        HGGTS+SVRSV+SISSAGSVSFSGRTQFVNNTASH+GGAVRVGYG    XXXXXXXXXXXXXXXXXXLYVTDGNVSXXXXXXXXXXXXXXXXXXXXIDTGATVXXXXXXXXXXXXXXXXXXXIGTALEPEV GSLASLVVN                 KTSGAVSLALEDVVF           LYISNTA GPTLVGLTFTGNTAHTGGAVYVTASGV AV GDGYPTTFAGCYFADN ADLSGGAIDSSSGDDSIESSDFISNKAVIGGALRLAGNDV I  CTFDGNAAGT+DGGPAVSNVGDL VWNSVFRRNYIECPPGSFVD+YESE
Sbjct:    1 MLLMTISANHAQTDADYELVCENDSNLDRGDGLCDDYLNEPLCRYDGGDCCSCTCDRSLVDSTTDDSGYDVHPCGDNLFNCIDPSAPDFDRLPVYGCGSMPSVPPRCPSEGQSQWVVEDTAGASALANAVSNCSGGNFDVDWRGHVFVNTTLWVVDGTSLT-------------------------------------------------------------------------------------------------------------------GTAVLVQD-----------------------------------SNLSWSGETLFTNNTESGCIDVRXXXXXXXXXXXXXXX------------------------HGGTSSSVRSVISISSAGSVSFSGRTQFVNNTASHTGGAVRVGYGAXXXXXXXXXXXXXXXXXXXXXLYVTDGNVSXXXXXXXXXXXXXXXXXXXXIDTGATVXXXXXXXXXXXXXXXXXXXIGTALEPEVGGSLASLVVNGSTAFVDNTCEGSGGAIKTSGAVSLALEDVVFTGNSAQSRGGALYISNTAVGPTLVGLTFTGNTAHTGGAVYVTASGVDAVFGDGYPTTFAGCYFADNFADLSGGAIDSSSGDDSIESSDFISNKAVIGGALRLAGNDVSIKYCTFDGNAAGTVDGGPAVSNVGDLDVWNSVFRRNYIECPPGSFVDYYESE 540          
BLAST of mRNA_Ecto-sp13_S_contig6042.16677.1 vs. uniprot
Match: A0A6H5K0E9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K0E9_9PHAE)

HSP 1 Score: 174 bits (442), Expect = 1.550e-41
Identity = 125/284 (44.01%), Postives = 158/284 (55.63%), Query Frame = 1
Query:  121 DRGDGLCDDYLNEPLCRYDGGD----------CCSCTCDRSLLDSTTDDSGYDVYPCGDNLFNCIDPSAPDFDRLPVYGCGSMPSVPPRCPSEGQSQWVVEDTAGASALANAVSNCSGGNFDVDWRGHVFVNTTLWVVDGTSLTVSGAGEDAVVDGGGQTRPFVVVNASLRLDGLAVENGAAEFGGGIFVGGSRLTLNGTRFSNNTAL-IGGTAYIDAESIVSCVGANEIXXXXXXXXXXXXXXXXXSVSWEAFSFLEN----QAAAVLIRGASALYWSGDTTF 927
            D G+GLC++  N   C YDGGD          CC CTC  +L  S T              F+C+DP A D      Y C + P     C +E Q  WVV+D+A A ALA+AV NCSGG+F+V+WRG V V +  +VVDGT+L+++G G  A +DG   TR F VVNA+L L G+ V +GA+  GG I   G+ LTLN T F  NTA   GG  Y+   S + C G     XXXXXXXXXXXXXXXX       S+  N     A A+++ G S+L WS D  F
Sbjct:   73 DIGNGLCEEGNNNVFCSYDGGDVSLVACSSLLCCYCTCSGALCQSVT--------------FDCLDPDADD----EFYECEAAPPTALPCSAEVQQTWVVDDSAQAQALASAV-NCSGGSFEVEWRGTVVVESVFYVVDGTTLSITGDGSSAAIDGNAATRLFTVVNATLHLTGVDVTSGASTTGGAIAAAGATLTLNQTNFLRNTATGNGGAIYLSDGSSMVCSGGGSFTXXXXXXXXXXXXXXXXXXXXXXXSWFGNVAGDSAGAIIVDGESSLSWSEDAIF 337          
BLAST of mRNA_Ecto-sp13_S_contig6042.16677.1 vs. uniprot
Match: D7FHG7_ECTSI (LNR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHG7_ECTSI)

HSP 1 Score: 169 bits (427), Expect = 1.490e-39
Identity = 106/252 (42.06%), Postives = 136/252 (53.97%), Query Frame = 1
Query:   22 KVFWCTMLLTTISPTHAQTDADYELVCENDPNLDRGDGLCDDYLNEPLCRYDGGDCCSCTCDRSLLDSTTDDSGYDVYPCGDNLFNCIDPSAPDFDRLPVYGCGSMPSVPPRCPSEGQSQWVVEDTAGASALANAVSNCSGGNFDVDWRGHVFVNTTLWVVDGTSLTVSGAGE-DAVVDGGGQTRPFVVVNASLRLDGLAVENGAAEFGGGIFVGGSRLTLNGTRFSNNTALIGGTAYIDAESIVSCVGANE 774
            K+F C+      S  H+ T +D   V   D       G CD   N   C +DGGDCC CTC    +DS         Y CG   F+C+DPSA D     +Y CG  P+  P C +E Q  WVVED+A A ALA  V NCSGG+F V+WRG V ++  +++V GT L V+G GE  AV+DG G TR F V NA+LRL G+ + +G +  GG I   G+ L  + T F NN+A   G A    +S VS  G  E
Sbjct: 1950 KIFVCSSSAAAQSKNHSSTTSDCIGVYVTD-------GWCDLENNNAECNWDGGDCCECTC----VDSQ--------YECGIQGFSCLDPSATD-----LYDCGETPAATP-CSAEAQEAWVVEDSAQAQALAANV-NCSGGSFQVEWRGSVSLDAPIFIVHGTDLNVTGGGEASAVIDGNGTTRLFSVDNATLRLRGVELRSGFSAIGGAIAASGATLAFHNTSFVNNSAGTNGGALWLTDSSVSWGGGTE 2175          
BLAST of mRNA_Ecto-sp13_S_contig6042.16677.1 vs. uniprot
Match: A0A6H5K7Z1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7Z1_9PHAE)

HSP 1 Score: 161 bits (408), Expect = 2.670e-37
Identity = 97/213 (45.54%), Postives = 115/213 (53.99%), Query Frame = 1
Query:  127 GDGLCDDYLNEPLCRYDGGDCCSCTCDRSLLDSTTDDSGYDVYPCGDNLFNCIDPSAPDFDRLPVYGCGSMPSVPPRCPSEGQSQWVVEDTAGASALANAVSNCSGGNFDVDWRGHVFVNTTLWVVDGTSLTVSGAGEDAVVDGGGQTRPFVVVNASLRLDGLAVENGAAEFGGGIFVGGSRLTLNGTRFSNNTAL-IGGTAYIDAESIVSCV 762
            GDG C +  N  LC YDGGDCC C+C                  C    F C+DPSA +     ++ C   P +   C ++ Q  WVVE +A A ALA AV NCSGG F+V+WRG V V     VVDGT LTVSGA   AVV+G   TR F VVNA+L L G+ V  G++  GG I    S LTLNGT F  N A   GG  Y+   S V CV
Sbjct:  133 GDGSCSEANNNDLCGYDGGDCCVCSCQG--------------VNCMTTSFECLDPSASE----ELHDCEPSPPLALPCTADAQQTWVVESSAQAQALAAAV-NCSGGLFEVEWRGRVVVGEPFNVVDGTVLTVSGADSSAVVEGNASTRIFTVVNANLYLSGVNVSYGSSTVGGAIAAARSSLTLNGTSFVGNAASSYGGAIYLSDGSSVYCV 326          
BLAST of mRNA_Ecto-sp13_S_contig6042.16677.1 vs. uniprot
Match: D7G2X5_ECTSI (Adhesin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2X5_ECTSI)

HSP 1 Score: 159 bits (403), Expect = 1.080e-36
Identity = 95/213 (44.60%), Postives = 113/213 (53.05%), Query Frame = 1
Query:  127 GDGLCDDYLNEPLCRYDGGDCCSCTCDRSLLDSTTDDSGYDVYPCGDNLFNCIDPSAPDFDRLPVYGCGSMPSVPPRCPSEGQSQWVVEDTAGASALANAVSNCSGGNFDVDWRGHVFVNTTLWVVDGTSLTVSGAGEDAVVDGGGQTRPFVVVNASLRLDGLAVENGAAEFGGGIFVGGSRLTLNGTRFSNNTA-LIGGTAYIDAESIVSCV 762
            GDG C    N  LC YDGGDCC C+C                  C    F C+DPSA +     ++ C   P +   C ++ Q  WVVE +  A ALA AV NCSGG F+V+WRG V V    +VVDGT LT+SGA   AVV+G   TR F VVNA L L  + V  G++  GG I    S LTLNGT F  NTA   GG  Y+   S V CV
Sbjct:   74 GDGSCSKANNNDLCGYDGGDCCVCSCQG--------------VNCMRTSFECLDPSANE----ELHDCEPSPQLALPCTADAQQTWVVESSTQAQALAAAV-NCSGGLFEVEWRGRVVVGQPFYVVDGTVLTISGADSSAVVEGNASTRIFTVVNADLYLSHVNVSYGSSTTGGAIAAARSSLTLNGTNFVGNTASAYGGAIYVSDGSSVYCV 267          
BLAST of mRNA_Ecto-sp13_S_contig6042.16677.1 vs. uniprot
Match: D8LSC0_ECTSI (Polymorphic Outer membrane protein G/I family n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LSC0_ECTSI)

HSP 1 Score: 159 bits (401), Expect = 2.090e-36
Identity = 106/297 (35.69%), Postives = 147/297 (49.49%), Query Frame = 1
Query:   34 CTMLLTTISPTHAQTDADYELVCEN--DPNLD----------RGDGLCDDYLNEPLCRYDGGDCCSCTC----------------------DRSLLDSTTDDSGYDVYPCGDNLFN-------------------CIDPSAPDFDRLPVYGCGSMPSVPPRCPSEGQSQWVVEDTAGASALANAVSNCSGGNFDVDWRGHVFVNTTLWVVDGTSLTVSGA-GEDAVVDGGGQTRPFVVVNASLRLDGLAVENGAAEFGGGIFVGGSRLTLNGTRFSNNTAL-IGGTAYIDAESIVSC 759
            C        P H   D+D++ +  +  DP +           +GDG+C++  N   C YDGGDCC C+C                      D +L+    D +G D +  GD   N                   C+DPSAP+     +Y C + P     CP++ +  WVV D+  A ALA AV NCSGG+F+V+W G V VN T++V DGT LT++GA G +A +DG   TR F VVNA+L + G+ + +GA+  GG I  GGS LT N T F  N A   GG  ++   S+VSC
Sbjct:   61 CCSCTCNDGPLHLCADSDFDCMYPDCGDPAVTSSDAVCYEDVQGDGMCNEENNSAACGYDGGDCCECSCVDGPLFECGSFSIFDCRDPACYDPALVAEFPDCTG-DWFKIGDGACNPENNIASCGYDGGDGGELDCVDPSAPE----ELYECEAPPITTTPCPADSEWNWVVGDSEQALALALAV-NCSGGSFEVEWVGTVVVNETIFVTDGTVLTITGAAGSNAALDGNSVTRLFTVVNAALHVSGINLSHGASISGGAIAAGGSTLTFNQTNFIGNVASGNGGAVFVSDGSLVSC 351          
BLAST of mRNA_Ecto-sp13_S_contig6042.16677.1 vs. uniprot
Match: D7FHH1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHH1_ECTSI)

HSP 1 Score: 145 bits (365), Expect = 4.110e-32
Identity = 87/197 (44.16%), Postives = 112/197 (56.85%), Query Frame = 1
Query:  187 CCSCTCDRSLLDSTTDDSGYDVYPCGDNLFNCIDPSAPDFDRLPVYGCGSMPSVPPRCPSEGQSQWVVEDTAGASALANAVSNCSGGNFDVDWRGHVFVNTTLWVVDGTSLTVSGAGE-DAVVDGGGQTRPFVVVNASLRLDGLAVENGAAEFGGGIFVGGSRLTLNGTRFSNNTALIGGTAYIDAESIVSCVGANE 774
            CC CTC  SL            + CG   F+C+DPSA D     +Y C   P+  P C +E Q  WVVED+A A ALA  V NCSGG+F V+WRG V ++  +++V GT L V+G GE  AV+DG G TR F V NA+LRL G+ + +G++  GG I   G+ L  N T F NN+A   G A    +S VS  G  E
Sbjct:   85 CCECTCVDSL------------FSCGIAGFSCLDPSATD-----LYDCEEPPAATP-CSAEAQQAWVVEDSAQAQALAANV-NCSGGSFQVEWRGSVSLDAPIFIVHGTDLNVTGGGEASAVIDGNGTTRLFSVDNATLRLSGVELRSGSSAIGGAIAASGATLAFNNTSFVNNSAGSNGGALWLTDSSVSWGGGTE 262          
BLAST of mRNA_Ecto-sp13_S_contig6042.16677.1 vs. uniprot
Match: D7FTL7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTL7_ECTSI)

HSP 1 Score: 136 bits (343), Expect = 2.370e-29
Identity = 105/233 (45.06%), Postives = 134/233 (57.51%), Query Frame = 1
Query:  259 CGDNLFNCIDPSAPDFDRLPVYGCGSMPSVPPRCPSEGQSQWVVEDTAGASALANAVSNCSGGNFDVDWRGHVFVNTTLWVVDGTSLTVSGAGEDAVVDGGGQTRPFVVVNASLRLDGLAVENGAAE-FGGGIFVGGSRLTLNGTRFSNNTAL-IGGTAYIDAESIVSCVGANEIXXXXXXXXXXXXXXXXXSVSWEAFSFLENQAA----AVLIRGASALYWSGDTTFIANG 939
            C  +LF+C+DP + +      Y C   P     C +E Q  WVV D+A A ALA AV NCSGG+F+V+WRG V V + ++V DGT +TV+G G  AV+DG   TR F VV+ASL L  + +  GA+   GGGI   GSR+TLN T    N A   GG  Y    S VSC+G     XXXXXXXXXXXXXXXX       ++L N A     A+     S++ WS D  F+ +G
Sbjct:   10 CYSSLFDCLDPGSSNG----FYECQEPPPATLPCSAEVQQSWVVADSAEALALAAAV-NCSGGSFEVEWRGSVVVESPIYVRDGTIVTVTGVGSTAVIDGHAATRLFTVVDASLHLRNVNISYGASRAVGGGIAAAGSRVTLNHTSIVGNRATGHGGAVYASNGSTVSCLGDTAFNXXXXXXXXXXXXXXXXXXXXXGAAWLGNVAGDSGGAIYAGNGSSVSWSDDAVFVESG 237          
BLAST of mRNA_Ecto-sp13_S_contig6042.16677.1 vs. uniprot
Match: A0A6H5JLP6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLP6_9PHAE)

HSP 1 Score: 132 bits (331), Expect = 6.820e-28
Identity = 103/275 (37.45%), Postives = 135/275 (49.09%), Query Frame = 1
Query:  127 GDGLCDDYLNEPLCRYDGGDCCSCTCDRSLLDSTTDDSGYDVYPCGDNLFNCIDPSAPDFDRLPVYGCGSMPSVPPRCPSEGQSQWVVEDTAGASALANAVSNCSGGNFDVDWRGHVFVNTTLWVVDGTSLTVSGAG---EDAVVDGGGQTRPFVVVNASLRLDGLAVENGAAEFGGGIFVGGSRLTLNGTRFSNNTALIGGTAYIDAESIVSCVGANEIXXXXXXXXXXXXXXXXXSVSWEAFSFLENQAAAVLIRGASALYWSGDTTFIANGV 942
            G+GLC    N P C YDGGDCC C+C                + C    F+C+DPS         +      +    C  +   +W+VE+TA A  LANA+ NC+GG FDV+WRG V V  TLW+  GT++ ++G       AV DG G++R F V+N+SL L G+ + NG    GG IF       L    FS  +AL+                 N     XXXXXXXXXXXXXX               A+LIR A ++ WSG+TTFI N +
Sbjct:   57 GNGLCIPDNNTPECGYDGGDCCECSCQPGQ------------FMCL-GRFDCLDPS---------FNTTECVTNTTACAPDLSREWLVENTADAIELANAI-NCTGGTFDVEWRGSVLVPQTLWISQGTTVNITGVATTASPAVADGNGESRIFGVINSSLNLHGMTLSNGHGVVGGAIFS-----ALGTVTFSGGSALVN----------------NSADEHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAILIRSAGSVSWSGNTTFIGNQI 287          
BLAST of mRNA_Ecto-sp13_S_contig6042.16677.1 vs. uniprot
Match: D7FV90_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV90_ECTSI)

HSP 1 Score: 132 bits (331), Expect = 7.420e-28
Identity = 79/204 (38.73%), Postives = 106/204 (51.96%), Query Frame = 1
Query:  127 GDGLCDDYLNEPLCRYDGGDCCSCTCDRSLLDSTTDDSGYDVYPCGDNLFNCIDPSAPDFDRLPVYGCGSMPSVPPRCPSEGQSQWVVEDTAGASALANAVSNCSGGNFDVDWRGHVFVNTTLWVVDGTSLTVSGA---GEDAVVDGGGQTRPFVVVNASLRLDGLAVENGAAEFGGGIFVGGSRLTLNGTRFSNNTALIGGTA 729
            G+GLC    N P C YDGGDCC C+C  +             Y C    F+C+DPS         +      +    C  +   +W+VEDTA A  LANA+ NC+GG FDV+WRG V V  TLWV  GT++ ++G       AV DG G++R F V+N+SL L G+ + NG    GG IF       L    FS ++AL+  +A
Sbjct:  163 GNGLCIPENNIPECEYDGGDCCECSCQPAQ------------YMCL-GRFDCLDPS---------FNTTECVTNTTACSPDLSREWLVEDTADAIELANAI-NCTGGTFDVEWRGSVIVPQTLWVSQGTTVNITGVDTTASPAVADGNGESRIFGVINSSLNLHGMTLSNGHGVVGGAIFS-----ALGTVTFSGSSALVNNSA 338          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6042.16677.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
D7FRV1_ECTSI5.010e-22765.41Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K0E9_9PHAE1.550e-4144.01Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FHG7_ECTSI1.490e-3942.06LNR domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K7Z1_9PHAE2.670e-3745.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2X5_ECTSI1.080e-3644.60Adhesin-like protein n=1 Tax=Ectocarpus siliculosu... [more]
D8LSC0_ECTSI2.090e-3635.69Polymorphic Outer membrane protein G/I family n=3 ... [more]
D7FHH1_ECTSI4.110e-3244.16Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FTL7_ECTSI2.370e-2945.06Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JLP6_9PHAE6.820e-2837.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FV90_ECTSI7.420e-2838.73Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6042contigEcto-sp13_S_contig6042:5601..8184 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score675.6
Seed ortholog evalue2.5e-191
Seed eggNOG ortholog2880.D7FRV1
Model size2187
Hectar predicted targeting categorysignal peptide
Exons2
EggNOG OGs2BFIX@1,2S176@2759
Ec32 ortholog descriptionPectin lyase fold
Ec32 orthologEc-23_004040.1
Cds size2187
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463841.9553597-CDS-Ecto-sp13_S_contig6042:5600..71401681463841.9553597-CDS-Ecto-sp13_S_contig6042:5600..7140Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6042 5601..7140 +
1681463841.9684384-CDS-Ecto-sp13_S_contig6042:7537..81841681463841.9684384-CDS-Ecto-sp13_S_contig6042:7537..8184Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6042 7538..8184 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6042.16677.1prot_Ecto-sp13_S_contig6042.16677.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6042 5601..8184 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6042.16677.1

>prot_Ecto-sp13_S_contig6042.16677.1 ID=prot_Ecto-sp13_S_contig6042.16677.1|Name=mRNA_Ecto-sp13_S_contig6042.16677.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=729bp
MAGAVVQKVFWCTMLLTTISPTHAQTDADYELVCENDPNLDRGDGLCDDY
LNEPLCRYDGGDCCSCTCDRSLLDSTTDDSGYDVYPCGDNLFNCIDPSAP
DFDRLPVYGCGSMPSVPPRCPSEGQSQWVVEDTAGASALANAVSNCSGGN
FDVDWRGHVFVNTTLWVVDGTSLTVSGAGEDAVVDGGGQTRPFVVVNASL
RLDGLAVENGAAEFGGGIFVGGSRLTLNGTRFSNNTALIGGTAYIDAESI
VSCVGANEISHSTALNGGSLFVDGGSSVSWEAFSFLENQAAAVLIRGASA
LYWSGDTTFIANGVLASAVTQYRAHTLDILGGSNVSWDGKTTFADGYQGT
AVLVQDSNLSWSGETLFKNNTESGCIDVRNSHVSWSGVTSFENNHGGTSN
SVRSVMSISSAGSVSFSGRTQFVNNTASHSGGAVRVGYGTTLEWSGPTIF
HNNTASTNGGALYVTDGNVSWSGQTLFDGNSAVEDGGALFIDTGATVTWS
GETTFAGNMATVNGGAIGTALEPEVDGSLASLVVNGSTTFVDNACEGSGG
AIKTSGAVSLALEDVVFADNSAQSRGGALYISNTAFGPTLVGLTFTGNTA
HTGGAVYVTASGVAVLGDGYPTTFAGCYFADNIADLSGGAIDSSSGDDSI
ESSDFISNKAVIGGALRLAGNDVWINDCTFDGNAAGTLDGGPAVSNVGDL
YVWNSVFRRNYIECPPGSFVDFYESEVR*
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mRNA from alignment at Ecto-sp13_S_contig6042:5601..8184+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6042.16677.1 ID=mRNA_Ecto-sp13_S_contig6042.16677.1|Name=mRNA_Ecto-sp13_S_contig6042.16677.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2584bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6042:5601..8184+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCAGGAGCTGTCGTCCAAAAGGTCTTTTGGTGCACGATGTTGCTCAC GACGATCTCGCCAACACACGCGCAAACCGATGCTGACTACGAACTGGTGT GCGAGAATGATCCGAATTTGGATCGAGGCGACGGACTCTGTGATGACTAC TTAAATGAGCCCCTTTGCAGATACGATGGCGGTGATTGTTGCAGCTGCAC CTGCGATCGGTCGCTTTTGGACAGCACAACAGATGACTCCGGCTACGATG TCTACCCATGCGGAGACAACCTGTTCAACTGCATCGATCCTAGTGCTCCG GATTTCGACCGCCTACCCGTCTACGGCTGCGGCAGCATGCCATCGGTTCC CCCTCGCTGCCCATCGGAAGGGCAGAGCCAATGGGTCGTGGAGGACACGG CGGGGGCTTCCGCTCTAGCGAATGCGGTTAGCAACTGCTCCGGGGGAAAT TTCGATGTAGACTGGAGGGGGCACGTCTTTGTCAACACTACGCTTTGGGT GGTCGATGGCACGTCTCTCACGGTGAGCGGAGCGGGGGAAGATGCCGTAG TTGACGGAGGCGGACAAACCAGGCCGTTTGTCGTCGTGAATGCGTCGCTG CGCCTTGACGGCCTAGCCGTGGAGAACGGCGCCGCAGAGTTCGGTGGGGG GATCTTCGTAGGAGGGTCCAGGCTTACTCTCAACGGCACGAGGTTTTCCA ACAACACAGCCTTGATTGGAGGAACGGCTTACATCGATGCTGAGTCGATC GTGTCTTGCGTCGGAGCGAACGAGATATCGCATAGCACTGCTCTCAACGG TGGCAGCCTCTTTGTCGACGGCGGGTCAAGCGTGTCGTGGGAAGCGTTCA GCTTTCTTGAAAACCAAGCAGCTGCTGTGCTTATTCGAGGTGCATCCGCA CTATATTGGAGCGGAGACACCACGTTCATAGCCAATGGCGTGCTCGCCTC AGCCGTGACACAGTACAGAGCGCACACGTTGGACATCTTGGGCGGTTCGA ACGTTTCTTGGGATGGGAAAACGACATTCGCGGACGGTTACCAGGGCACG GCGGTGTTGGTCCAAGACTCGAACTTGTCTTGGAGCGGAGAAACGCTGTT CAAGAACAACACCGAAAGCGGGTGCATAGACGTTAGGAACTCCCACGTTT CATGGAGCGGCGTGACCAGCTTCGAAAACAACCATGGCGGTACTTCAAAT AGTGTTCGGTCGGTCATGTCCATCAGCAGTGCGGGGTCTGTGTCGTTCAG CGGCCGCACACAATTCGTGAACAATACGGCCAGTCATTCCGGGGGGGCAG TTCGTGTCGGGTATGGCACCACCCTAGAGTGGAGCGGGCCAACAATCTTC CACAACAACACCGCCAGCACCAATGGGGGAGCCTTGTACGTCACAGACGG CAATGTTTCTTGGTCTGGCCAAACTTTGTTTGACGGAAATTCCGCAGTCG AAGATGGCGGAGCCTTGTTTATCGACACCGGCGCCACCGTGACCTGGAGC GGAGAAACCACATTCGCAGGAAACATGGCCACTGTCAACGGTAAGTTCTC GTGGGAGTACAGTAGCGAGGAACTCGGGCGTTTCGAGGTCAGAAAAACGA CATGCTATCGAGAGCAATGATGCCTGCACTTGATTGCTCTTGGAAAGGGG AGACATCTGCCATCCGCCGATTAATGCGAAGAACCTTGATGGTCTAGACT CCTTACTGCCTTGTTCAACAAGTCCATTGCTTCACGGGACGTGCTCGTTC TCGGAGAGAATGCCGAAACCTACCGTTGGAATGCCGCCAGAACGATATTG GAAACTGCATTGACCTCAAGCAGGTTTCGCGCACACCAGACGCAAAACTG GTCGCGAGCAGAGCTCGCAACTTTTCCCAATACGTTCGTACAGCTGCTCA ATACCTTTTTACCGATTTCGGCTTCGCACTTCGATAGGAGGCGCCATTGG AACTGCGCTGGAGCCCGAGGTGGACGGATCACTTGCCTCGCTCGTGGTGA ACGGAAGCACGACCTTTGTCGACAATGCCTGTGAAGGCAGCGGTGGCGCG ATTAAGACCTCCGGCGCCGTGAGCTTGGCGCTCGAAGACGTGGTGTTCGC GGATAACTCCGCTCAATCCAGAGGCGGTGCCTTGTACATTTCTAACACTG CGTTTGGACCGACCCTTGTCGGCTTGACGTTCACAGGCAACACAGCTCAC ACCGGCGGAGCGGTTTACGTCACAGCCAGCGGAGTAGCTGTCTTGGGAGA TGGGTATCCCACCACGTTTGCCGGGTGTTACTTTGCGGACAACATTGCGG ACCTGTCAGGCGGAGCGATTGACTCTTCTTCCGGCGACGACAGCATCGAG AGCTCCGACTTCATCAGCAACAAGGCCGTCATAGGAGGGGCGCTACGGCT TGCCGGCAACGACGTATGGATAAATGATTGCACCTTCGACGGCAACGCAG CCGGTACCTTGGACGGAGGACCGGCTGTATCCAACGTCGGCGACCTGTAC GTTTGGAATTCGGTATTCAGGAGGAACTACATAGAGTGCCCTCCGGGATC CTTCGTTGATTTCTACGAGTCAGAGGTACGGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6042:5601..8184+

>mRNA_Ecto-sp13_S_contig6042.16677.1 ID=mRNA_Ecto-sp13_S_contig6042.16677.1|Name=mRNA_Ecto-sp13_S_contig6042.16677.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2187bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6042:5601..8184+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCAGGAGCTGTCGTCCAAAAGGTCTTTTGGTGCACGATGTTGCTCAC
GACGATCTCGCCAACACACGCGCAAACCGATGCTGACTACGAACTGGTGT
GCGAGAATGATCCGAATTTGGATCGAGGCGACGGACTCTGTGATGACTAC
TTAAATGAGCCCCTTTGCAGATACGATGGCGGTGATTGTTGCAGCTGCAC
CTGCGATCGGTCGCTTTTGGACAGCACAACAGATGACTCCGGCTACGATG
TCTACCCATGCGGAGACAACCTGTTCAACTGCATCGATCCTAGTGCTCCG
GATTTCGACCGCCTACCCGTCTACGGCTGCGGCAGCATGCCATCGGTTCC
CCCTCGCTGCCCATCGGAAGGGCAGAGCCAATGGGTCGTGGAGGACACGG
CGGGGGCTTCCGCTCTAGCGAATGCGGTTAGCAACTGCTCCGGGGGAAAT
TTCGATGTAGACTGGAGGGGGCACGTCTTTGTCAACACTACGCTTTGGGT
GGTCGATGGCACGTCTCTCACGGTGAGCGGAGCGGGGGAAGATGCCGTAG
TTGACGGAGGCGGACAAACCAGGCCGTTTGTCGTCGTGAATGCGTCGCTG
CGCCTTGACGGCCTAGCCGTGGAGAACGGCGCCGCAGAGTTCGGTGGGGG
GATCTTCGTAGGAGGGTCCAGGCTTACTCTCAACGGCACGAGGTTTTCCA
ACAACACAGCCTTGATTGGAGGAACGGCTTACATCGATGCTGAGTCGATC
GTGTCTTGCGTCGGAGCGAACGAGATATCGCATAGCACTGCTCTCAACGG
TGGCAGCCTCTTTGTCGACGGCGGGTCAAGCGTGTCGTGGGAAGCGTTCA
GCTTTCTTGAAAACCAAGCAGCTGCTGTGCTTATTCGAGGTGCATCCGCA
CTATATTGGAGCGGAGACACCACGTTCATAGCCAATGGCGTGCTCGCCTC
AGCCGTGACACAGTACAGAGCGCACACGTTGGACATCTTGGGCGGTTCGA
ACGTTTCTTGGGATGGGAAAACGACATTCGCGGACGGTTACCAGGGCACG
GCGGTGTTGGTCCAAGACTCGAACTTGTCTTGGAGCGGAGAAACGCTGTT
CAAGAACAACACCGAAAGCGGGTGCATAGACGTTAGGAACTCCCACGTTT
CATGGAGCGGCGTGACCAGCTTCGAAAACAACCATGGCGGTACTTCAAAT
AGTGTTCGGTCGGTCATGTCCATCAGCAGTGCGGGGTCTGTGTCGTTCAG
CGGCCGCACACAATTCGTGAACAATACGGCCAGTCATTCCGGGGGGGCAG
TTCGTGTCGGGTATGGCACCACCCTAGAGTGGAGCGGGCCAACAATCTTC
CACAACAACACCGCCAGCACCAATGGGGGAGCCTTGTACGTCACAGACGG
CAATGTTTCTTGGTCTGGCCAAACTTTGTTTGACGGAAATTCCGCAGTCG
AAGATGGCGGAGCCTTGTTTATCGACACCGGCGCCACCGTGACCTGGAGC
GGAGAAACCACATTCGCAGGAAACATGGCCACTGTCAACGGAGGCGCCAT
TGGAACTGCGCTGGAGCCCGAGGTGGACGGATCACTTGCCTCGCTCGTGG
TGAACGGAAGCACGACCTTTGTCGACAATGCCTGTGAAGGCAGCGGTGGC
GCGATTAAGACCTCCGGCGCCGTGAGCTTGGCGCTCGAAGACGTGGTGTT
CGCGGATAACTCCGCTCAATCCAGAGGCGGTGCCTTGTACATTTCTAACA
CTGCGTTTGGACCGACCCTTGTCGGCTTGACGTTCACAGGCAACACAGCT
CACACCGGCGGAGCGGTTTACGTCACAGCCAGCGGAGTAGCTGTCTTGGG
AGATGGGTATCCCACCACGTTTGCCGGGTGTTACTTTGCGGACAACATTG
CGGACCTGTCAGGCGGAGCGATTGACTCTTCTTCCGGCGACGACAGCATC
GAGAGCTCCGACTTCATCAGCAACAAGGCCGTCATAGGAGGGGCGCTACG
GCTTGCCGGCAACGACGTATGGATAAATGATTGCACCTTCGACGGCAACG
CAGCCGGTACCTTGGACGGAGGACCGGCTGTATCCAACGTCGGCGACCTG
TACGTTTGGAATTCGGTATTCAGGAGGAACTACATAGAGTGCCCTCCGGG
ATCCTTCGTTGATTTCTACGAGTCAGAGGTACGGTAG
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