mRNA_Ecto-sp13_S_contig6037.16667.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6037.16667.1
Unique NamemRNA_Ecto-sp13_S_contig6037.16667.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig6037.16667.1 vs. uniprot
Match: D8LR26_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR26_ECTSI)

HSP 1 Score: 459 bits (1180), Expect = 2.080e-144
Identity = 257/287 (89.55%), Postives = 260/287 (90.59%), Query Frame = 1
Query:    1 TYMNNTGAAECFNCPERYYCDGSLPRGYEECPIGRYCETGTDVPTNCPAGTYGAQSGLGFESECTACTPGYFCAETGLTAVEGPCAEGYYCPAGSEDSLGKIGETTSHIXXXXXXXXXXVSTPEACIVGTYNPSTQKRAVEDCTACSEGYYCETTGLVEPTGPCHGGHYCKRKVDTAAPTTGITIDSGVSVEYGGDLCPVGTYCGNGTATPLPCLAGTYNDLEGQEECFACPAGYYCEANATAYDSTPXXXXXXXXXXXXXXXXXXXXXXXXANTTMTSSEENCVDA 861
            TYMNNTGAAECF+CPERYYCDGSLPRGYEE                       AQ+GLGFESECTACTPGYFCAETGLTAVEGPCAEGYYCPAGSEDSLGKIGETTSHIXXXXXXXXXXVSTPEACIVGTYNPSTQKRAVEDCTACSEGYYCETTGLVEPTGPCH GHYCKRKVDTAAPTTGITI+SGV  EYGGDLCPVGTYCGNGTATPLPCLAGTYNDLEGQEECFACPAGYYCEANATAYDSTPXXXXXXXXXXXXXXXXXXXXXXXXAN TMTSSEENCVDA
Sbjct: 2118 TYMNNTGAAECFDCPERYYCDGSLPRGYEEXXXXXXXXXXXXXXXXXXXXXXXAQAGLGFESECTACTPGYFCAETGLTAVEGPCAEGYYCPAGSEDSLGKIGETTSHIXXXXXXXXXXVSTPEACIVGTYNPSTQKRAVEDCTACSEGYYCETTGLVEPTGPCHSGHYCKRKVDTAAPTTGITIESGV--EYGGDLCPVGTYCGNGTATPLPCLAGTYNDLEGQEECFACPAGYYCEANATAYDSTPXXXXXXXXXXXXXXXXXXXXXXXXANMTMTSSEENCVDA 2402          
BLAST of mRNA_Ecto-sp13_S_contig6037.16667.1 vs. uniprot
Match: UPI000359E1C1 (uncharacterized protein LOC101861715 n=1 Tax=Aplysia californica TaxID=6500 RepID=UPI000359E1C1)

HSP 1 Score: 168 bits (425), Expect = 3.590e-43
Identity = 83/207 (40.10%), Postives = 106/207 (51.21%), Query Frame = 1
Query:   91 CPIGRYCETGTDVPTNCPAGTYGAQSGLGFESECTACTPGYFCAETGLTAVEGPCAEGYYCPAGSEDSLGKIGETTSHIXXXXXXXXXXVSTPEACIVGTYNPSTQKRAVEDCTACSEGYYCETTGLVEPTGPCHGGHYCKRKVDTAAPTTGITIDSGVSVEYGGDLCPVGTYCGNGTATPLPCLAGTYNDLEGQEECFACPAGYYC 711
            CP GRYCE+G+     CP GT+    GL   SEC  CTPG +C  TGLTAV GPC  G++C  GSE       +    +           +TP  C  GTY  +T    V DC +CS G+YCE+TG    TGPC  G+Y     +T  PT G T          G++ P   YC  G+ +P PC   TY +  G  +C+ CPAGY+C
Sbjct: 5684 CPAGRYCESGSITGVGCPVGTFSFTLGLTNSSECELCTPGQYCGVTGLTAVSGPCWAGFFCSLGSEQRA-PTSQLYGDVCPAGFFCPNGTATPNPCPSGTYLDTTGAGDVGDCLSCSPGFYCESTGQTNTTGPCGAGYYXSLGANTTTPTDGTT----------GNIXPEXXYCEQGSPSPEPCPNATYVNHTGASQCYVCPAGYFC 5879          
BLAST of mRNA_Ecto-sp13_S_contig6037.16667.1 vs. uniprot
Match: A0A662XLF0_9STRA (Ephrin_rec_like domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XLF0_9STRA)

HSP 1 Score: 163 bits (413), Expect = 1.410e-41
Identity = 113/301 (37.54%), Postives = 144/301 (47.84%), Query Frame = 1
Query:    1 TYMNNTGAAECFNCPERYYCDGSLPRGYEECPIGRYCETGTDVPTNCPAGTYGAQSGLGFESE-CTACTPGYFCAETGLTAVEGPCAEGYYCPAGSEDSLGKIGETTSHIXXXXXXXXXXVSTPEACIVGTYNPSTQKRAVEDCTACSEGYYCETTGLVEPTGPCHGGHYCKRKVDTAAPTTGI------TIDS-GVSVEYGGDLCPVGTYCGNGTATPLPCLAGTYNDLEGQEECFACPAGYYCEANATAYDSTPXXXXXXXXXXXXXXXXXXXXXXXXANTTMTSSEENCVDAPAGWYV 879
            TY  +TG A C  CP  ++CDG     Y                                    C  CTPG+FC   GL A    CA G+ CP  SE++ GK  ++ +H+             P  C  GTY+  T     EDC  C EG  C  TGLVEPTG C  G++CKR      P++G+      T++S  +++ +GG  CP G YC  G+ TP PC  G+Y ++ G   C  CPAGY+C      Y    XXXXXXXXXXXXXXXXXXXXXX  +N T       C  AP G ++
Sbjct:  930 TYAVSTGQAVCDGCPMGFFCDGVATDTYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCRNCTPGFFCDSVGLVAPAELCAAGFLCPPRSENAFGKTADSDTHVCPAGAYCPKGTYLPTPCPAGTYSNDTGLVRAEDCVFCDEGAXCADTGLVEPTGWCDAGYFCKRNNTQPTPSSGVVAIVLTTVNSTSLTLFFGGQSCPTGAYCPEGSITPTPCPEGSYTNVTGSSACLPCPAGYFCLLGCDGYLDYEXXXXXXXXXXXXXXXXXXXXXXSFSNRTALQDRSQCTPAPGGTFI 1230          
BLAST of mRNA_Ecto-sp13_S_contig6037.16667.1 vs. uniprot
Match: A0A6P4Z2E1_BRABE (LOW QUALITY PROTEIN: uncharacterized protein LOC109474799 n=1 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P4Z2E1_BRABE)

HSP 1 Score: 162 bits (411), Expect = 2.600e-41
Identity = 99/232 (42.67%), Postives = 121/232 (52.16%), Query Frame = 1
Query:   37 NCPERYYCD----GSLPRGYEE---CPIGRYCETGTDVPTNCPAGTYGAQSGLGFESECTACTPGYFCAETGLTAVEGPCAEGYYCPAGSEDSLGKIGETTSHIXXXXXXXXXXVSTPEACIVGTYNPSTQKRAVEDCTACSEGYYCETTGLVEPTGPCHGGHYCKRKVDTAAPTTGITIDSGVSVEYGGDLCPVGTYCGNGTATPLPCLAGTYNDLEGQEECFACPAGYYC 711
            NC   Y+C      S P   +    CP GRYC +G+ V   CP GT+   +GL   SEC ACTPG++CA+TGLT   G C  G+YC  GS D    +GET    XXXXXXXXXX  TP AC  GT+ P+     + DC  CS GYYCET G    T                  T G+T          GD+CP G YC  G+ +P+PC  GT+ +  G   C+ CPAGYYC
Sbjct: 2084 NCTAGYFCTLGAWNSTPTDGDTGDICPEGRYCPSGSVVGAGCPKGTFSNMTGLTEASECRACTPGHYCADTGLTQESGQCWAGHYCLEGS-DQAKPVGETFGDEXXXXXXXXXXXDTPVACPPGTFLPTRAMEKLSDCVDCSSGYYCETPGQTNVTAEXXXXXXXXXXXXXXXXTDGVT----------GDICPEGHYCELGSPSPVPCGNGTFMNHTGASACYVCPAGYYC 2304          
BLAST of mRNA_Ecto-sp13_S_contig6037.16667.1 vs. uniprot
Match: UPI001E1DF33C (LOW QUALITY PROTEIN: uncharacterized protein LOC123565532 n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DF33C)

HSP 1 Score: 160 bits (405), Expect = 1.660e-40
Identity = 91/248 (36.69%), Postives = 113/248 (45.56%), Query Frame = 1
Query:    4 YMNNTGAAECFNCPERYYCDGSLPRGYEECPIGRYCE----------TGTDVPTN--CPAGTYGAQSGLGFESECTACTPGYFCAETGLTAVEGPCAEGYYCPAGSEDSLGKIGETTSHIXXXXXXXXXXVSTPEACIVGTYNPSTQKRAVEDCTACSEGYYCETTGLVEPTGPCHGGHYCKRKVDTAAPTTGITIDSGVSVEYGGDLCPVGTYCGNGTATPLPCLAGTYNDLEGQEECFACPAGYYC 711
            Y + TG + C  CP  YYC         + PI  Y             GT+  T   CP GTYG  + L   S+CT C PG +C   G+T   G C  GY+C +G+      I   T              +TP  C VGT + ST   +   C AC  GYYC TTGL+EPTGPC+ G+YC     TA P      D G +    GD+C +G YC  GT  P+ C  GT+        C  C AGYYC
Sbjct: 3972 YQDETGQSSCKTCPSGYYCR------IADAPITDYTPYVXXXXXXXPNGTEWATQYGCPKGTYGTSTQLESASQCTDCDPGVYCGSVGMTVTTGNCTAGYWCISGASVPE-PIDGVTGKACPEGSYCDTGTTTPTPCPVGTMSNSTGLSSSGQCPACKGGYYCATTGLIEPTGPCNAGYYCDSGASTATPN-----DGGAT----GDVCTIGHYCPEGTDVPIQCPVGTFMQNTQASVCTNCTAGYYC 4203          
BLAST of mRNA_Ecto-sp13_S_contig6037.16667.1 vs. uniprot
Match: UPI001B88C6AF (LOW QUALITY PROTEIN: uncharacterized protein LOC121388636 n=1 Tax=Gigantopelta aegis TaxID=1735272 RepID=UPI001B88C6AF)

HSP 1 Score: 160 bits (405), Expect = 1.660e-40
Identity = 88/248 (35.48%), Postives = 115/248 (46.37%), Query Frame = 1
Query:    1 TYMNNTGAAECFNCPERYYCDGSLPR------GYEE---CPIGRYCETGTDVPTN--CPAGTYGAQSGLGFESECTACTPGYFCAETGLTAVEGPCAEGYYCPAGSEDSLGKIGETTSHIXXXXXXXXXXVSTPEACIVGTYNPSTQKRAVEDCTACSEGYYCETTGLVEPTGPCHGGHYCKRKVDTAAPTTGITIDSGVSVEYGGDLCPVGTYCGNGTATPLPCLAGTYNDLEGQEECFACPAGYYC 711
            TY +    + C  CPE YYCDG++        G +    C  G YC  GT       CP GTY  Q GL   +ECT C+ G++C + GL A  G C  GY+  +G+       G TT +I           ++   C  GTYNP        +C  C  G YC   G+  P G C   +YC     ++ PT G T          G++CPVG YC  GTATPLPC  G++ D+   + C  C  GYYC
Sbjct: 4176 TYQDEFTQSNCKQCPEGYYCDGTIQNDTICSHGVQNPSLCEPGSYCPPGTKFSAEYRCPNGTYNDQFGLKVIAECTQCSAGHYCGQEGLAAPSGLCQAGYFXSSGASVPTPGDG-TTGNICPKGDYCPAGSNSSTLCPPGTYNPVEGLTDESECKGCEPGQYCPNAGMDSPQGNCSARYYCSGNATSSLPTDGST----------GNVCPVGHYCPEGTATPLPCEPGSFTDVTLNDACSPCTPGYYC 4412          
BLAST of mRNA_Ecto-sp13_S_contig6037.16667.1 vs. uniprot
Match: A0A7M7NCN3_STRPU (Uncharacterized protein n=1 Tax=Strongylocentrotus purpuratus TaxID=7668 RepID=A0A7M7NCN3_STRPU)

HSP 1 Score: 157 bits (398), Expect = 1.400e-39
Identity = 91/265 (34.34%), Postives = 114/265 (43.02%), Query Frame = 1
Query:    1 TYMNNTGA---AECFNCPERYYCDGS---------LPRGY----------------EECPIGRYCETGTDVPTNCPAGTYGAQSGLGFESECTACTPGYFCAETGLTAVEGPCAEGYYCPAGSEDSLGKIGETTSHIXXXXXXXXXXVSTPEACIVGTYNPSTQKRAVEDCTACSEGYYCETTGLVEPTGPCHGGHYCKRKVDTAAPTTGITIDSGVSVEYGGDLCPVGTYCGNGTATPLPCLAGTYNDLEGQEECFACPAGYYC 711
            TY N TG     +C  C    YC G           P  Y                +ECP GRYCETG+     CP GT+  Q+GL    +C  CT G+FC  TGLTAV GPC  GYYC  GS +    +G+    +             PE C  GT+    +   ++DC  CS G YCET G    T  C  G Y     + + P  GIT          GD+     +C  G+  P+PC  GTY +  G   C+ CPAG  C
Sbjct: 6376 TYSNQTGLYNETQCTLCEPGMYCPGEGNITPFDYCAPGHYCTQGASSATPIDGVTGDECPAGRYCETGSITGVGCPKGTFSNQTGLMGADQCWNCTAGHFCGRTGLTAVSGPCWAGYYC-LGSSEEAAPVGKAYGDVCTPGHYCPNGTDVPEPCPPGTFLDIAEAEELDDCVLCSAGSYCETPGKTNVTAECSEGFYXSGGSNQSNPQDGIT----------GDIXXXXYFCELGSVAPVPCPNGTYVNHTGAAACYVCPAGRQC 6629          
BLAST of mRNA_Ecto-sp13_S_contig6037.16667.1 vs. uniprot
Match: UPI000B457A43 (uncharacterized protein LOC110453079 n=1 Tax=Mizuhopecten yessoensis TaxID=6573 RepID=UPI000B457A43)

HSP 1 Score: 157 bits (398), Expect = 1.420e-39
Identity = 92/227 (40.53%), Postives = 115/227 (50.66%), Query Frame = 1
Query:   52 YYC--DGSLPRGYEE-----CPIGRYCETGTDVPTNCPAGTYGAQSGLGFESECTACTPGYFCAETGLTAVEGPCAEGYYCPAGSEDSLGKIGETTSHIXXXXXXXXXXVSTPEACIVGTYNPSTQKRAVEDCTACSEGYYCETTGLVEPTGPCHGGHYCKRKVDTAAPTTGITIDSGVSVEYGGDLCPVGTYCGNGTATPLPCLAGTYNDLEGQEECFACPAGYYC 711
            YYC    S P   +      CP G YCE G   PT CP GTYG ++ L   ++CTACTPG +CA  GL+A +GPC  G+YC   SE S   +G++      XXXXX      P AC  GTY P+ +      C +C  G +C +TG     G C  G+YC      A PT GIT          GD+CP G+ C  G+ T   C  GTY +  G   C+ CP GYYC
Sbjct: 4246 YYCVLKSSTPSPADNITGNVCPQGTYCEEGWSSPTPCPKGTYGNRTMLPALTDCTACTPGQYCASPGLSAPDGPCLAGFYCSNASE-SANPVGQSYGDECPXXXXXPASSYEPLACPAGTYQPNVRMTNDSACLSCEPGKFCNSTGSSAVAGDCTAGYYCIAGATQAEPTGGIT----------GDICPAGSACPAGSPTHNFCPNGTYTNHTGASVCYDCPEGYYC 4461          
BLAST of mRNA_Ecto-sp13_S_contig6037.16667.1 vs. uniprot
Match: A0A5D6XKV9_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XKV9_9STRA)

HSP 1 Score: 156 bits (395), Expect = 3.400e-39
Identity = 104/297 (35.02%), Postives = 130/297 (43.77%), Query Frame = 1
Query:    1 TYMNNTGAAECFNCPERYYCDGSLPRGYEECPIGRYCETGTD-VPTNCPAGTYGAQSGLGFESECTACTPGYFCAETGLTAVEGPCAEGYYCPAGSEDSLGKIGETTSHIXXXXXXXXXXVSTPEACIVGTYNPSTQKRAVEDCTACSEGYYCETTGLVEPTGPCHGGHYCKRKVDTAAPTTGITIDSG---VSVEYGGDLCPVGTYCGNGTATPLPCLAGTYNDLEGQEECFACPAGYYCEANATAYDSTPXXXXXXXXXXXXXXXXXXXXXXXXANTTMTSSEENCVDAPAGWYV 879
            TY    G   C         DG       +         GT  +P     GT+  ++ L   SEC ACTPG++C    L AV G        PA SED  G+     +H              P  C  GTY+ +T   + ++CT C EG YC   GL  PTG C  GHYCKR      P+TG+T  +G    +V +GGD CPVG+YC  G+A+P  C  GTY D  G   C AC  GY+C      Y +  XXXXXXXXXXX              +         C  AP G Y+
Sbjct: 1493 TYALEAGQTSCSPXXXXXXXDGLATDRVLDXXXXXXXXIGTAAIPXXXXXGTFSKRTRLVNASECAACTPGFYCGGVALDAVSGXXXXXXXXPAASEDKFGRTVVNDTHPCSAGAYCPEGTYLPIPCPRGTYSNATALTSAKECTLCDEGSYCADPGLTSPTGLCAAGHYCKRNNTLPNPSTGVTSPTGNVASAVLFGGDRCPVGSYCCAGSASPRQCPEGTYADEPGASVCKACAPGYFCPLGTAVYSTNKXXXXXXXXXXXKRSTEYPCSPGTFGDAAGLQRGSQCSPAPGGMYI 1789          
BLAST of mRNA_Ecto-sp13_S_contig6037.16667.1 vs. uniprot
Match: UPI001459053E (LOW QUALITY PROTEIN: uncharacterized protein LOC117334493 n=1 Tax=Pecten maximus TaxID=6579 RepID=UPI001459053E)

HSP 1 Score: 154 bits (389), Expect = 2.240e-38
Identity = 85/227 (37.44%), Postives = 109/227 (48.02%), Query Frame = 1
Query:   52 YYC--DGSLPRGYEE-----CPIGRYCETGTDVPTNCPAGTYGAQSGLGFESECTACTPGYFCAETGLTAVEGPCAEGYYCPAGSEDSLGKIGETTSHIXXXXXXXXXXVSTPEACIVGTYNPSTQKRAVEDCTACSEGYYCETTGLVEPTGPCHGGHYCKRKVDTAAPTTGITIDSGVSVEYGGDLCPVGTYCGNGTATPLPCLAGTYNDLEGQEECFACPAGYYC 711
            YYC    S P   +      CP G YCE G   PT CP+GTYG ++ L   ++CTACTPG +CA  GL+A +G C  G++C   SE S   +G+T                 P AC  G+Y P+ +      C +C  G +C TTG     G C  G+YC      A PT G T          GD+CP G+ C  G+ T   C  GTY +  G   C+ CP GYYC
Sbjct: 4243 YYCVLKSSTPSPSDNITGNVCPQGTYCEEGWSSPTPCPSGTYGHRNMLPALTDCTACTPGQYCASPGLSAPDGACLAGFFCSNASE-SANPVGQTYGDECPAGFYCPTNSYEPLACPAGSYQPNVRMINESACLSCEPGKFCNTTGASAVAGDCSAGYYCIAGATQAEPTDGTT----------GDICPAGSACPAGSPTHNFCPNGTYTNHTGASVCYDCPEGYYC 4458          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6037.16667.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LR26_ECTSI2.080e-14489.55Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
UPI000359E1C13.590e-4340.10uncharacterized protein LOC101861715 n=1 Tax=Aplys... [more]
A0A662XLF0_9STRA1.410e-4137.54Ephrin_rec_like domain-containing protein n=1 Tax=... [more]
A0A6P4Z2E1_BRABE2.600e-4142.67LOW QUALITY PROTEIN: uncharacterized protein LOC10... [more]
UPI001E1DF33C1.660e-4036.69LOW QUALITY PROTEIN: uncharacterized protein LOC12... [more]
UPI001B88C6AF1.660e-4035.48LOW QUALITY PROTEIN: uncharacterized protein LOC12... [more]
A0A7M7NCN3_STRPU1.400e-3934.34Uncharacterized protein n=1 Tax=Strongylocentrotus... [more]
UPI000B457A431.420e-3940.53uncharacterized protein LOC110453079 n=1 Tax=Mizuh... [more]
A0A5D6XKV9_9STRA3.400e-3935.02Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
UPI001459053E2.240e-3837.44LOW QUALITY PROTEIN: uncharacterized protein LOC11... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6037contigEcto-sp13_S_contig6037:5927..8587 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score453.0
Seed ortholog evalue1.1e-124
Seed eggNOG ortholog2880.D8LR26
Model size885
KEGG koko:K16726,ko:K17751
KEGG Pathwayko04260,ko04261,ko05416,map04260,map04261,map05416
Hectar predicted targeting categoryother localisation
Exons6
EggNOG free text desc.translation initiation factor activity
EggNOG OGsCOG5022@1,KOG0161@2759,KOG1217@1,KOG1217@2759,KOG3529@1,KOG3529@2759
Cds size879
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04812
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6037.16667.1prot_Ecto-sp13_S_contig6037.16667.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6037 5927..8581 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463840.96462-CDS-Ecto-sp13_S_contig6037:5926..60561681463840.96462-CDS-Ecto-sp13_S_contig6037:5926..6056Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6037 5927..6056 -
1681463841.0181465-CDS-Ecto-sp13_S_contig6037:6565..67501681463841.0181465-CDS-Ecto-sp13_S_contig6037:6565..6750Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6037 6566..6750 -
1681463841.0346866-CDS-Ecto-sp13_S_contig6037:6849..69961681463841.0346866-CDS-Ecto-sp13_S_contig6037:6849..6996Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6037 6850..6996 -
1681463841.0444686-CDS-Ecto-sp13_S_contig6037:7183..73181681463841.0444686-CDS-Ecto-sp13_S_contig6037:7183..7318Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6037 7184..7318 -
1681463841.0544102-CDS-Ecto-sp13_S_contig6037:7740..78801681463841.0544102-CDS-Ecto-sp13_S_contig6037:7740..7880Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6037 7741..7880 -
1681463841.0650752-CDS-Ecto-sp13_S_contig6037:8439..85811681463841.0650752-CDS-Ecto-sp13_S_contig6037:8439..8581Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6037 8440..8581 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463841.0748785-UTR-Ecto-sp13_S_contig6037:8581..85871681463841.0748785-UTR-Ecto-sp13_S_contig6037:8581..8587Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6037 8582..8587 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6037.16667.1

>prot_Ecto-sp13_S_contig6037.16667.1 ID=prot_Ecto-sp13_S_contig6037.16667.1|Name=mRNA_Ecto-sp13_S_contig6037.16667.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=293bp
MNNTGAAECFNCPERYYCDGSLPRGYEECPIGRYCETGTDVPTNCPAGTY
GAQSGLGFESECTACTPGYFCAETGLTAVEGPCAEGYYCPAGSEDSLGKI
GETTSHICPEGFYCPAGVSTPEACIVGTYNPSTQKRAVEDCTACSEGYYC
ETTGLVEPTGPCHGGHYCKRKVDTAAPTTGITIDSGVSVEYGGDLCPVGT
YCGNGTATPLPCLAGTYNDLEGQEECFACPAGYYCEANATAYDSTPCPAG
YYCPEGTTFATEHPCPPGTYANTTMTSSEENCVDAPAGWYVAG
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mRNA from alignment at Ecto-sp13_S_contig6037:5927..8587-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6037.16667.1 ID=mRNA_Ecto-sp13_S_contig6037.16667.1|Name=mRNA_Ecto-sp13_S_contig6037.16667.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2661bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6037:5927..8587- (Ectocarpus species13 EcNAP12_S_4_19m)
ACATACATGAACAACACTGGTGCCGCTGAGTGCTTTAACTGCCCCGAGCG GTACTACTGTGACGGTAGCCTCCCCCGGGGATATGAAGAGTGTCCGATCG GCCGATATTGCGAGACTGGCACAGACGTCCCGACCAACTGCCCCGCGGGT AAGAAAATCACCATGTAGAAGGCTACCGTGTTCATAGACGAACACCAACA GCGAAGATTGGCGAAAAAGTCCAGAGGGTCTATCAGGCTGGACAGCGAGT GGGGGAGTGACGTCGAGTACACCACACTTGGAAATCGTTCGAGATGCCGC ACGAAACCGAGCAAGAGCCCAAGCCTTCATATTTCGACGTTCATGCCCTT CCGTTTTCAATACCTACGCGCGTCTAGTCCAACCTGTAGTTTTCTGAACA CCGCATGCTTACACCTCGCCGATTGTGGCACGCCCGCCGGATCGCTCGGT TGTGGAGCACGATGGCAGTACGCCAGAATGGACTTCCGAAGGTAGTATAG TGGTGTAAACGTGGTTTCCGCTGTGTTGTATCCTGGTGGCCATGAATACA GCACGGCTACATGTGGGTGCCCTTCTCGGTTCTGCCCAACCACACGCCCC CTGTTTAAAATTTTTTCCTGATCATGCCCCACTCACCACACACCTTGAAA GCTCGGAATACGGCTCGCTGCCATGCCCGTCCAAAAATCAATACTCCTCT GTTAAAGGGACATACGGCGCGCAGTCAGGGCTTGGTTTCGAGAGCGAGTG TACAGCGTGTACTCCGGGGTACTTCTGCGCCGAAACGGGCCTCACCGCTG TTGAGGGACCCTGCGCCGAAGGCTACTATTGCCCTGCGGGATCGGAGGTG TGTACCGAGGACGTCGTAGGAGGGAGGTGATGTGGGTGGTACCGAGGGTA TTCAAGATTTAAGGGAATGAAGGGAAAGCCTTAGTTCTCTACCACGGGTG TTTTTCTGAACGGATCCCTTCACGTGGATGCATGGAGGACTTGAGAACAC CACGACCTCTGTGGCGGGCGATTGTTGTGACAACGGTGCACCGTAAGTGC TACGTATGCATCGGGGATTCCCGGGGAAATCGAACAACGCGTCGCGCCCG ACGCCCAACCCCTCAATGTTCCCGAAAATCAATACTGTCTCCTCGTGGTA GTCCTTCTTCTCCTTCTGCCCCATCCAGATCACCTCAGATTTTTTAACAT TCCCACCTCCAAATGAGACAAATGTCGCACATCGTTCGTGTCGTATTCCC TAAATCGCTGCTGTGCCAGGACTCGCTCGGCAAAATAGGGGAAACCACGA GCCATATCTGCCCAGAAGGTTTCTATTGCCCGGCCGGGGTATCTACGCCG GAAGCATGTATAGTGGGGACATACAACCCTTCAACGCAGAAGAGAGCGGT AGAGGTAGGTGACTGTTCCGACGGATTTTGCCTCGGGCCAGGCTAGCTGT TACGTTCAGGTTAGGTTCAGATGGTATCTCTGAGCGATGTTCCCGCCTCC TGCTAACCTTATCTGCTCGTGCACTCGGTCGTCGCATCGTTCAGTTCGAC GTCCCGACCACGTAAACCATACCAATCGCTCATATCATCAGGATTGCACG GCCTGTTCCGAGGGCTACTACTGCGAGACCACCGGGCTCGTCGAGCCGAC CGGTCCGTGTCACGGCGGGCACTACTGCAAGCGAAAAGTCGACACGGCCG CTCCGACTACCGGCATCACCATCGACTCCGGGGTGAGTGTTGGGCACTGA ACGTAACGAAATGAAGTTAGTTCACCTTTTGGCTACCGATGTGGAGTAAA GCGACGTTATGCTTTTACCCCCATTTATACACAACAGGTGGAATACGGAG GAGACCTATGCCCGGTCGGGACGTACTGCGGCAATGGTACCGCGACCCCG CTGCCATGCCTAGCGGGAACCTACAACGATCTAGAGGGGCAGGAGGAGTG CTTTGCTTGTCCCGCCGGGTACTATTGCGAGGCCAATGCGACAGCCTACG ACAGCACTCCATGTCCCGCTGGGTGGGTGCAGCTTATTGAAGCGGAAATC AAACCATTAGACTAGTCAGGTAGAAGCCGAAATCAAATCATTAGAGTAAT CAGCGCTGACTAGTCTAATGGTTCGAACTACAAGCTGTCTGACATTTTTC TCGTTGCTGTTTTTGGACTCTGAGCTGTTCATATGAAGATGTCTTGGAAG GCCCATGGCGTCCCTAATACACTTTCTCGTGGACCCAAAGATATGCGGAA GTGTACATGCGCGGCATATGCTCAATATGCTCCTGTGACTCGTCAAGTAG CATGGCAGCAAGACCCGAAAGCGAAAAACAACTCGAACTTCATTATGACG GCAACTTCTTTCGTCTGTCCAGTCGTATCCGACAACACACCCGTGCCTGG CCTACGCACTCCTTATTCGAAGCACCTCGTTGGGGTAGAGCGTTCGACAG AGGAACGTCGGATGAAAATGTATGTGTTCCCTCCTAACACCTTTCGTTGT GTACCCATCGCACTTTGTGCCACACTTTCAGATATTATTGCCCCGAAGGC ACGACGTTCGCGACCGAGCATCCTTGCCCCCCCGGGACGTATGCGAACAC GACCATGACGTCTTCCGAGGAAAACTGTGTCGATGCTCCCGCGGGGTGGT ACGTGGCTGGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6037:5927..8587-

>mRNA_Ecto-sp13_S_contig6037.16667.1 ID=mRNA_Ecto-sp13_S_contig6037.16667.1|Name=mRNA_Ecto-sp13_S_contig6037.16667.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=879bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6037:5927..8587- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAACAACACTGGTGCCGCTGAGTGCTTTAACTGCCCCGAGCGGTACTA
CTGTGACGGTAGCCTCCCCCGGGGATATGAAGAGTGTCCGATCGGCCGAT
ATTGCGAGACTGGCACAGACGTCCCGACCAACTGCCCCGCGGGGACATAC
GGCGCGCAGTCAGGGCTTGGTTTCGAGAGCGAGTGTACAGCGTGTACTCC
GGGGTACTTCTGCGCCGAAACGGGCCTCACCGCTGTTGAGGGACCCTGCG
CCGAAGGCTACTATTGCCCTGCGGGATCGGAGGACTCGCTCGGCAAAATA
GGGGAAACCACGAGCCATATCTGCCCAGAAGGTTTCTATTGCCCGGCCGG
GGTATCTACGCCGGAAGCATGTATAGTGGGGACATACAACCCTTCAACGC
AGAAGAGAGCGGTAGAGGATTGCACGGCCTGTTCCGAGGGCTACTACTGC
GAGACCACCGGGCTCGTCGAGCCGACCGGTCCGTGTCACGGCGGGCACTA
CTGCAAGCGAAAAGTCGACACGGCCGCTCCGACTACCGGCATCACCATCG
ACTCCGGGGTGAGTGTGGAATACGGAGGAGACCTATGCCCGGTCGGGACG
TACTGCGGCAATGGTACCGCGACCCCGCTGCCATGCCTAGCGGGAACCTA
CAACGATCTAGAGGGGCAGGAGGAGTGCTTTGCTTGTCCCGCCGGGTACT
ATTGCGAGGCCAATGCGACAGCCTACGACAGCACTCCATGTCCCGCTGGA
TATTATTGCCCCGAAGGCACGACGTTCGCGACCGAGCATCCTTGCCCCCC
CGGGACGTATGCGAACACGACCATGACGTCTTCCGAGGAAAACTGTGTCG
ATGCTCCCGCGGGGTGGTACGTGGCTGGA
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