mRNA_Ecto-sp13_S_contig6035.16661.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6035.16661.1
Unique NamemRNA_Ecto-sp13_S_contig6035.16661.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig6035.16661.1 vs. uniprot
Match: Q8QNM2_ESV1K (EsV-1-42 n=2 Tax=root TaxID=1 RepID=Q8QNM2_ESV1K)

HSP 1 Score: 321 bits (822), Expect = 1.460e-110
Identity = 160/171 (93.57%), Postives = 166/171 (97.08%), Query Frame = 1
Query:    1 MTTYKAFNSMLSEFFCDLADTFDEYAIIMDAKVMLDGVISTDDCSTVPMETFVGVFKPHADLVMAKDPRLFDVCEIPMITGGGFDMAKEWKDLEEDNREAIWNYIQQLFLTGTTILSMSGELLSSIEQLANGCMKKVENGELTESQAQDPMIILQELVQNTELMSALSTKK 513
            MTTYKAFNSMLSEFF DLADTFDEY IIMDAKVMLDGVISTDDCSTVPMETFV VFKPHA+L+MAKDP LFDVCEIPMITGG FDMAKEWKDLEEDNREAIWNYIQQLFLTGTTILSMSGELL+SIEQLANGCMKKVENGELTESQAQDPMIILQE++QNTELMSAL+TKK
Sbjct:    1 MTTYKAFNSMLSEFFRDLADTFDEYTIIMDAKVMLDGVISTDDCSTVPMETFVDVFKPHAELIMAKDPSLFDVCEIPMITGGDFDMAKEWKDLEEDNREAIWNYIQQLFLTGTTILSMSGELLNSIEQLANGCMKKVENGELTESQAQDPMIILQEIMQNTELMSALNTKK 171          
BLAST of mRNA_Ecto-sp13_S_contig6035.16661.1 vs. uniprot
Match: A0A6H5KJD3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJD3_9PHAE)

HSP 1 Score: 242 bits (618), Expect = 1.010e-73
Identity = 115/146 (78.77%), Postives = 130/146 (89.04%), Query Frame = 1
Query:   16 AFNSMLSEFFCDLADTFDEYAIIMDAKVMLDGVISTDDCSTVPMETFVGVFKPHADLVMAKDPRLFDVCEIPMITGGGFDMAKEWKDLEEDNREAIWNYIQQLFLTGTTILSMSGELLSSIEQLANGCMKKVENGELTESQAQDPM 453
            AFNSMLSEFFCDLADTFDEY +I DAK ML+G+++ D+C+ +PM TFV VFKPHADL+M KDP+LFDVCEI +ITGG FDMAKEW  LE+DNREAIWNYIQQLF  GTTILSMSG++LSSI+ LA GCMKKVENGELTESQAQDPM
Sbjct:  269 AFNSMLSEFFCDLADTFDEYTVITDAKTMLEGLMAADECTEIPMGTFVEVFKPHADLIMTKDPKLFDVCEILLITGGEFDMAKEWTALEDDNREAIWNYIQQLFPAGTTILSMSGKVLSSIQSLAQGCMKKVENGELTESQAQDPM 414          
BLAST of mRNA_Ecto-sp13_S_contig6035.16661.1 vs. uniprot
Match: A0A2E0RC34_9RHOB (Uncharacterized protein n=3 Tax=root TaxID=1 RepID=A0A2E0RC34_9RHOB)

HSP 1 Score: 72.4 bits (176), Expect = 6.850e-13
Identity = 51/153 (33.33%), Postives = 72/153 (47.06%), Query Frame = 1
Query:    1 MTTYKAFNSMLSEFFCDLADTFDEYAIIMDAKVMLDGVISTDDCSTVPMETFVGVFKPHADLVMAKDPRLFDVCEIPMITGGGFDMAKEWKDLEEDNREAIWNYIQQLFLTGTTILSMSGELLSSIEQLANGCMKKVENG--ELTESQAQDPM 453
            MT+  AFN M+ +F  +L  TF E   +       + + ST+    + +  F+    PH + V ++D   F      M      ++   W    E  R AIW YIQ LF+ GTTI S+  E LS IE +A  C  K+EN   EL E+Q    M
Sbjct:    1 MTSVTAFNDMMGQFLTELHKTFPEEKGVKKYIAAFEMMRSTN--GKLIVTGFMDSVSPHIEKVNSRDESFFLENANDMEFLKDVNLKNLWPKASEGTRNAIWQYIQTLFMLGTTITSIPPETLSMIENVAKQCADKMENDGDELDETQLMKSM 151          
BLAST of mRNA_Ecto-sp13_S_contig6035.16661.1 vs. uniprot
Match: A0A2D6FRW8_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2D6FRW8_9ACTN)

HSP 1 Score: 72.4 bits (176), Expect = 7.150e-13
Identity = 48/142 (33.80%), Postives = 73/142 (51.41%), Query Frame = 1
Query:    1 MTTYKAFNSMLSEFFCDLADTFDEYAIIMDAKVMLDG--VISTDDCSTVPMETFVGVFKPHADLVMAKDPRLFDVCEIPMITGGGFDMAKEWKDLEEDNREAIWNYIQQLFLTGTTILSMSGELLSSIEQLANGCMKKVENG 420
            M++  AFN M+ +F  +L  TF E   I   K  + G  ++ T +   V     VGV  P AD + AKD   F      +       + ++W  + +  ++AIW YIQ L++ GTTI S+  + LS IE++A  C  K+ENG
Sbjct:    1 MSSVTAFNDMMGQFLAELHKTFPEEKGI---KKCMSGFEIMRTSNPRLVIDGFMVGV-APFADKISAKDDTFFINESKNLDFIKDIKLEEKWASVSQQTKDAIWQYIQTLYMLGTTISSIPEDTLSMIEKVAKECADKLENG 138          
BLAST of mRNA_Ecto-sp13_S_contig6035.16661.1 vs. uniprot
Match: A0A7S6SXR1_9PHYC (Uncharacterized protein n=1 Tax=Bathycoccus sp. RCC716 virus 3 TaxID=2530040 RepID=A0A7S6SXR1_9PHYC)

HSP 1 Score: 71.6 bits (174), Expect = 1.440e-12
Identity = 45/148 (30.41%), Postives = 72/148 (48.65%), Query Frame = 1
Query:    1 MTTYKAFNSMLSEFFCDLADTFDEYAIIMDAKVMLDGVISTDDCSTVPMETFVGVFKPHADLVMAKDPRLFDVCEIPMITGGGFDMAKEWKDLEEDNREAIWNYIQQLFLTGTTILSMSGELLSSIEQLANGCMKKV---ENGELTES 435
            M +  AFN M+ +F  +L  TF E   +       D  +  +    + ++ F+    P+ + + AKD   F      +    G ++ K W    E+ + AIW Y+Q L++ GTTI S+  + LS IE +A  C  K+   ENGEL E+
Sbjct:    1 MASVTAFNDMMGQFLVELHKTFPEEKGLKKCLSAFD--LMKEANPRLVVDGFMNGVAPYTEQISAKDDSFFIKESKNLDFMKGVNLEKHWGSCSENTKNAIWQYVQTLYMLGTTIKSIPEDTLSMIETVAKECADKLGSGENGELDEA 146          
BLAST of mRNA_Ecto-sp13_S_contig6035.16661.1 vs. uniprot
Match: A0A7S6NYF1_9PHYC (Uncharacterized protein n=1 Tax=Bathycoccus sp. RCC716 virus 2 TaxID=2530039 RepID=A0A7S6NYF1_9PHYC)

HSP 1 Score: 70.9 bits (172), Expect = 2.820e-12
Identity = 43/140 (30.71%), Postives = 68/140 (48.57%), Query Frame = 1
Query:    1 MTTYKAFNSMLSEFFCDLADTFDEYAIIMDAKVMLDGVISTDDCSTVPMETFVGVFKPHADLVMAKDPRLFDVCEIPMITGGGFDMAKEWKDLEEDNREAIWNYIQQLFLTGTTILSMSGELLSSIEQLANGCMKKVENG 420
            M +  AFN M+ +F  +L  TF E   +       D +  T+    V  + F+    P+AD + AKD   F      +    G ++   W    E+ + AIW Y+Q L++ GTTI S+  + LS IE++A  C  ++E G
Sbjct:    1 MASVSAFNEMMGQFLMELHKTFPEEKGLKKCMSAFDLMKETNPKLVV--DGFMVGVTPYADKISAKDDTFFLEESKNLDFMKGVNLKDHWDSCSENTKNAIWQYVQTLYMLGTTIKSIPEDTLSMIEKVAKQCADQMEEG 138          
BLAST of mRNA_Ecto-sp13_S_contig6035.16661.1 vs. uniprot
Match: A0A800EGI3_9CHLR (Uncharacterized protein n=1 Tax=Dehalococcoidia bacterium TaxID=2026734 RepID=A0A800EGI3_9CHLR)

HSP 1 Score: 68.9 bits (167), Expect = 1.430e-11
Identity = 43/138 (31.16%), Postives = 67/138 (48.55%), Query Frame = 1
Query:    1 MTTYKAFNSMLSEFFCDLADTFDEYAIIMDAKVMLDGVISTDDCSTVPMETFVGVFKPHADLVMAKDPRLFDVCEIPMITGGGFDMAKEWKDLEEDNREAIWNYIQQLFLTGTTILSMSGELLSSIEQLANGCMKKVE 414
            MT+  AFN M+ +F  +L  TF E   I   K M    I       + ++ F+    P AD + AKD   F      +       + ++W  +    ++AIW Y+Q L++ GTTI S+  + LS IE++A  C  K+E
Sbjct:    1 MTSVTAFNDMMGQFLAELHKTFPEEKGIK--KCMSGFEIMRTSNPRLVIDGFMTSVTPFADKISAKDETFFLTEAKNLEFLKDVKLEEKWASVSTKTKDAIWQYVQTLYMLGTTISSIPADTLSMIEKVAKECADKLE 136          
BLAST of mRNA_Ecto-sp13_S_contig6035.16661.1 vs. uniprot
Match: E5ESA4_9PHYC (Uncharacterized protein n=3 Tax=unclassified Prasinovirus TaxID=880158 RepID=E5ESA4_9PHYC)

HSP 1 Score: 68.9 bits (167), Expect = 1.430e-11
Identity = 45/147 (30.61%), Postives = 73/147 (49.66%), Query Frame = 1
Query:    1 MTTYKAFNSMLSEFFCDLADTFDEYAIIMDAKVMLDGVISTDDCSTVPMETFVGVFKPHADLVMAKDPRLFDVCEIPMITGGGFDMAKEWKDLEEDNREAIWNYIQQLFLTGTTILSMSGELLSSIEQLANGCMKKV--ENGELTES 435
            MT+  AFN M+ +F  +L  TF E   +       D + +++    V  + F+    P+AD + +KD   F      +    G ++ K W    E+ + AIW Y+Q L++ GTTI S+  + LS IE +A  C  K+  +  EL E+
Sbjct:    1 MTSVTAFNDMMGQFLVELHKTFPEEKGLKKCLSAFDLMKASNPRLVV--DGFMQGVTPYADKISSKDESFFIEESKNLDFMKGVNLEKHWGTASENTKSAIWQYVQTLYMLGTTISSIPEDTLSMIETVAKQCADKMGEDGSELDEA 145          
BLAST of mRNA_Ecto-sp13_S_contig6035.16661.1 vs. uniprot
Match: G9E601_MPSP1 (Uncharacterized protein n=1 Tax=Micromonas pusilla virus SP1 TaxID=373996 RepID=G9E601_MPSP1)

HSP 1 Score: 68.6 bits (166), Expect = 2.040e-11
Identity = 41/142 (28.87%), Postives = 72/142 (50.70%), Query Frame = 1
Query:    1 MTTYKAFNSMLSEFFCDLADTFDEYAIIMDAKVMLDGVISTDDCSTVPMETFVGVFKPHADLVMAKDPR--LFDVCEIPMITGGGFDMAKEWKDLEEDNREAIWNYIQQLFLTGTTILSMSGELLSSIEQLANGCMKKVENG 420
            M +  AFN M+ +F  +L  TF +   I       D + S +    V  + F+    P++D + +KD    L ++  I M+     D+   W  + ++ ++  W Y+Q L++ GTTI S+S + LS IE++A G   ++E G
Sbjct:    1 MASVTAFNDMMGQFLVELHKTFPDEKGIKKMLTSFDLLKSANPRLVV--DGFMSGVSPYSDKISSKDETFLLKEIETIDMLKD--LDIKSYWNRMSQNTKDVTWQYLQTLYMLGTTITSISADTLSQIEEIAKGVASQMEGG 138          
BLAST of mRNA_Ecto-sp13_S_contig6035.16661.1 vs. uniprot
Match: G8DDD4_9PHYC (Uncharacterized protein n=1 Tax=Micromonas pusilla virus PL1 TaxID=373997 RepID=G8DDD4_9PHYC)

HSP 1 Score: 67.4 bits (163), Expect = 5.490e-11
Identity = 46/147 (31.29%), Postives = 73/147 (49.66%), Query Frame = 1
Query:    1 MTTYKAFNSMLSEFFCDLADTFDEYAIIMDAKVMLDGVISTDDCSTVPMETFVGVFKPHADLVMAKDPRLFDVCEIPMITGGGFDMAKE------WKDLEEDNREAIWNYIQQLFLTGTTILSMSGELLSSIEQLANGCMKKVENGE 423
            M +  AFN M+S+F  +L  TF +   I       D + ST+    V  + F+    P+AD +  KD   F + EI  I     D  K+      W+ +  + R+  W Y+Q L++ GTTI S+  + LS IE +A  C  K+++G+
Sbjct:    1 MASVTAFNDMMSQFLVELHKTFPDEKGIKKMLTSFDLLKSTNPRLVV--DAFMKGVSPYADKISTKD-ETFLLTEIETI-----DFLKDLNIKGYWERMTTNTRDVTWQYLQTLYMLGTTITSIPEDTLSMIEGIAKECADKMQDGD 139          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6035.16661.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
Q8QNM2_ESV1K1.460e-11093.57EsV-1-42 n=2 Tax=root TaxID=1 RepID=Q8QNM2_ESV1K[more]
A0A6H5KJD3_9PHAE1.010e-7378.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2E0RC34_9RHOB6.850e-1333.33Uncharacterized protein n=3 Tax=root TaxID=1 RepID... [more]
A0A2D6FRW8_9ACTN7.150e-1333.80Uncharacterized protein n=1 Tax=Acidimicrobiaceae ... [more]
A0A7S6SXR1_9PHYC1.440e-1230.41Uncharacterized protein n=1 Tax=Bathycoccus sp. RC... [more]
A0A7S6NYF1_9PHYC2.820e-1230.71Uncharacterized protein n=1 Tax=Bathycoccus sp. RC... [more]
A0A800EGI3_9CHLR1.430e-1131.16Uncharacterized protein n=1 Tax=Dehalococcoidia ba... [more]
E5ESA4_9PHYC1.430e-1130.61Uncharacterized protein n=3 Tax=unclassified Prasi... [more]
G9E601_MPSP12.040e-1128.87Uncharacterized protein n=1 Tax=Micromonas pusilla... [more]
G8DDD4_9PHYC5.490e-1131.29Uncharacterized protein n=1 Tax=Micromonas pusilla... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6035contigEcto-sp13_S_contig6035:5843..6361 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeViruses
Stop1
Start1
Seed ortholog score324.3
Seed ortholog evalue3.4e-86
Seed eggNOG ortholog654926.Q8QNM2_ESV1K
Model size519
Hectar predicted targeting categoryother localisation
Exons1
EggNOG OGs4QFDP@10239,4QX2X@35237
Ec32 ortholog descriptionEsV-1-42
Ec32 orthologEc-06_006370.1
Cds size519
Best tax leveldsDNA viruses, no RNA stage
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463840.656553-CDS-Ecto-sp13_S_contig6035:5842..63611681463840.656553-CDS-Ecto-sp13_S_contig6035:5842..6361Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6035 5843..6361 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6035.16661.1prot_Ecto-sp13_S_contig6035.16661.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6035 5843..6361 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6035.16661.1

>prot_Ecto-sp13_S_contig6035.16661.1 ID=prot_Ecto-sp13_S_contig6035.16661.1|Name=mRNA_Ecto-sp13_S_contig6035.16661.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=173bp
MTTYKAFNSMLSEFFCDLADTFDEYAIIMDAKVMLDGVISTDDCSTVPME
TFVGVFKPHADLVMAKDPRLFDVCEIPMITGGGFDMAKEWKDLEEDNREA
IWNYIQQLFLTGTTILSMSGELLSSIEQLANGCMKKVENGELTESQAQDP
MIILQELVQNTELMSALSTKKV*
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mRNA from alignment at Ecto-sp13_S_contig6035:5843..6361-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6035.16661.1 ID=mRNA_Ecto-sp13_S_contig6035.16661.1|Name=mRNA_Ecto-sp13_S_contig6035.16661.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=519bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6035:5843..6361- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACAACGTACAAAGCCTTCAACTCCATGCTGTCGGAGTTCTTCTGCGA TCTCGCGGACACTTTCGACGAGTACGCCATTATCATGGACGCAAAGGTCA TGCTGGACGGAGTGATTTCCACCGACGATTGTAGCACAGTGCCGATGGAA ACGTTCGTGGGTGTGTTTAAACCGCACGCGGACCTCGTTATGGCCAAAGA CCCCAGACTGTTTGACGTGTGCGAGATTCCCATGATCACCGGAGGGGGCT TTGACATGGCGAAGGAATGGAAAGACCTCGAAGAGGACAACAGAGAAGCC ATCTGGAACTACATCCAGCAACTTTTCCTTACTGGAACAACCATTTTGTC CATGTCTGGAGAACTTCTCAGCTCCATAGAGCAGTTGGCAAACGGTTGCA TGAAAAAAGTTGAGAACGGGGAGCTCACCGAGAGCCAGGCACAGGACCCG ATGATCATCTTGCAAGAGCTCGTGCAGAATACCGAGCTGATGAGCGCGTT GAGCACCAAAAAGGTTTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6035:5843..6361-

>mRNA_Ecto-sp13_S_contig6035.16661.1 ID=mRNA_Ecto-sp13_S_contig6035.16661.1|Name=mRNA_Ecto-sp13_S_contig6035.16661.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=519bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6035:5843..6361- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACAACGTACAAAGCCTTCAACTCCATGCTGTCGGAGTTCTTCTGCGA
TCTCGCGGACACTTTCGACGAGTACGCCATTATCATGGACGCAAAGGTCA
TGCTGGACGGAGTGATTTCCACCGACGATTGTAGCACAGTGCCGATGGAA
ACGTTCGTGGGTGTGTTTAAACCGCACGCGGACCTCGTTATGGCCAAAGA
CCCCAGACTGTTTGACGTGTGCGAGATTCCCATGATCACCGGAGGGGGCT
TTGACATGGCGAAGGAATGGAAAGACCTCGAAGAGGACAACAGAGAAGCC
ATCTGGAACTACATCCAGCAACTTTTCCTTACTGGAACAACCATTTTGTC
CATGTCTGGAGAACTTCTCAGCTCCATAGAGCAGTTGGCAAACGGTTGCA
TGAAAAAAGTTGAGAACGGGGAGCTCACCGAGAGCCAGGCACAGGACCCG
ATGATCATCTTGCAAGAGCTCGTGCAGAATACCGAGCTGATGAGCGCGTT
GAGCACCAAAAAGGTTTAA
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