mRNA_Ecto-sp13_S_contig6032.16655.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6032.16655.1
Unique NamemRNA_Ecto-sp13_S_contig6032.16655.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig6032.16655.1 vs. uniprot
Match: A0A6H5KNU3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNU3_9PHAE)

HSP 1 Score: 325 bits (834), Expect = 2.140e-107
Identity = 164/173 (94.80%), Postives = 168/173 (97.11%), Query Frame = 1
Query:    1 HEAALALFKHGANIEARDMRGETPLIIAARQAGRQGVTAIVDMLLRCGADETALNPDGRTAAEVVGHHIEYAACPLNKQDVERVRDLLENAPADRAWRRRGFLVLCRAFWIKARRLRAASSNARGIGPRAMSLSIGVRDLVASGELREDDDKGRRKQGCGLVGGGVGERNVQA 519
            HEAALALFKHGANIEARDMRGETPLIIAARQAGRQGVTAIVDMLLRCGADETALNPDGRTAAEVVGHHIEYAACPLNKQD+ERVRDLLENAPADRAWRRRG LVLCRAFWIK+RRLRAASS+ARGIGPRAMS+SIGVR  VA GELREDDDKGRRKQGC LVGGGVGERNVQA
Sbjct:  234 HEAALALFKHGANIEARDMRGETPLIIAARQAGRQGVTAIVDMLLRCGADETALNPDGRTAAEVVGHHIEYAACPLNKQDLERVRDLLENAPADRAWRRRGLLVLCRAFWIKSRRLRAASSSARGIGPRAMSVSIGVRVSVAGGELREDDDKGRRKQGCDLVGGGVGERNVQA 406          
BLAST of mRNA_Ecto-sp13_S_contig6032.16655.1 vs. uniprot
Match: D7G6X8_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6X8_ECTSI)

HSP 1 Score: 313 bits (802), Expect = 5.760e-103
Identity = 158/173 (91.33%), Postives = 161/173 (93.06%), Query Frame = 1
Query:    1 HEAALALFKHGANIEARDMRGETPLIIAARQAGRQGVTAIVDMLLRCGADETALNPDGRTAAEVVGHHIEYAACPLNKQDVERVRDLLENAPADRAWRRRGFLVLCRAFWIKARRLRAASSNARGIGPRAMSLSIGVRDLVASGELREDDDKGRRKQGCGLVGGGVGERNVQA 519
            HEAALAL+KHG+NIEARD+RGETPLIIAARQAGRQGVTAIVDMLLRCGADETALNPDGRTAAEVVGHHIEYAACPLNKQDVERVRDLLENAP DRAWRRRGFLVLCRAFWIKARRLRAASSNA   GPR  SLS G R   A GELREDDDKGRRKQGCGLVGGGVGERNVQA
Sbjct:  185 HEAALALYKHGSNIEARDIRGETPLIIAARQAGRQGVTAIVDMLLRCGADETALNPDGRTAAEVVGHHIEYAACPLNKQDVERVRDLLENAPVDRAWRRRGFLVLCRAFWIKARRLRAASSNASSNGPRVRSLSTGARISGAGGELREDDDKGRRKQGCGLVGGGVGERNVQA 357          
BLAST of mRNA_Ecto-sp13_S_contig6032.16655.1 vs. uniprot
Match: A0A6H5KXK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXK5_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 3.050e-21
Identity = 69/188 (36.70%), Postives = 94/188 (50.00%), Query Frame = 1
Query:   67 TPLIIAARQAGRQGVTAIVDMLLRCGADETALNPDGRTAAEVVGHHIEYAACPLNKQDVERVRDLLENAPADRAWRRRGFLVLCRAFWIKARRLRAAS-SNARGIGPRAMSLSIGVRDLVASGELREDDDKGRRKQGCGLVGGGVGERNVQAGETAAAAAAARISHTLLGRVLEFAEEGLFRAIVGFL 627
            TPL+ A RQAGRQG   +V+ LLR GADET  N  G  A +++G  +E        +DVERVR+LL NAPADRAWRRRG+L++CRA   +    R  S ++   +  R  S +   R    +GE   D+  G                    G  A           ++ +V+   EEG+FR IV +L
Sbjct:  245 TPLMKAGRQAGRQGAAEVVNSLLRAGADETIANVQGNKAVDMIGEDVEEE--DRLTEDVERVRELLANAPADRAWRRRGYLIMCRAQPDRVPERRMTSGTHYTNVARRTRSRAKMARARGIAGESTVDESTG--------------------GNWA----------VVVSKVISLQEEGIFRTIVEYL 400          
BLAST of mRNA_Ecto-sp13_S_contig6032.16655.1 vs. uniprot
Match: A0A6H5JHY9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHY9_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 1.140e-20
Identity = 59/133 (44.36%), Postives = 83/133 (62.41%), Query Frame = 1
Query:    7 AALALFKHGANIEARDMRGETPLIIAARQAGRQGVTAIVDMLLRCGADETALNPDGRTAAEVVGHHIEYAACPLNKQDVERVRDLLENAPADRAWRRRGFLVLCRAFWIKARRL---RAASSNARGIGPRAMS 396
            A +AL +HGA++  ++   +TPL + A +AG  G   +VD+LLR GADETA++ +G TAA++V    E +      +DV+RVR LL  APADRAWRRRGFL+L RA +   R     R + + A G+  R  S
Sbjct:  604 AGIALLRHGASVGKKNAAAQTPLHLVAAKAGSPGTAEMVDLLLRRGADETAVSENGHTAADMVVLKTEESDSLA--EDVDRVRKLLARAPADRAWRRRGFLILSRAHYPGGRVQFGHRTSQAPAAGVAKRTRS 734          
BLAST of mRNA_Ecto-sp13_S_contig6032.16655.1 vs. uniprot
Match: D7FYD0_ECTSI (Ankyrin repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYD0_ECTSI)

HSP 1 Score: 98.2 bits (243), Expect = 1.840e-20
Identity = 75/185 (40.54%), Postives = 95/185 (51.35%), Query Frame = 1
Query:   82 AARQAGRQGVTAIVDMLLRCGADETALNPDGRTAAEVVGHHIEYAACPLNKQDVERVRDLLENAPADRAWRRRGFLVLCRAFWIKARRLRA--ASSNARGIGPRAMSLSIGVR-DLVASGELREDDDKGRRKQGCGLVGGGVGERNVQAGETAAAAAAARISHTLLGRVLEFAEEGLFRAIVGFL 627
            AA  AGRQG   +VD+LLR GADET  + +G+  A+ VGH +E     L   +V  V +LL NAPADRAWRRRG LVLCRA W++  RLR         G+  R  S +   R D V +G  R            G   GG G+    A +                RV+E  EEG+FR++VGFL
Sbjct:  268 AASYAGRQGSAELVDLLLRRGADETTPDRNGQQPADRVGHCMELGDVLLG-HEVVLVHELLANAPADRAWRRRGLLVLCRA-WLRRSRLRQEDGGDTRGGLSRRTRSRAKLARSDAVGAGCRR------------GTPEGGTGDEWRSASK----------------RVVELEEEGIFRSVVGFL 422          
BLAST of mRNA_Ecto-sp13_S_contig6032.16655.1 vs. uniprot
Match: D7FKL4_ECTSI (Ankyrin repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKL4_ECTSI)

HSP 1 Score: 89.0 bits (219), Expect = 2.910e-17
Identity = 51/103 (49.51%), Postives = 68/103 (66.02%), Query Frame = 1
Query:   19 LFKHGANIEARDMRGETPLIIAARQAGRQGVTAIVDMLLRCGADETALNPDGRTAAEVVGHHI-EYAACPLNKQDVERVRDLLENAPADRAWRRRGFLVLCRA 324
            L KHGA++ A+ + G + L   A +AG+QG+  +VD+LLR GADET +  +G  AA+ +G  + E    P   ++ E VR LL NAPADRAWRRR  LVLCRA
Sbjct:  248 LLKHGADVNAQTVGGTSVLEYVATRAGKQGIVEVVDLLLRWGADETHVAGNGMRAADAIGMKVPEEDRIP---EEFEGVRKLLANAPADRAWRRRCSLVLCRA 347          
BLAST of mRNA_Ecto-sp13_S_contig6032.16655.1 vs. uniprot
Match: D8LNI8_ECTSI (EsV-1-8 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNI8_ECTSI)

HSP 1 Score: 86.3 bits (212), Expect = 3.670e-17
Identity = 78/234 (33.33%), Postives = 111/234 (47.44%), Query Frame = 1
Query:   16 ALFKHGANIEARDMRGETPLIIAARQAGRQGVTAIVDMLLRCGADETALNPDGRTAAE--------VVGHHIEYAACPLNKQDVERVRDLLENAPADRAWRRRGFLVLCRAFWIKARRLRAASSNARGIGPRAMSLSIGVRDLVASGELREDD--DKGRRKQGCG---LVGGGVGERNVQAG----ETAAAAAAARISHTLLGR-------------VLEFAEEGLFRAIVGFL 627
            ALF+HGA +  R  +G TPL     +   +G+ A VDMLLR GADET LN  G + A+        V+GH+      P  + +++R R LL  APADRAWRRRG+LV+ R+   KA+  +  SS     G       +G  ++  S  +   D    G  + G G     GGG   +++ AG       +    A     ++G              +L    EG+FRA+VGFL
Sbjct:    3 ALFQHGAQVGVRGNQGYTPLHETCWER-HEGLEAAVDMLLRWGADETTLNYGGASPADFLGGRYGKVIGHN------PAPQDEIDRTRLLLSRAPADRAWRRRGWLVMLRSRDSKAQEGKCRSSGGYDHGDGG---EVGGSEMARSEGMAGADYGRPGTTRNGAGGEVEAGGGEEVQDIAAGLLGLRRKSVVHTASNDGCVVGAEGGEEGLRLEVLLLLGLGLEGVFRAVVGFL 226          
BLAST of mRNA_Ecto-sp13_S_contig6032.16655.1 vs. uniprot
Match: D8LS36_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS36_ECTSI)

HSP 1 Score: 85.5 bits (210), Expect = 7.680e-16
Identity = 51/109 (46.79%), Postives = 70/109 (64.22%), Query Frame = 1
Query:    4 EAALALFKHGANIEARDMRGETPLIIAARQAGRQGVTAIVDMLLRCGADETALNPDGRTAAEVVGHHI-EYAACPLNKQDVERVRDLLENAPADRAWRRRGFLVLCRAF 327
            +A   L  HGA++ A+D  G TPL +A  +   +G+ A VD+LLR GADETALN  G+T A ++  H  E      ++ ++ RVR LL  APADRAWRRR +LV+ R+F
Sbjct:  320 KAMHTLLWHGASLTAQDTEGNTPLHVACYRQ-HKGLEAPVDLLLRWGADETALNNAGKTPAGLLDEHDNENDRTTCSEAEINRVRMLLARAPADRAWRRRCWLVMLRSF 427          
BLAST of mRNA_Ecto-sp13_S_contig6032.16655.1 vs. uniprot
Match: A0A6H5JWW4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWW4_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 1.740e-15
Identity = 74/209 (35.41%), Postives = 104/209 (49.76%), Query Frame = 1
Query:    4 EAALALFKHGANIEARDMRGETPLIIAARQAGRQGVTAIVDMLLRCGADETALNPDGRTAAEVVGHHI-EYAACPLNKQDVERVRDLLENAPADRAWRRRGFLVLCRAFWIKARRLRAASSNARGIGPRAMSLSIGVRDLVASGELREDDDKGRRKQGCGLVGGGVGERNVQAGETAAAAAAARISHTLLGRVLEFAEEGLFRAIVGFL 627
            +A   L  HGA++ A+D+ G TPL +A  +    G+ A VD+LLR GADETALN DG+T A+++  H  E      ++ ++ERVR LL  APAD+A RRR +LV+ R+F   AR  RA +           S   G RD                 +    +  G GE  V  G    A        +++  V+    E +FR+IVGFL
Sbjct:  534 KAMNTLLGHGASLTAQDVDGNTPLHLACYRQD-SGLEAPVDLLLRWGADETALNNDGKTPADLLDEHDNENDRTTCSEAEIERVRLLLARAPADQARRRRCWLVMLRSF---ARTTRATTDETGDA--HEGSNDAGDRDXXXCXXXXXXXXXXXXXRVRSPM-NGAGEVGVDGGAGGLA--------SIVNSVVGLEPEEVFRSIVGFL 727          
BLAST of mRNA_Ecto-sp13_S_contig6032.16655.1 vs. uniprot
Match: A0A6H5KFY7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFY7_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 6.260e-15
Identity = 48/106 (45.28%), Postives = 67/106 (63.21%), Query Frame = 1
Query:    4 EAALALFKHGANIEARD-MRGETPLIIAARQAGRQGVTAIVDMLLRCGADETALNPDGRTAAEVVGHHIEYAACPLNKQDVERVRDLLENAPADRAWRRRGFLVLC 318
            EA LAL + GAN+ +++ + G +PL  A R+          D+LLR GADETA++ D +T   ++ H I + A   ++Q +ERV +LL  AP DRAWRRRGFLV C
Sbjct:  139 EAMLALLQLGANVNSKNTINGLSPLCSACREGHHDAA----DLLLRWGADETAVDSDEKTIVSMMTHRI-FRAAVASRQRLERVSELLARAPQDRAWRRRGFLVPC 239          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6032.16655.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KNU3_9PHAE2.140e-10794.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G6X8_ECTSI5.760e-10391.33Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
A0A6H5KXK5_9PHAE3.050e-2136.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHY9_9PHAE1.140e-2044.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FYD0_ECTSI1.840e-2040.54Ankyrin repeat protein n=2 Tax=Ectocarpus TaxID=28... [more]
D7FKL4_ECTSI2.910e-1749.51Ankyrin repeat protein n=2 Tax=Ectocarpus TaxID=28... [more]
D8LNI8_ECTSI3.670e-1733.33EsV-1-8 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D8LS36_ECTSI7.680e-1646.79Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
A0A6H5JWW4_9PHAE1.740e-1535.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFY7_9PHAE6.260e-1545.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6032contigEcto-sp13_S_contig6032:1..630 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score313.9
Seed ortholog evalue5.6e-83
Seed eggNOG ortholog2880.D7G6X8
Model size630
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
Ec32 ortholog descriptionAnkyrin-repeat protein
Ec32 orthologEc-01_011840.1
Cds size630
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463840.4183557-CDS-Ecto-sp13_S_contig6032:0..6301681463840.4183557-CDS-Ecto-sp13_S_contig6032:0..630Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6032 1..630 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6032.16655.1prot_Ecto-sp13_S_contig6032.16655.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6032 1..630 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6032.16655.1

>prot_Ecto-sp13_S_contig6032.16655.1 ID=prot_Ecto-sp13_S_contig6032.16655.1|Name=mRNA_Ecto-sp13_S_contig6032.16655.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=210bp
HEAALALFKHGANIEARDMRGETPLIIAARQAGRQGVTAIVDMLLRCGAD
ETALNPDGRTAAEVVGHHIEYAACPLNKQDVERVRDLLENAPADRAWRRR
GFLVLCRAFWIKARRLRAASSNARGIGPRAMSLSIGVRDLVASGELREDD
DKGRRKQGCGLVGGGVGERNVQAGETAAAAAAARISHTLLGRVLEFAEEG
LFRAIVGFL*
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mRNA from alignment at Ecto-sp13_S_contig6032:1..630+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6032.16655.1 ID=mRNA_Ecto-sp13_S_contig6032.16655.1|Name=mRNA_Ecto-sp13_S_contig6032.16655.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=630bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6032:1..630+ (Ectocarpus species13 EcNAP12_S_4_19m)
CACGAGGCCGCCTTGGCCTTATTCAAGCACGGGGCAAACATCGAGGCGAG GGACATGCGTGGCGAGACGCCTCTGATAATTGCGGCCAGACAGGCCGGGA GGCAAGGCGTCACGGCAATAGTTGATATGCTGCTGAGATGCGGAGCCGAC GAAACGGCGCTCAATCCGGACGGTCGGACCGCAGCAGAGGTAGTCGGTCA CCATATTGAATACGCCGCGTGTCCGCTCAACAAGCAGGACGTGGAGCGCG TGCGCGACCTCTTGGAGAATGCTCCCGCGGACAGGGCGTGGCGCCGCCGA GGATTCCTGGTCCTTTGCCGTGCATTCTGGATCAAGGCACGGCGTTTGAG AGCTGCCAGCAGCAATGCCCGTGGCATTGGACCCCGGGCCATGAGCCTTT CCATAGGTGTACGTGATTTAGTTGCAAGCGGCGAGTTAAGGGAGGACGAC GACAAGGGCAGAAGGAAGCAGGGATGCGGTCTCGTCGGTGGCGGCGTGGG CGAGCGTAATGTTCAAGCCGGTGAGACTGCTGCCGCTGCTGCTGCTGCTC GTATTTCACACACTCTACTCGGGAGAGTGCTGGAGTTTGCGGAGGAGGGT CTGTTCCGCGCCATCGTGGGTTTCCTGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6032:1..630+

>mRNA_Ecto-sp13_S_contig6032.16655.1 ID=mRNA_Ecto-sp13_S_contig6032.16655.1|Name=mRNA_Ecto-sp13_S_contig6032.16655.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=630bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6032:1..630+ (Ectocarpus species13 EcNAP12_S_4_19m)
CACGAGGCCGCCTTGGCCTTATTCAAGCACGGGGCAAACATCGAGGCGAG
GGACATGCGTGGCGAGACGCCTCTGATAATTGCGGCCAGACAGGCCGGGA
GGCAAGGCGTCACGGCAATAGTTGATATGCTGCTGAGATGCGGAGCCGAC
GAAACGGCGCTCAATCCGGACGGTCGGACCGCAGCAGAGGTAGTCGGTCA
CCATATTGAATACGCCGCGTGTCCGCTCAACAAGCAGGACGTGGAGCGCG
TGCGCGACCTCTTGGAGAATGCTCCCGCGGACAGGGCGTGGCGCCGCCGA
GGATTCCTGGTCCTTTGCCGTGCATTCTGGATCAAGGCACGGCGTTTGAG
AGCTGCCAGCAGCAATGCCCGTGGCATTGGACCCCGGGCCATGAGCCTTT
CCATAGGTGTACGTGATTTAGTTGCAAGCGGCGAGTTAAGGGAGGACGAC
GACAAGGGCAGAAGGAAGCAGGGATGCGGTCTCGTCGGTGGCGGCGTGGG
CGAGCGTAATGTTCAAGCCGGTGAGACTGCTGCCGCTGCTGCTGCTGCTC
GTATTTCACACACTCTACTCGGGAGAGTGCTGGAGTTTGCGGAGGAGGGT
CTGTTCCGCGCCATCGTGGGTTTCCTGTGA
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