mRNA_Ecto-sp13_S_contig603.16648.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig603.16648.1
Unique NamemRNA_Ecto-sp13_S_contig603.16648.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig603.16648.1 vs. uniprot
Match: D8LNZ3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNZ3_ECTSI)

HSP 1 Score: 222 bits (565), Expect = 3.000e-73
Identity = 111/115 (96.52%), Postives = 115/115 (100.00%), Query Frame = 1 
Query:    1 MARRCESAAVMVACLIATFLAGLHGVNASTGGETSGFMAFAEGIATAARDKILECSGAEPDSHLPLIVLGAMGAALVAFTLYLSRLYFDRDPYMFNGGKMGKLEAQSIYTNKKRC 345
            MARRCESAAVMVACLIATFLAGLHGVNASTGGETSGFMAFAEGIATAARDKILECSGAEPDSHLPLIVLGAMGAALVAFTLYL+RL+FDRDPY+FNGGKMGKLEAQS+YTNKKRC
Sbjct:    1 MARRCESAAVMVACLIATFLAGLHGVNASTGGETSGFMAFAEGIATAARDKILECSGAEPDSHLPLIVLGAMGAALVAFTLYLTRLFFDRDPYVFNGGKMGKLEAQSVYTNKKRC 115
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig603.16648.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LNZ3_ECTSI3.000e-7396.52Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig603contigEcto-sp13_S_contig603:1375..2163 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size348
Hectar predicted targeting categorysignal peptide
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_000510.1
Cds size348
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463839.515342-CDS-Ecto-sp13_S_contig603:1374..16581681463839.515342-CDS-Ecto-sp13_S_contig603:1374..1658Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig603 1375..1658 -
1681463839.525439-CDS-Ecto-sp13_S_contig603:2099..21631681463839.525439-CDS-Ecto-sp13_S_contig603:2099..2163Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig603 2100..2163 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig603.16648.1prot_Ecto-sp13_S_contig603.16648.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig603 1375..2163 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig603.16648.1

>prot_Ecto-sp13_S_contig603.16648.1 ID=prot_Ecto-sp13_S_contig603.16648.1|Name=mRNA_Ecto-sp13_S_contig603.16648.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=116bp
MARRCESAAVMVACLIATFLAGLHGVNASTGGETSGFMAFAEGIATAARD
KILECSGAEPDSHLPLIVLGAMGAALVAFTLYLSRLYFDRDPYMFNGGKM
GKLEAQSIYTNKKRC*
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mRNA from alignment at Ecto-sp13_S_contig603:1375..2163-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig603.16648.1 ID=mRNA_Ecto-sp13_S_contig603.16648.1|Name=mRNA_Ecto-sp13_S_contig603.16648.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=789bp|location=Sequence derived from alignment at Ecto-sp13_S_contig603:1375..2163- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCACGACGATGTGAATCCGCCGCGGTGATGGTAGCTTGCCTCATCGC
TACATTCCTCGCAGGTGAGTCCAGCAGCTGGTACTGATTGCCAAGGGTCG
GTACTGAGCTGTGTGTGGCAGTTTGTGACAGTACGCTTTCAAGCTCGAAG
ACATCGCGATAGTCTGCCGCAAAAGTGTGCTGCAGAGTGTTTTGCTGCCG
CATATCTATGCACCTTAAAAGCGTGCTCTGGTTCCATCACTCAAGCCTCG
CTCTCTCTCCTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCC
CTCCCTCCCTTTCGTACACGCCAAATGTACACAGCTCTTGTAGCTAGCGA
TGCAATTATTTGACCCTACTAGCAACCCTGGTCGGGGCGCATTGATCCGA
AAGCAACACGGCGATCGGTACAGAAAATCTCGGTTACCTGCACACTATAA
TATATCCCCGTGTCATCAATTCCCATTCCCTTACATCTGATCGAAACGCG
GGCAGGCTTGCATGGAGTCAACGCATCGACTGGCGGAGAAACTAGCGGTT
TCATGGCTTTCGCGGAGGGGATCGCAACTGCGGCTCGTGACAAGATATTG
GAGTGCTCCGGAGCGGAACCCGATTCGCACTTGCCGCTGATCGTACTCGG
GGCCATGGGAGCCGCGTTGGTGGCCTTCACGCTTTACCTCTCGCGCCTGT
ACTTCGACAGAGATCCGTATATGTTTAACGGGGGCAAGATGGGGAAGCTG
GAAGCGCAGTCAATTTACACCAACAAGAAGCGCTGCTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig603:1375..2163-

>mRNA_Ecto-sp13_S_contig603.16648.1 ID=mRNA_Ecto-sp13_S_contig603.16648.1|Name=mRNA_Ecto-sp13_S_contig603.16648.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=348bp|location=Sequence derived from alignment at Ecto-sp13_S_contig603:1375..2163- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCACGACGATGTGAATCCGCCGCGGTGATGGTAGCTTGCCTCATCGC
TACATTCCTCGCAGGCTTGCATGGAGTCAACGCATCGACTGGCGGAGAAA
CTAGCGGTTTCATGGCTTTCGCGGAGGGGATCGCAACTGCGGCTCGTGAC
AAGATATTGGAGTGCTCCGGAGCGGAACCCGATTCGCACTTGCCGCTGAT
CGTACTCGGGGCCATGGGAGCCGCGTTGGTGGCCTTCACGCTTTACCTCT
CGCGCCTGTACTTCGACAGAGATCCGTATATGTTTAACGGGGGCAAGATG
GGGAAGCTGGAAGCGCAGTCAATTTACACCAACAAGAAGCGCTGCTGA
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