mRNA_Ecto-sp13_S_contig6007.16611.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6007.16611.1
Unique NamemRNA_Ecto-sp13_S_contig6007.16611.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig6007.16611.1 vs. uniprot
Match: D7FZ10_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZ10_ECTSI)

HSP 1 Score: 197 bits (501), Expect = 2.770e-59
Identity = 98/101 (97.03%), Postives = 101/101 (100.00%), Query Frame = 1
Query:    1 QVGATAYLESYVDDTDVIDDSHAELLIVVLWTAITIGRLAGLQDQRHLTLPRLYRHSTILFLCGAAAAAAILVFQSSAFVLWTGIAAYGLFNGPTVGYCYD 303
            +VGATAYLESYVDDTDVID+SHAELLIVVLWTAITIGRLAGLQDQRHLTLPRLYRHSTILFLCGAAAAAAILVFQSSAFVLWTGIAAYGL+NGPTVGYCYD
Sbjct:  285 KVGATAYLESYVDDTDVIDESHAELLIVVLWTAITIGRLAGLQDQRHLTLPRLYRHSTILFLCGAAAAAAILVFQSSAFVLWTGIAAYGLYNGPTVGYCYD 385          
BLAST of mRNA_Ecto-sp13_S_contig6007.16611.1 vs. uniprot
Match: D7G4N2_ECTSI (Similar to sodium-dependent glucose transporter 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4N2_ECTSI)

HSP 1 Score: 162 bits (409), Expect = 4.010e-46
Identity = 80/101 (79.21%), Postives = 89/101 (88.12%), Query Frame = 1
Query:    1 QVGATAYLESYVDDTDVIDDSHAELLIVVLWTAITIGRLAGLQDQRHLTLPRLYRHSTILFLCGAAAAAAILVFQSSAFVLWTGIAAYGLFNGPTVGYCYD 303
            +VGA  YL+ YVD+T+VI +SHAELL+VVLW AI IGRLAG+QDQRHLTL RLYRHSTILFL G  AA AILVFQ+SAFVLWTGIAAYGL +GPTVGYCYD
Sbjct:  231 EVGAAGYLKRYVDETEVIGESHAELLVVVLWMAIIIGRLAGIQDQRHLTLSRLYRHSTILFLGGTTAATAILVFQNSAFVLWTGIAAYGLCDGPTVGYCYD 331          
BLAST of mRNA_Ecto-sp13_S_contig6007.16611.1 vs. uniprot
Match: A0A835ZG03_9STRA (Major facilitator superfamily domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZG03_9STRA)

HSP 1 Score: 115 bits (288), Expect = 1.970e-28
Identity = 60/101 (59.41%), Postives = 73/101 (72.28%), Query Frame = 1
Query:    1 QVGATAYLESYVDDTDVIDDSHAELLIVVLWTAITIGRLAGLQDQRHLTLPRLYRHSTILFLCGAAAAAAILVFQSSAFVLWTGIAAYGLFNGPTVGYCYD 303
            +VGATAYL  YV+DT VI  + A LLIVVLW AIT+GR  G+  QR  T   LY  +T+L + GAAAAA  L+F SSA VLW  +A +GLFNGP++GYCYD
Sbjct:  239 KVGATAYLTQYVEDTGVIAPACASLLIVVLWAAITLGRCVGIHLQRDATPRALYAQTTLLCVAGAAAAALPLLFPSSAAVLWIAVALWGLFNGPSIGYCYD 339          
BLAST of mRNA_Ecto-sp13_S_contig6007.16611.1 vs. uniprot
Match: A0A7S2UZ78_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZ78_9STRA)

HSP 1 Score: 115 bits (287), Expect = 5.290e-28
Identity = 55/101 (54.46%), Postives = 66/101 (65.35%), Query Frame = 1
Query:    1 QVGATAYLESYVDDTDVIDDSHAELLIVVLWTAITIGRLAGLQDQRHLTLPRLYRHSTILFLCGAAAAAAILVFQSSAFVLWTGIAAYGLFNGPTVGYCYD 303
            +V ATAY   ++ DT ++      LLI+VLW AIT GR+AG+QDQR L  PRLY H  +  L GA A   +L F SS  VLW G+  YG FNGPTVGYCYD
Sbjct:  276 KVTATAYFTEFIQDTRILPFEDCALLIMVLWVAITFGRIAGIQDQRFLNRPRLYNHLCLFCLAGAIAMLLLLAFPSSRLVLWVGVGLYGFFNGPTVGYCYD 376          
BLAST of mRNA_Ecto-sp13_S_contig6007.16611.1 vs. uniprot
Match: A0A836CPE2_9STRA (Major facilitator superfamily domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPE2_9STRA)

HSP 1 Score: 113 bits (282), Expect = 1.790e-27
Identity = 58/101 (57.43%), Postives = 70/101 (69.31%), Query Frame = 1
Query:    1 QVGATAYLESYVDDTDVIDDSHAELLIVVLWTAITIGRLAGLQDQRHLTLPRLYRHSTILFLCGAAAAAAILVFQSSAFVLWTGIAAYGLFNGPTVGYCYD 303
            +VGATAYL  YV DT +I D+ A LLI VLW AIT+GR+ G+Q QR +TL +L++    LF+ GAAAAA  LV   SA  LW  +A YG  NGP VGYCYD
Sbjct:  271 KVGATAYLTQYVADTGIIPDARAPLLIAVLWLAITVGRILGIQAQRTITLSKLHKQCAGLFIGGAAAAALPLVLLHSAAALWIAVALYGTLNGPCVGYCYD 371          
BLAST of mRNA_Ecto-sp13_S_contig6007.16611.1 vs. uniprot
Match: A0A7S3UYE2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UYE2_HETAK)

HSP 1 Score: 103 bits (256), Expect = 8.680e-25
Identity = 51/101 (50.50%), Postives = 64/101 (63.37%), Query Frame = 1
Query:    1 QVGATAYLESYVDDTDVIDDSHAELLIVVLWTAITIGRLAGLQDQRHLTLPRLYRHSTILFLCGAAAAAAILVFQSSAFVLWTGIAAYGLFNGPTVGYCYD 303
            +V +TAY   +V++TD+I    A LLI VLWTAIT+GR+AG+QD R L L +LY H  I  + G      I +F S    LW G+  YG FNGPTVGY YD
Sbjct:   76 KVTSTAYFTEFVEETDLIPYDDATLLICVLWTAITLGRVAGIQDMRFLDLSKLYNHLLIFLVGGIIGMGMIALFPSLPLALWVGVGLYGFFNGPTVGYIYD 176          
BLAST of mRNA_Ecto-sp13_S_contig6007.16611.1 vs. uniprot
Match: A0A7S3UWT4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UWT4_HETAK)

HSP 1 Score: 103 bits (256), Expect = 1.110e-23
Identity = 51/101 (50.50%), Postives = 64/101 (63.37%), Query Frame = 1
Query:    1 QVGATAYLESYVDDTDVIDDSHAELLIVVLWTAITIGRLAGLQDQRHLTLPRLYRHSTILFLCGAAAAAAILVFQSSAFVLWTGIAAYGLFNGPTVGYCYD 303
            +V +TAY   +V++TD+I    A LLI VLWTAIT+GR+AG+QD R L L +LY H  I  + G      I +F S    LW G+  YG FNGPTVGY YD
Sbjct:  289 KVTSTAYFTEFVEETDLIPYDDATLLICVLWTAITLGRVAGIQDMRFLDLSKLYNHLLIFLVGGIIGMGMIALFPSLPLALWVGVGLYGFFNGPTVGYIYD 389          
BLAST of mRNA_Ecto-sp13_S_contig6007.16611.1 vs. uniprot
Match: D8LF80_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LF80_ECTSI)

HSP 1 Score: 99.4 bits (246), Expect = 1.780e-22
Identity = 52/101 (51.49%), Postives = 67/101 (66.34%), Query Frame = 1
Query:    1 QVGATAYLESYVDDTDVIDDSHAELLIVVLWTAITIGRLAGLQDQRHLTLPRLYRHSTILFLCGAAAAAAILVFQSSAFVLWTGIAAYGLFNGPTVGYCYD 303
            ++ ATA+L  + D+T   D S   LLIV LW AIT+GR+ GL+DQ  LTL RLYRH+ +L L GA A   +LV   S  +LW  + A+GLFNGP +GY YD
Sbjct:  273 RIAATAFLRQFADNTS--DASRRTLLIVCLWLAITLGRVLGLRDQLTLTLARLYRHAAVLCLGGAGAMFVLLVSSRSTAMLWVTVLAFGLFNGPVLGYGYD 371          
BLAST of mRNA_Ecto-sp13_S_contig6007.16611.1 vs. uniprot
Match: A0A7S3ZN68_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZN68_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 8.710e-19
Identity = 47/104 (45.19%), Postives = 60/104 (57.69%), Query Frame = 1
Query:    1 QVGATAYLESYVDDTDVIDDSHAELLIVVLWTAITIGRLAGLQDQRHLTLP---RLYRHSTILFLCGAAAAAAILVFQSSAFVLWTGIAAYGLFNGPTVGYCYD 303
            +V  T+Y+ +YV  T V+  S A L ++VLW AIT+GRL GLQDQ +L       ++ H     L G     A  VF    +  WTG+A YGL NGP VGYCYD
Sbjct:  256 KVDCTSYISTYVRQTGVVAASKASLSVLVLWIAITVGRLVGLQDQINLKKQPTRAIFAHLAAWLLTGTVGMFATAVFPGQPWAFWTGVALYGLGNGPCVGYCYD 359          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6007.16611.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D7FZ10_ECTSI2.770e-5997.03Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7G4N2_ECTSI4.010e-4679.21Similar to sodium-dependent glucose transporter 1 ... [more]
A0A835ZG03_9STRA1.970e-2859.41Major facilitator superfamily domain-containing pr... [more]
A0A7S2UZ78_9STRA5.290e-2854.46Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A836CPE2_9STRA1.790e-2757.43Major facilitator superfamily domain-containing pr... [more]
A0A7S3UYE2_HETAK8.680e-2550.50Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3UWT4_HETAK1.110e-2350.50Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
D8LF80_ECTSI1.780e-2251.49Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S3ZN68_9STRA8.710e-1945.19Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6007contigEcto-sp13_S_contig6007:7775..8077 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size303
Hectar predicted targeting categoryother localisation
Exons1
Cds size303
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463836.7016122-CDS-Ecto-sp13_S_contig6007:7774..80771681463836.7016122-CDS-Ecto-sp13_S_contig6007:7774..8077Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6007 7775..8077 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6007.16611.1prot_Ecto-sp13_S_contig6007.16611.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6007 7775..8077 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6007.16611.1

>prot_Ecto-sp13_S_contig6007.16611.1 ID=prot_Ecto-sp13_S_contig6007.16611.1|Name=mRNA_Ecto-sp13_S_contig6007.16611.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=101bp
QVGATAYLESYVDDTDVIDDSHAELLIVVLWTAITIGRLAGLQDQRHLTL
PRLYRHSTILFLCGAAAAAAILVFQSSAFVLWTGIAAYGLFNGPTVGYCY
D
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mRNA from alignment at Ecto-sp13_S_contig6007:7775..8077-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6007.16611.1 ID=mRNA_Ecto-sp13_S_contig6007.16611.1|Name=mRNA_Ecto-sp13_S_contig6007.16611.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=303bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6007:7775..8077- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTGGGCGCAACCGCGTACCTGGAGAGCTACGTCGACGATACCGACGT CATCGACGACTCGCACGCGGAGCTCCTCATCGTTGTGCTGTGGACGGCCA TTACCATCGGACGTCTCGCAGGTCTGCAGGACCAGCGACACCTCACCCTC CCGCGCCTGTACCGGCACTCCACCATCCTGTTCCTGTGCGGTGCGGCGGC GGCGGCGGCAATCCTGGTGTTCCAGAGCTCGGCGTTTGTCCTGTGGACCG GGATCGCGGCATACGGGCTCTTCAACGGGCCGACCGTGGGCTACTGCTAC GAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6007:7775..8077-

>mRNA_Ecto-sp13_S_contig6007.16611.1 ID=mRNA_Ecto-sp13_S_contig6007.16611.1|Name=mRNA_Ecto-sp13_S_contig6007.16611.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=303bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6007:7775..8077- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTGGGCGCAACCGCGTACCTGGAGAGCTACGTCGACGATACCGACGT
CATCGACGACTCGCACGCGGAGCTCCTCATCGTTGTGCTGTGGACGGCCA
TTACCATCGGACGTCTCGCAGGTCTGCAGGACCAGCGACACCTCACCCTC
CCGCGCCTGTACCGGCACTCCACCATCCTGTTCCTGTGCGGTGCGGCGGC
GGCGGCGGCAATCCTGGTGTTCCAGAGCTCGGCGTTTGTCCTGTGGACCG
GGATCGCGGCATACGGGCTCTTCAACGGGCCGACCGTGGGCTACTGCTAC
GAC
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