mRNA_Ecto-sp13_S_contig6004.16601.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6004.16601.1
Unique NamemRNA_Ecto-sp13_S_contig6004.16601.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6004.16601.1 vs. uniprot
Match: D7FI13_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI13_ECTSI)

HSP 1 Score: 217 bits (552), Expect = 4.910e-66
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 1 
Query:    1 MLGCEDALVHLLNFVWPNIFETSPHVINAVFEAIEGMSVALGVTRILQYVLQGLFHPARRVREVYWKLYNSLYILGADALTPAYPRLTDDGNNAYRRTHLELFV 312
            MLGCEDALVHLLNFVWPNIFETSPHVINAVFEAIEGMSVALGVTRILQYVLQGLFHPARRVREVYWKLYNSLYILGADALTPAYPRLTDDGNNAYRRTHLELFV
Sbjct:  456 MLGCEDALVHLLNFVWPNIFETSPHVINAVFEAIEGMSVALGVTRILQYVLQGLFHPARRVREVYWKLYNSLYILGADALTPAYPRLTDDGNNAYRRTHLELFV 559
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BLAST of mRNA_Ecto-sp13_S_contig6004.16601.1 vs. uniprot
Match: A0A6H5JJ74_9PHAE (TOG domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ74_9PHAE)

HSP 1 Score: 215 bits (548), Expect = 8.650e-63
Identity = 103/104 (99.04%), Postives = 103/104 (99.04%), Query Frame = 1 
Query:    1 MLGCEDALVHLLNFVWPNIFETSPHVINAVFEAIEGMSVALGVTRILQYVLQGLFHPARRVREVYWKLYNSLYILGADALTPAYPRLTDDGNNAYRRTHLELFV 312
            MLGCEDALVHLLNFVWPNIFETSPHVINAVFEAIEGMSVALGVTRILQYVLQGLFHPARRVREVYWKLYNSLYILGADALTPAYPRLTDDGNN YRRTHLELFV
Sbjct: 1273 MLGCEDALVHLLNFVWPNIFETSPHVINAVFEAIEGMSVALGVTRILQYVLQGLFHPARRVREVYWKLYNSLYILGADALTPAYPRLTDDGNNTYRRTHLELFV 1376
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BLAST of mRNA_Ecto-sp13_S_contig6004.16601.1 vs. uniprot
Match: A0A7S2XY64_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XY64_9STRA)

HSP 1 Score: 186 bits (471), Expect = 4.030e-56
Identity = 84/103 (81.55%), Postives = 93/103 (90.29%), Query Frame = 1 
Query:    4 LGCEDALVHLLNFVWPNIFETSPHVINAVFEAIEGMSVALGVTRILQYVLQGLFHPARRVREVYWKLYNSLYILGADALTPAYPRLTDDGNNAYRRTHLELFV 312
            LGCEDAL HLLNFVWPNIFE SPHVINAV EA+EG  VALG T+ILQYV+QGL+HPARRVR+VYWK+YN+LY+ GADALTPAYPRL DDG N YRRTHLELF+
Sbjct:  242 LGCEDALTHLLNFVWPNIFENSPHVINAVMEAVEGCMVALGPTKILQYVMQGLYHPARRVRDVYWKIYNTLYMFGADALTPAYPRLEDDGLNTYRRTHLELFI 344
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BLAST of mRNA_Ecto-sp13_S_contig6004.16601.1 vs. uniprot
Match: A0A2P4YHC9_9STRA (Splicing factor 3B subunit 1 n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YHC9_9STRA)

HSP 1 Score: 176 bits (445), Expect = 2.330e-54
Identity = 83/103 (80.58%), Postives = 89/103 (86.41%), Query Frame = 1 
Query:    4 LGCEDALVHLLNFVWPNIFETSPHVINAVFEAIEGMSVALGVTRILQYVLQGLFHPARRVREVYWKLYNSLYILGADALTPAYPRLTDDGNNAYRRTHLELFV 312
            LGCEDALVHLLNFVWPNIFETSPHVINAVFEA+EG  VALG   ILQYVLQGLFHPARRVREVYWK+YNSLY+   D LTPAYP L DDG N+Y RT+LEL +
Sbjct:   70 LGCEDALVHLLNFVWPNIFETSPHVINAVFEAVEGCRVALGPHVILQYVLQGLFHPARRVREVYWKIYNSLYMYAQDGLTPAYPALDDDGVNSYNRTYLELCI 172
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BLAST of mRNA_Ecto-sp13_S_contig6004.16601.1 vs. uniprot
Match: A0A6V1S7R5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1S7R5_HETAK)

HSP 1 Score: 184 bits (467), Expect = 4.620e-52
Identity = 84/103 (81.55%), Postives = 93/103 (90.29%), Query Frame = 1 
Query:    4 LGCEDALVHLLNFVWPNIFETSPHVINAVFEAIEGMSVALGVTRILQYVLQGLFHPARRVREVYWKLYNSLYILGADALTPAYPRLTDDGNNAYRRTHLELFV 312
            LGCEDAL HLLN+VWPNIFE SPH+INA FEAI G +VALG TR+LQYVLQG++HPARRVR+VYWK+YNSLYI GADALTPAYPRL D+G N YRRTHLELFV
Sbjct:  793 LGCEDALTHLLNYVWPNIFEVSPHMINACFEAIGGCAVALGPTRVLQYVLQGMYHPARRVRDVYWKIYNSLYIYGADALTPAYPRLEDEGANTYRRTHLELFV 895
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BLAST of mRNA_Ecto-sp13_S_contig6004.16601.1 vs. uniprot
Match: A0A1Z9QC94_9BACT (TOG domain-containing protein n=1 Tax=Phycisphaeraceae bacterium TMED231 TaxID=1986831 RepID=A0A1Z9QC94_9BACT)

HSP 1 Score: 183 bits (464), Expect = 1.800e-51
Identity = 87/103 (84.47%), Postives = 93/103 (90.29%), Query Frame = 1 
Query:    4 LGCEDALVHLLNFVWPNIFETSPHVINAVFEAIEGMSVALGVTRILQYVLQGLFHPARRVREVYWKLYNSLYILGADALTPAYPRLTDDGNNAYRRTHLELFV 312
            LGCEDA+ HLLNFVWPNIFETSPHVI AVFEAIEGM VALG  +ILQYVLQGL+HPARRVR+VYWKLYN++YI GADALT AYPRL DDG N YRRTHLELFV
Sbjct: 1171 LGCEDAVSHLLNFVWPNIFETSPHVIAAVFEAIEGMIVALGPIKILQYVLQGLYHPARRVRDVYWKLYNTIYIYGADALTCAYPRLEDDGVNTYRRTHLELFV 1273
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BLAST of mRNA_Ecto-sp13_S_contig6004.16601.1 vs. uniprot
Match: A0A7S3GVU2_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GVU2_9STRA)

HSP 1 Score: 175 bits (443), Expect = 8.310e-51
Identity = 79/103 (76.70%), Postives = 89/103 (86.41%), Query Frame = 1 
Query:    4 LGCEDALVHLLNFVWPNIFETSPHVINAVFEAIEGMSVALGVTRILQYVLQGLFHPARRVREVYWKLYNSLYILGADALTPAYPRLTDDGNNAYRRTHLELFV 312
            LGCEDAL+HLLNFVWPN+FE S HVINA  EA+E M VALG  ++ QYV+QGLFHPAR+VREVYWK+YNS+YI G DALTPAYPRL DDG N YRRTHLELF+
Sbjct:  354 LGCEDALLHLLNFVWPNLFEESAHVINACMEAVEAMIVALGPAKLFQYVMQGLFHPARKVREVYWKIYNSMYIYGQDALTPAYPRLEDDGVNNYRRTHLELFI 456
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BLAST of mRNA_Ecto-sp13_S_contig6004.16601.1 vs. uniprot
Match: A0A5D6XVH6_9STRA (SF3b1 domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XVH6_9STRA)

HSP 1 Score: 179 bits (453), Expect = 5.460e-50
Identity = 85/101 (84.16%), Postives = 90/101 (89.11%), Query Frame = 1 
Query:    4 LGCEDALVHLLNFVWPNIFETSPHVINAVFEAIEGMSVALGVTRILQYVLQGLFHPARRVREVYWKLYNSLYILGADALTPAYPRLTDDGNNAYRRTHLEL 306
            LGCEDALVHLLNFVWPNIFETSPHVINAVFEAIEG  VALG   +LQYVLQGLFHPARRVREVYWK+YNSLY+   DALTPAYP + DDG NAYRRT+LEL
Sbjct: 1168 LGCEDALVHLLNFVWPNIFETSPHVINAVFEAIEGCRVALGPHVVLQYVLQGLFHPARRVREVYWKIYNSLYMYAQDALTPAYPAIEDDGINAYRRTYLEL 1268
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BLAST of mRNA_Ecto-sp13_S_contig6004.16601.1 vs. uniprot
Match: A0A2G9IC96_9LAMI (Uncharacterized protein n=1 Tax=Handroanthus impetiginosus TaxID=429701 RepID=A0A2G9IC96_9LAMI)

HSP 1 Score: 162 bits (409), Expect = 1.760e-49
Identity = 78/104 (75.00%), Postives = 84/104 (80.77%), Query Frame = 1 
Query:    4 LGCEDALVHLLNFVWPNIFETSPHVINAVFEAIEGMSVALGVTRILQYVLQGLFHPARRVREVYWKLYNSLYILGADALTPAYPRLTDD-GNNAYRRTHLELFV 312
            LGCEDAL+HLLN+VWPNIFETSPHVINAV EAIEGM VALG   +L Y LQGLFHPAR+VREVYWK+YNSLYI   DAL  AYP L DD GNN Y R  L +FV
Sbjct:   25 LGCEDALIHLLNYVWPNIFETSPHVINAVMEAIEGMRVALGAAVVLNYCLQGLFHPARKVREVYWKIYNSLYIGSQDALVAAYPVLEDDEGNNVYGRPELHIFV 128
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BLAST of mRNA_Ecto-sp13_S_contig6004.16601.1 vs. uniprot
Match: A0A6A1VKK8_9ROSI (Splicing factor 3B subunit 1 n=1 Tax=Morella rubra TaxID=262757 RepID=A0A6A1VKK8_9ROSI)

HSP 1 Score: 161 bits (408), Expect = 9.580e-49
Identity = 77/103 (74.76%), Postives = 83/103 (80.58%), Query Frame = 1 
Query:    4 LGCEDALVHLLNFVWPNIFETSPHVINAVFEAIEGMSVALGVTRILQYVLQGLFHPARRVREVYWKLYNSLYILGADALTPAYPRLTDDGNNAYRRTHLELFV 312
            LGCEDALVHLLN+VWPNIFETSPHVINAV EAIEGM VALG   +L Y LQGLFHPAR+VREVYWK+YNSLYI   DAL  AYP L D+ NN Y R  L +FV
Sbjct:   69 LGCEDALVHLLNYVWPNIFETSPHVINAVMEAIEGMRVALGAAVVLNYCLQGLFHPARKVREVYWKIYNSLYIGSQDALVAAYPVLEDEHNNIYSRPELMMFV 171
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6004.16601.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FI13_ECTSI4.910e-66100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JJ74_9PHAE8.650e-6399.04TOG domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7S2XY64_9STRA4.030e-5681.55Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A2P4YHC9_9STRA2.330e-5480.58Splicing factor 3B subunit 1 n=1 Tax=Phytophthora ... [more]
A0A6V1S7R5_HETAK4.620e-5281.55Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A1Z9QC94_9BACT1.800e-5184.47TOG domain-containing protein n=1 Tax=Phycisphaera... [more]
A0A7S3GVU2_9STRA8.310e-5176.70Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A5D6XVH6_9STRA5.460e-5084.16SF3b1 domain-containing protein n=1 Tax=Pythium br... [more]
A0A2G9IC96_9LAMI1.760e-4975.00Uncharacterized protein n=1 Tax=Handroanthus impet... [more]
A0A6A1VKK8_9ROSI9.580e-4974.76Splicing factor 3B subunit 1 n=1 Tax=Morella rubra... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6004contigEcto-sp13_S_contig6004:1..891 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score218.4
Seed ortholog evalue1.6e-54
Seed eggNOG ortholog2880.D7FI13
Preferred nameSF3B1
Model size315
KEGG koko:K12828
KEGG Pathwayko03040,map03040
KEGG ModuleM00352
Hectar predicted targeting categoryother localisation
GOsGO:0000245,GO:0000375,GO:0000377,GO:0000398,GO:0000785,GO:0001701,GO:0001824,GO:0001825,GO:0003002,GO:0003674,GO:0003676,GO:0003682,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005686,GO:0005689,GO:0005694,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0007275,GO:0007389,GO:0008150,GO:0008152,GO:0008380,GO:0009653,GO:0009790,GO:0009792,GO:0009892,GO:0009893,GO:0009952,GO:0009987,GO:0010467,GO:0010468,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0016043,GO:0016070,GO:0016071,GO:0016363,GO:0016604,GO:0016607,GO:0019222,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0034399,GO:0034622,GO:0034641,GO:0034693,GO:0040029,GO:0043009,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045815,GO:0046483,GO:0048518,GO:0048519,GO:0048646,GO:0048856,GO:0050789,GO:0060255,GO:0065003,GO:0065007,GO:0070013,GO:0071004,GO:0071005,GO:0071010,GO:0071011,GO:0071013,GO:0071014,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:0097525,GO:0120114,GO:1901360,GO:1901363,GO:1902494,GO:1990904
Exons2
EggNOG free text desc.spliceosomal complex assembly
EggNOG OGsCOG5181@1,KOG0213@2759
Cds size315
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03036,ko03041
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463836.0234618-CDS-Ecto-sp13_S_contig6004:0..1051681463836.0234618-CDS-Ecto-sp13_S_contig6004:0..105Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6004 1..105 +
1681463836.0351605-CDS-Ecto-sp13_S_contig6004:681..8911681463836.0351605-CDS-Ecto-sp13_S_contig6004:681..891Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6004 682..891 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6004.16601.1prot_Ecto-sp13_S_contig6004.16601.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6004 1..891 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6004.16601.1

>prot_Ecto-sp13_S_contig6004.16601.1 ID=prot_Ecto-sp13_S_contig6004.16601.1|Name=mRNA_Ecto-sp13_S_contig6004.16601.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=105bp
MLGCEDALVHLLNFVWPNIFETSPHVINAVFEAIEGMSVALGVTRILQYV
LQGLFHPARRVREVYWKLYNSLYILGADALTPAYPRLTDDGNNAYRRTHL
ELFV*
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mRNA from alignment at Ecto-sp13_S_contig6004:1..891+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6004.16601.1 ID=mRNA_Ecto-sp13_S_contig6004.16601.1|Name=mRNA_Ecto-sp13_S_contig6004.16601.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=891bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6004:1..891+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTTGGCTGTGAGGACGCCCTGGTGCACCTGCTCAACTTCGTGTGGCC
CAACATCTTCGAGACCAGCCCCCACGTCATCAACGCGGTCTTCGAGGCGA
TCGAGGTATGAGACGTGATCAGAGTTTAATACGGTATAGGTACAGTAAGG
TATTTTGTCCTTTGCGCCATTGCTGAGCTTCCCTTTCTGTCTGGCTTCCC
CGTCTGTCTCTCTGTCTCGAGTATGTTCCTTTGGATGCTGTTGGAAGCAT
CGAAACGTTGCCACACTCCCTTGCAATTTTAATTGTAATTGTGATTGGGA
GTGTAGTGCTCTGAAACTTGTAGTTTGGCCTATTAATAGTGTACTGCCAG
CCTCTGGATTTTTTTGTCCCCGAACTTCTTGAGAATGAGTGTCTCGGCGA
TTTTTATTTTCGAAATTTTTTTCTTTTGTTCAATGTTGTATGTTTGTGTG
GACTGTGTCACCACCACGCCATTTCGCCTGTCGCCGGTTGGATGAAGTCG
TCCGGAAGGCGATGAGTTACTCGACGGAGACTTGCCGCTCAGTGGACGGT
GTTGAAGCCAATACAACAGCGAAAAAGGAAGTGCTTTGGGTATGATCTGC
TTGATCGTTTGTTACTTTGCGTACCCCCCCTTTCCTCCACGCTGATTTCT
TGTGTAACATGTGCCGCTTCATTTTTTGTAGGGGATGTCCGTCGCGCTGG
GGGTGACGCGGATTCTTCAGTACGTGCTGCAGGGCCTCTTCCACCCCGCG
CGCCGGGTGCGCGAGGTGTACTGGAAGCTGTACAACTCGCTCTACATCCT
GGGCGCCGACGCCCTTACCCCTGCCTACCCCCGCCTCACTGATGACGGCA
ACAATGCCTACCGACGCACCCACCTCGAGCTGTTCGTGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6004:1..891+

>mRNA_Ecto-sp13_S_contig6004.16601.1 ID=mRNA_Ecto-sp13_S_contig6004.16601.1|Name=mRNA_Ecto-sp13_S_contig6004.16601.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=315bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6004:1..891+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTTGGCTGTGAGGACGCCCTGGTGCACCTGCTCAACTTCGTGTGGCC
CAACATCTTCGAGACCAGCCCCCACGTCATCAACGCGGTCTTCGAGGCGA
TCGAGGGGATGTCCGTCGCGCTGGGGGTGACGCGGATTCTTCAGTACGTG
CTGCAGGGCCTCTTCCACCCCGCGCGCCGGGTGCGCGAGGTGTACTGGAA
GCTGTACAACTCGCTCTACATCCTGGGCGCCGACGCCCTTACCCCTGCCT
ACCCCCGCCTCACTGATGACGGCAACAATGCCTACCGACGCACCCACCTC
GAGCTGTTCGTGTGA
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