mRNA_Ecto-sp13_S_contig60030.16600.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig60030.16600.1
Unique NamemRNA_Ecto-sp13_S_contig60030.16600.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig60030.16600.1 vs. uniprot
Match: D8LKD6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKD6_ECTSI)

HSP 1 Score: 168 bits (426), Expect = 7.270e-47
Identity = 88/145 (60.69%), Postives = 104/145 (71.72%), Query Frame = 1 
Query:    1 AHKTGDFACYGRPSGTRRAQRGAAS-VSFKLPRQQVLEDIGIVVSTKHPETTTFLSQAMADNLLTRFTVDRDSVLVTAFDENPIAPLVLGNRRTLCALVADMSKKDDVDKAVDAACTEAMRHGWFAELSKANVIINGSTLPSFVP 432
            AHKT DFAC+G P G RRA RGAAS  SFK PRQ   E +G VVS KHP T TFLS + AD+L+ RFTV  D VLVT F+ENP+A LVLG  R L ALVAD +K ++ +  V+ AC  A +HGWFAEL+K  VI+ GSTLPS +P
Sbjct:  175 AHKTNDFACHGHPLGKRRAARGAASSASFKSPRQASFEAVGFVVSDKHPSTATFLSTSTADHLINRFTVPGDCVLVTTFEENPLASLVLGQGRHLGALVADSTKAENAEVEVNEACVTATKHGWFAELNKTEVIMTGSTLPSCIP 319
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BLAST of mRNA_Ecto-sp13_S_contig60030.16600.1 vs. uniprot
Match: A0A6H5JZ11_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ11_9PHAE)

HSP 1 Score: 142 bits (358), Expect = 4.600e-40
Identity = 71/79 (89.87%), Postives = 73/79 (92.41%), Query Frame = 1 
Query:  196 FTVDRDSVLVTAFDENPIAPLVLGNRRTLCALVADMSKKDDVDKAVDAACTEAMRHGWFAELSKANVIINGSTLPSFVP 432
            F V  DSVLVTAFDENPIAPLVLGN RTLCALVADMSKKDDVDKAVDAACT+AMRHGWFAEL KANVII+GSTLPS VP
Sbjct:    6 FAVAGDSVLVTAFDENPIAPLVLGNGRTLCALVADMSKKDDVDKAVDAACTDAMRHGWFAELCKANVIISGSTLPSIVP 84
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BLAST of mRNA_Ecto-sp13_S_contig60030.16600.1 vs. uniprot
Match: A0A6H5JRF7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRF7_9PHAE)

HSP 1 Score: 147 bits (372), Expect = 6.220e-39
Identity = 82/145 (56.55%), Postives = 96/145 (66.21%), Query Frame = 1 
Query:    1 AHKTGDFACYGRPSGTRRAQRGAASVS-FKLPRQQVLEDIGIVVSTKHPETTTFLSQAMADNLLTRFTVDRDSVLVTAFDENPIAPLVLGNRRTLCALVADMSKKDDVDKAVDAACTEAMRHGWFAELSKANVIINGSTLPSFVP 432
            AHK  DFACYG P+G RRA  GAAS S FK PRQ   E    VVS KHP T T+LS +MAD+L+ RFTV  DSV+VT F+EN IAP VL   R L ALV D +K    D  VD AC  A + GWFA+L+KA V +  +TLP+ VP
Sbjct:  268 AHKGQDFACYGHPAGNRRA--GAASPSSFKSPRQAAFEQASFVVSAKHPTTATYLSHSMADHLINRFTVPGDSVVVTTFEENLIAPFVLWQGRLLSALVVDPAKATHADTEVDEACVAATKRGWFADLNKAKVRVFATTLPACVP 410
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BLAST of mRNA_Ecto-sp13_S_contig60030.16600.1 vs. uniprot
Match: A0A6H5LCY2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LCY2_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 2.990e-22
Identity = 62/144 (43.06%), Postives = 82/144 (56.94%), Query Frame = 1 
Query:    1 AHKTGDFACYGRPSGTRRAQRGAASVSFKLPRQQVLEDIGIVVSTKHPETTTFLSQAMADNLLTRFTVDRDSVLVTAFDENPIAPLVLGNRRTLCALVADMSKKDDVDKAVDAACTEAMRHGWFAELSKANVIINGSTLPSFVP 432
            AHKTG+   +            A+   F  PR   LE +GI++S KHP  T FL+ +MAD+LL RFT   D VLV+AF++N +A LVL + R L ALV D +K   V + V +A   AM  GWF  L+ A V + GS LP+  P
Sbjct:  654 AHKTGEHTSH------------ASGPQFDPPRISQLEAVGIIISQKHPSAT-FLAPSMADHLLNRFTSAGDKVLVSAFEDNNLASLVLTSGRRLFALVGDPAKAVSVGRQVKSALATAMTAGWFKALANAGVPLGGSVLPAGFP 784
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig60030.16600.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LKD6_ECTSI7.270e-4760.69Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JZ11_9PHAE4.600e-4089.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRF7_9PHAE6.220e-3956.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LCY2_9PHAE2.990e-2243.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig60030contigEcto-sp13_S_contig60030:224..834 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size432
Hectar predicted targeting categoryother localisation
Exons2
Cds size432
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463835.875852-CDS-Ecto-sp13_S_contig60030:223..4611681463835.875852-CDS-Ecto-sp13_S_contig60030:223..461Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig60030 224..461 -
1681463835.8857512-CDS-Ecto-sp13_S_contig60030:640..8341681463835.8857512-CDS-Ecto-sp13_S_contig60030:640..834Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig60030 641..834 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig60030.16600.1prot_Ecto-sp13_S_contig60030.16600.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig60030 224..834 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig60030.16600.1

>prot_Ecto-sp13_S_contig60030.16600.1 ID=prot_Ecto-sp13_S_contig60030.16600.1|Name=mRNA_Ecto-sp13_S_contig60030.16600.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=144bp
AHKTGDFACYGRPSGTRRAQRGAASVSFKLPRQQVLEDIGIVVSTKHPET
TTFLSQAMADNLLTRFTVDRDSVLVTAFDENPIAPLVLGNRRTLCALVAD
MSKKDDVDKAVDAACTEAMRHGWFAELSKANVIINGSTLPSFVP
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mRNA from alignment at Ecto-sp13_S_contig60030:224..834-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig60030.16600.1 ID=mRNA_Ecto-sp13_S_contig60030.16600.1|Name=mRNA_Ecto-sp13_S_contig60030.16600.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=611bp|location=Sequence derived from alignment at Ecto-sp13_S_contig60030:224..834- (Ectocarpus species13 EcNAP12_S_4_19m)
GCGCACAAGACCGGAGATTTTGCTTGCTACGGCCGCCCGTCGGGCACCCG
TCGCGCGCAGCGTGGAGCCGCGTCGGTATCTTTCAAGCTTCCTCGGCAGC
AGGTTTTGGAGGACATCGGTATTGTCGTTTCCACCAAACACCCCGAGACA
ACGACGTTCCTGTCGCAAGCCATGGCCGATAACCTCCTGACGAGGTTAGT
TTCGTTGACAACAGCACCCACACTTGTTGTTCTGTTATCCGGTCGCTACT
GGATTGTAGTGGGCTTATTAGCATACGAGTCGATTCTGCTGGTAATCCTA
GAGTTTTCGTCCCGCAAAGACAAGTTCGCTTTATAACGGCGTCGCCCCGT
TCGCATACTCGTTGCCTTTCCAGGTTCACCGTTGACAGAGACAGTGTGCT
GGTTACGGCATTCGATGAAAACCCCATCGCGCCTCTGGTGCTAGGCAATA
GGAGGACGCTTTGTGCTTTGGTGGCGGACATGTCGAAGAAGGACGACGTC
GACAAGGCCGTAGACGCGGCGTGCACAGAAGCCATGAGGCATGGGTGGTT
TGCGGAGCTTAGCAAGGCGAACGTGATCATAAATGGATCAACCCTACCGT
CTTTTGTTCCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig60030:224..834-

>mRNA_Ecto-sp13_S_contig60030.16600.1 ID=mRNA_Ecto-sp13_S_contig60030.16600.1|Name=mRNA_Ecto-sp13_S_contig60030.16600.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=432bp|location=Sequence derived from alignment at Ecto-sp13_S_contig60030:224..834- (Ectocarpus species13 EcNAP12_S_4_19m)
GCGCACAAGACCGGAGATTTTGCTTGCTACGGCCGCCCGTCGGGCACCCG
TCGCGCGCAGCGTGGAGCCGCGTCGGTATCTTTCAAGCTTCCTCGGCAGC
AGGTTTTGGAGGACATCGGTATTGTCGTTTCCACCAAACACCCCGAGACA
ACGACGTTCCTGTCGCAAGCCATGGCCGATAACCTCCTGACGAGGTTCAC
CGTTGACAGAGACAGTGTGCTGGTTACGGCATTCGATGAAAACCCCATCG
CGCCTCTGGTGCTAGGCAATAGGAGGACGCTTTGTGCTTTGGTGGCGGAC
ATGTCGAAGAAGGACGACGTCGACAAGGCCGTAGACGCGGCGTGCACAGA
AGCCATGAGGCATGGGTGGTTTGCGGAGCTTAGCAAGGCGAACGTGATCA
TAAATGGATCAACCCTACCGTCTTTTGTTCCG
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