mRNA_Ecto-sp13_S_contig5981.16555.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5981.16555.1
Unique NamemRNA_Ecto-sp13_S_contig5981.16555.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig5981.16555.1 vs. uniprot
Match: D7G2I1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2I1_ECTSI)

HSP 1 Score: 206 bits (524), Expect = 4.560e-62
Identity = 107/144 (74.31%), Postives = 118/144 (81.94%), Query Frame = 1
Query:    1 LGVCNNSDGVIHSIELDHREEHLVRSNPGYSVVTLRYPPVRVLVYIKSADEAGLQLDGLPRGVVAFAPVEKPFSIVGIGKRKFTIRRRQLPLTAGCLSSVYRSQGQTMRTIILDIRNPPGNRMDPAAVYVALSRATCLEDLYLL 432
            LGVCNNSDG+I  IELD RE +   S  GYSVVTLRY P+R+ VYIKSAD AGL LDGL RGV+A APVE+ F+IVGI KRKFT +RRQ+PLTAGCLSSVYRSQGQTM  IILDIR PPG+ +D AAVYVALSRAT L DL LL
Sbjct:  148 LGVCNNSDGIIRGIELDPREGY-ASSTAGYSVVTLRYAPLRIFVYIKSADAAGLHLDGLQRGVIAVAPVERKFTIVGINKRKFTFKRRQIPLTAGCLSSVYRSQGQTMPKIILDIRRPPGHAVDCAAVYVALSRATGLGDLNLL 290          
BLAST of mRNA_Ecto-sp13_S_contig5981.16555.1 vs. uniprot
Match: D7G3U9_ECTSI (ATP-dependent DNA helicase n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3U9_ECTSI)

HSP 1 Score: 206 bits (524), Expect = 7.480e-59
Identity = 107/144 (74.31%), Postives = 118/144 (81.94%), Query Frame = 1
Query:    1 LGVCNNSDGVIHSIELDHREEHLVRSNPGYSVVTLRYPPVRVLVYIKSADEAGLQLDGLPRGVVAFAPVEKPFSIVGIGKRKFTIRRRQLPLTAGCLSSVYRSQGQTMRTIILDIRNPPGNRMDPAAVYVALSRATCLEDLYLL 432
            LGVCNNSDG+I  IELD RE +   S  GYSVVTLRY P+R+ VYIKSAD AGL LDGL RGV+A APVE+ F+IVGI KRKFT +RRQ+PLTAGCLSSVYRSQGQTM  IILDIR PPG+ +D AAVYVALSRAT L DL LL
Sbjct: 1855 LGVCNNSDGIIRGIELDPREGY-ASSTAGYSVVTLRYAPLRIFVYIKSADAAGLHLDGLQRGVIAVAPVERKFTIVGINKRKFTFKRRQIPLTAGCLSSVYRSQGQTMPKIILDIRRPPGHAVDCAAVYVALSRATGLGDLNLL 1997          
BLAST of mRNA_Ecto-sp13_S_contig5981.16555.1 vs. uniprot
Match: A0A6H5KXW4_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXW4_9PHAE)

HSP 1 Score: 169 bits (427), Expect = 4.480e-46
Identity = 84/123 (68.29%), Postives = 96/123 (78.05%), Query Frame = 1
Query:    1 LGVCNNSDGVIHSIELDHREEHLVRSNPGYSVVTLRYPPVRVLVYIKSADEAGLQLDGLPRGVVAFAPVEKPFSIVGIGKRKFTIRRRQLPLTAGCLSSVYRSQGQTMRTIILDIRNPPGNRM 369
            LGVCNNSDG+I  IELD  E+ L+   PGYSVV LRY P++V VYIK+AD+AGL L+GL RGVVA APVEK  +I GIGK KF  +RRQLPL AGC+SSV+RSQGQTM  IILDI  PPG  M
Sbjct:  627 LGVCNNSDGIIRGIELDPLEDFLLDPTPGYSVVNLRYAPLQVFVYIKTADDAGLHLEGLDRGVVAIAPVEKECTIEGIGKGKFIFKRRQLPLPAGCVSSVFRSQGQTMPKIILDIHPPPGTAM 749          
BLAST of mRNA_Ecto-sp13_S_contig5981.16555.1 vs. uniprot
Match: A0A6H5K882_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K882_9PHAE)

HSP 1 Score: 154 bits (390), Expect = 8.120e-41
Identity = 79/144 (54.86%), Postives = 103/144 (71.53%), Query Frame = 1
Query:    1 LGVCNNSDGVIHSIELDHREEHLVRSNPGYSVVTLRYPPVRVLVYIKSADEAGLQLDGLPRGVVAFAPVEKPFSIVGIGKRKFTIRRRQLPLTAGCLSSVYRSQGQTMRTIILDIRNPPGNRMDPAAVYVALSRATCLEDLYLL 432
            LGVC+N DG++ +IELD RE+ +   + GY VV L++ PVRV V+I+S D++GL+L G PRGVVAF P+E+   + G   R FTI+RRQLPLT+GCLSSV          +ILD+R PPG R+DPA++YVA SRA  L D YLL
Sbjct: 1342 LGVCSNRDGIVRAIELDQREQ-IQNHDGGYRVVHLKHLPVRVFVHIESMDDSGLKLPGFPRGVVAFGPIERNVVLTGKNGRNFTIKRRQLPLTSGCLSSVR---------VILDLRKPPGPRVDPASLYVARSRAKSLNDTYLL 1475          
BLAST of mRNA_Ecto-sp13_S_contig5981.16555.1 vs. uniprot
Match: A0A6H5L437_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L437_9PHAE)

HSP 1 Score: 139 bits (350), Expect = 1.490e-39
Identity = 68/101 (67.33%), Postives = 82/101 (81.19%), Query Frame = 1
Query:    1 LGVCNNSDGVIHSIELDHREEHLVRSNPGYSVVTLRYPPVRVLVYIKSADEAGLQLDGLPRGVVAFAPVEKPFSIVGIGKRKFTIRRRQLPLTAGCLSSVY 303
            LGVCNNSDG++ +IEL  RE+ +   N GY VV L+YPPVRV V+I+SAD+AGL+L GLPRGVVAF PVE+ F + G   RKFTI+RRQLPLT+GCLSSVY
Sbjct:   51 LGVCNNSDGIVRAIELYQREQ-VQNHNDGYRVVHLKYPPVRVFVHIESADDAGLKLPGLPRGVVAFGPVERNFVLTGNNGRKFTIKRRQLPLTSGCLSSVY 150          
BLAST of mRNA_Ecto-sp13_S_contig5981.16555.1 vs. uniprot
Match: A0A6H5KIB1_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIB1_9PHAE)

HSP 1 Score: 140 bits (352), Expect = 1.080e-35
Identity = 68/109 (62.39%), Postives = 84/109 (77.06%), Query Frame = 1
Query:    1 LGVCNNSDGVIHSIELDHREEHLVRSNPGYSVVTLRYPPVRVLVYIKSADEAGLQLDGLPRGVVAFAPVEKPFSIVGIGKRKFTIRRRQLPLTAGCLSSVYRSQGQTMR 327
            LGVCNNSDG+I  IELD RE+ L+   PGYSVV LRY P+RV VYIK+AD+AGL L+GL RGVVA APVEK F+I GIGKRKF  +RRQLP   G ++ ++R   +T++
Sbjct: 2093 LGVCNNSDGIIRGIELDPREDFLLDPTPGYSVVNLRYAPLRVFVYIKTADDAGLHLEGLDRGVVAIAPVEKEFTIEGIGKRKFIFKRRQLPDILGIINYLHRLGKETLK 2201          
BLAST of mRNA_Ecto-sp13_S_contig5981.16555.1 vs. uniprot
Match: A0A6H5JCW5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCW5_9PHAE)

HSP 1 Score: 129 bits (325), Expect = 1.200e-34
Identity = 71/101 (70.30%), Postives = 76/101 (75.25%), Query Frame = 1
Query:    1 LGVCNNSDGVIHSIELDHREEHLVRSNPGYSVVTLRYPPVRVLVYIKSADEAGLQLDGLPRGVVAFAPVEKPFSIVGIGKRKFTIRRRQLPLTAGCLSSVY 303
            LGVCNNSDGVI SIELD REE+ V SNPG+SVV LRY PVR              LDGLPRGVVAFAPVEKPFS+VG+GKRKFTI+RRQL  TAG   SVY
Sbjct:   64 LGVCNNSDGVIDSIELDQREEYHVHSNPGHSVVYLRYTPVR--------------LDGLPRGVVAFAPVEKPFSVVGVGKRKFTIQRRQLLPTAG---SVY 147          
BLAST of mRNA_Ecto-sp13_S_contig5981.16555.1 vs. uniprot
Match: A0A6H5JN07_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN07_9PHAE)

HSP 1 Score: 120 bits (302), Expect = 5.800e-29
Identity = 75/158 (47.47%), Postives = 94/158 (59.49%), Query Frame = 1
Query:    1 LGVCNNSDGVIHSIELDHREEHLVRSNPGYSVVTLRYPPVRVLVYIKSADEAGLQLDGLPRGVVAFAPVEKPFSIVGIG-KRKFTIRRRQLPLTAGCLSSV-------------YRSQGQTMRTIILDIRNPPGNRMDPAAVYVALSRATCLEDLYLL 432
            LGVCNNSDG+I  IE+  REE                    V VYI++A +AGL+L  L RGV +  PVE+ FSIV    KRKFT  R+Q+PLTAGCLS++               S   ++R IILD++ PP   +DPA+ Y+ALSRAT LEDLYLL
Sbjct: 1739 LGVCNNSDGIIRGIEITQREE--------------------VFVYIQTAYDAGLKLPDLCRGVTSVGPVERNFSIVITKTKRKFTFSRKQVPLTAGCLSALGSDYIASSCLYHPILSHCVSLRRIILDLQKPPQPLVDPASSYLALSRATYLEDLYLL 1876          
BLAST of mRNA_Ecto-sp13_S_contig5981.16555.1 vs. uniprot
Match: A0A6H5JT57_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT57_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 1.190e-22
Identity = 62/165 (37.58%), Postives = 87/165 (52.73%), Query Frame = 1
Query:   10 CNNSDGVIHSIELDHREEHLVRSNPGYSVVTLRYPPVRVLVYIKSADEAGLQLDGLPRGVVAFAPVEKPFSIVGIGKRKFTIRRRQLPLTAGCLSSVYRSQ----------------------------GQTMRTIILDIRNPPGNRMDPAAVYVALSRATCLED 420
              +    I SI+LD RE  +     GY VV L +PPVRV+++I++A +AGL L  L RG VA     + F + G+  +K++ +R QLPL  G LSSVYR+Q                            G+T++T++L +  P    MDP+A YVALSRAT  E 
Sbjct: 1030 ATSEKATIVSIDLDPREAIVDGEPEGYRVVHLVHPPVRVVIFIQTAYDAGLHLPSLNRGEVAVGVESRSFDVRGLHDKKYSFKRGQLPLLPGHLSSVYRAQHFIHAYMHTSVLPQLVSFCLSSCYLSSKGETIKTLLLHMTKPVDGVMDPSAAYVALSRATSFES 1194          
BLAST of mRNA_Ecto-sp13_S_contig5981.16555.1 vs. uniprot
Match: A0A409WW68_PSICY (ATP-dependent DNA helicase n=1 Tax=Psilocybe cyanescens TaxID=93625 RepID=A0A409WW68_PSICY)

HSP 1 Score: 92.8 bits (229), Expect = 3.880e-19
Identity = 55/144 (38.19%), Postives = 78/144 (54.17%), Query Frame = 1
Query:    7 VCNNSDGVIHSIELDHREEHLVRSNPGYSVVTLRYPPVRVLVYIKSADEAGLQLDGLPRGVVAFAPVEKPFSIVGIGKRKFT--IRRRQLPLTAGCLSSVYRSQGQTMRTIILDIRNPPGNRMDPAAVYVALSRATCLEDLYLL 432
            + N + G+IH I LD RE        G     L+YPP  +L   K      LQ DG+  G++   P E  FS+   GK+K T  I+RRQ  +TAG   + Y+SQGQT+  +I+D+  PP   + P  VYVA+SR+   + + LL
Sbjct: 1802 IANGTRGIIHDIILDEREWTHPTITDG--TAKLKYPPAMIL--FKPNKRTELQFDGVEPGLIPLTPSEATFSVKTKGKKKKTMLIKRRQYGITAGYAFTDYKSQGQTIEYVIIDLAKPPTGSLSPFGVYVAMSRSRGRDTIRLL 1941          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5981.16555.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2I1_ECTSI4.560e-6274.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G3U9_ECTSI7.480e-5974.31ATP-dependent DNA helicase n=2 Tax=Ectocarpus sili... [more]
A0A6H5KXW4_9PHAE4.480e-4668.29ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
A0A6H5K882_9PHAE8.120e-4154.86ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
A0A6H5L437_9PHAE1.490e-3967.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KIB1_9PHAE1.080e-3562.39ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
A0A6H5JCW5_9PHAE1.200e-3470.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN07_9PHAE5.800e-2947.47ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
A0A6H5JT57_9PHAE1.190e-2237.58ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
A0A409WW68_PSICY3.880e-1938.19ATP-dependent DNA helicase n=1 Tax=Psilocybe cyane... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5981contigEcto-sp13_S_contig5981:1065..1496 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score206.5
Seed ortholog evalue8.6e-51
Seed eggNOG ortholog2880.D7G3U9
Model size432
KEGG koko:K15255,ko:K20647
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.G-quadruplex DNA unwinding
EggNOG OGsCOG0507@1,KOG0987@2759
EC3.6.4.12
Cds size432
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03029,ko03032,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463831.1471643-CDS-Ecto-sp13_S_contig5981:1064..14961681463831.1471643-CDS-Ecto-sp13_S_contig5981:1064..1496Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5981 1065..1496 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5981.16555.1prot_Ecto-sp13_S_contig5981.16555.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5981 1065..1496 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5981.16555.1

>prot_Ecto-sp13_S_contig5981.16555.1 ID=prot_Ecto-sp13_S_contig5981.16555.1|Name=mRNA_Ecto-sp13_S_contig5981.16555.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=144bp
LGVCNNSDGVIHSIELDHREEHLVRSNPGYSVVTLRYPPVRVLVYIKSAD
EAGLQLDGLPRGVVAFAPVEKPFSIVGIGKRKFTIRRRQLPLTAGCLSSV
YRSQGQTMRTIILDIRNPPGNRMDPAAVYVALSRATCLEDLYLL
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mRNA from alignment at Ecto-sp13_S_contig5981:1065..1496-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5981.16555.1 ID=mRNA_Ecto-sp13_S_contig5981.16555.1|Name=mRNA_Ecto-sp13_S_contig5981.16555.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=432bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5981:1065..1496- (Ectocarpus species13 EcNAP12_S_4_19m)
CTGGGTGTGTGCAACAACTCCGACGGCGTCATCCACAGCATCGAGCTCGA CCATCGTGAAGAGCACCTCGTGCGCAGCAATCCGGGGTACTCTGTAGTGA CCCTTCGTTACCCGCCCGTCAGGGTGCTTGTCTACATCAAGTCCGCGGAT GAGGCTGGCCTGCAACTCGACGGTTTGCCGCGCGGGGTCGTCGCGTTTGC TCCCGTGGAGAAGCCCTTCTCGATCGTCGGCATCGGCAAGAGAAAGTTCA CCATCCGGCGGCGACAACTGCCGCTTACCGCCGGGTGTTTATCATCTGTG TATCGGAGCCAGGGCCAAACCATGCGGACCATCATCCTCGACATTCGCAA CCCACCAGGAAATAGGATGGACCCCGCAGCCGTTTACGTAGCTCTATCCA GAGCCACGTGTCTTGAAGACCTGTACCTCCTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5981:1065..1496-

>mRNA_Ecto-sp13_S_contig5981.16555.1 ID=mRNA_Ecto-sp13_S_contig5981.16555.1|Name=mRNA_Ecto-sp13_S_contig5981.16555.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=432bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5981:1065..1496- (Ectocarpus species13 EcNAP12_S_4_19m)
CTGGGTGTGTGCAACAACTCCGACGGCGTCATCCACAGCATCGAGCTCGA
CCATCGTGAAGAGCACCTCGTGCGCAGCAATCCGGGGTACTCTGTAGTGA
CCCTTCGTTACCCGCCCGTCAGGGTGCTTGTCTACATCAAGTCCGCGGAT
GAGGCTGGCCTGCAACTCGACGGTTTGCCGCGCGGGGTCGTCGCGTTTGC
TCCCGTGGAGAAGCCCTTCTCGATCGTCGGCATCGGCAAGAGAAAGTTCA
CCATCCGGCGGCGACAACTGCCGCTTACCGCCGGGTGTTTATCATCTGTG
TATCGGAGCCAGGGCCAAACCATGCGGACCATCATCCTCGACATTCGCAA
CCCACCAGGAAATAGGATGGACCCCGCAGCCGTTTACGTAGCTCTATCCA
GAGCCACGTGTCTTGAAGACCTGTACCTCCTC
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