mRNA_Ecto-sp13_S_contig597.16539.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig597.16539.1
Unique NamemRNA_Ecto-sp13_S_contig597.16539.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig597.16539.1 vs. uniprot
Match: A0A6H5JEE7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEE7_9PHAE)

HSP 1 Score: 128 bits (321), Expect = 2.800e-32
Identity = 79/94 (84.04%), Postives = 82/94 (87.23%), Query Frame = 3 
Query:   24 GMGLEDSGASEGGGAADGNTTPRRGRVGSASFGTTGEDLDVSTPLRTHKAGRNMFAKAPGSSSRSRGGXXXXXXXHGTTTPTSPSN-RSTCTDR 302
            G GL + GASEG  AADG+ TPR+GR GSASFGTTGED DVSTPLRTHKAGRNMFAKAPGSSSRSR G XXXXXXHG TTPTSPSN RSTCTDR
Sbjct:  415 GSGLANGGASEGXXAADGSPTPRKGRAGSASFGTTGEDPDVSTPLRTHKAGRNMFAKAPGSSSRSRVGGXXXXXXHGATTPTSPSNNRSTCTDR 508
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BLAST of mRNA_Ecto-sp13_S_contig597.16539.1 vs. uniprot
Match: D7FLC6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLC6_ECTSI)

HSP 1 Score: 96.7 bits (239), Expect = 3.320e-21
Identity = 52/68 (76.47%), Postives = 54/68 (79.41%), Query Frame = 3 
Query:   24 GMGLEDSGASEGGGAADGNTTPRRGRVGSASFGTTGEDLDVSTPLRTHKAGRNMFAKAPGSSSRSRGG 227
            G GL D G        DG+TTPRRGR GSASFGTTGED DV TPLRTHKAGRNMFAKAPGSSS+SRGG
Sbjct: 1187 GRGLADGGXXXXXXXXDGSTTPRRGRAGSASFGTTGEDPDVPTPLRTHKAGRNMFAKAPGSSSKSRGG 1254
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig597.16539.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JEE7_9PHAE2.800e-3284.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FLC6_ECTSI3.320e-2176.47Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig597contigEcto-sp13_S_contig597:8715..9018 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size304
Hectar predicted targeting categoryother localisation
Exons1
Cds size303
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463829.7330556-CDS-Ecto-sp13_S_contig597:8714..90171681463829.7330556-CDS-Ecto-sp13_S_contig597:8714..9017Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig597 8715..9017 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig597.16539.1prot_Ecto-sp13_S_contig597.16539.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig597 8715..9017 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig597.16539.1

>prot_Ecto-sp13_S_contig597.16539.1 ID=prot_Ecto-sp13_S_contig597.16539.1|Name=mRNA_Ecto-sp13_S_contig597.16539.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=101bp
LLLLFPPPEWGSRTAAHPRAGAPRMVTPPPEGAVWGVLPSARPAKTWTCP
RRSGPTRPGETCLRRPRGLPRGRAGAGGEEEAPTGRRPPRLRPTGRRAPI
G
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mRNA from alignment at Ecto-sp13_S_contig597:8715..9018+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig597.16539.1 ID=mRNA_Ecto-sp13_S_contig597.16539.1|Name=mRNA_Ecto-sp13_S_contig597.16539.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=304bp|location=Sequence derived from alignment at Ecto-sp13_S_contig597:8715..9018+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTGCTGCTGCTGTTTCCGCCGCCGGAATGGGGCTCGAGGACAGCGGCGCA
TCCGAGGGCGGGGGCGCCGCGGATGGTAACACCACCCCCAGAAGGGGCCG
TGTGGGGAGTGCTTCCTTCGGCACGACCGGCGAAGACCTGGACGTGTCCA
CGCCGCTCAGGACCCACAAGGCCGGGCGAAACATGTTTGCGAAGGCCCCG
GGGTCTTCCTCGAGGTCGCGCGGGGGCAGGGGGGGAGGAGGAAGCTCCCA
CGGGACGACGACCCCCACGTCTCCGTCCAACAGGTCGACGTGCACCGATC
GGTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig597:8715..9018+

>mRNA_Ecto-sp13_S_contig597.16539.1 ID=mRNA_Ecto-sp13_S_contig597.16539.1|Name=mRNA_Ecto-sp13_S_contig597.16539.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=303bp|location=Sequence derived from alignment at Ecto-sp13_S_contig597:8715..9018+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTGCTGCTGCTGTTTCCGCCGCCGGAATGGGGCTCGAGGACAGCGGCGCA
TCCGAGGGCGGGGGCGCCGCGGATGGTAACACCACCCCCAGAAGGGGCCG
TGTGGGGAGTGCTTCCTTCGGCACGACCGGCGAAGACCTGGACGTGTCCA
CGCCGCTCAGGACCCACAAGGCCGGGCGAAACATGTTTGCGAAGGCCCCG
GGGTCTTCCTCGAGGTCGCGCGGGGGCAGGGGGGGAGGAGGAAGCTCCCA
CGGGACGACGACCCCCACGTCTCCGTCCAACAGGTCGACGTGCACCGATC
GGT
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