mRNA_Ecto-sp13_S_contig59638.16529.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig59638.16529.1 vs. uniprot
Match: D7G4G5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4G5_ECTSI) HSP 1 Score: 431 bits (1107), Expect = 3.120e-147 Identity = 218/236 (92.37%), Postives = 223/236 (94.49%), Query Frame = 1
Query: 1 NKLASAACAFDGRVTAEIATRLRARIGGEVYIAPGEADPQLVVFQDIHLATGANVYVYANDSDLTVLGVRDLLVEVVKNTRGELIGRCVRQRLLFQPTAWSFLRSGDAHGWLRQLHGIHTPVDEGLDYTPLPEPTARRRLLLFAMIVGNDFAKFKNVGPVTAARLAFVDAASGVWATSLLPFDAVVGDLASRLLVESKEEDTPAARPRGVEPAERRTPTFVRRADPRGHHPPYRSV 708
NKLASAACAFDGRVTAEIATRLRARI GEVYIAPG+ADPQLVVFQDIHLATGANVYVYANDSDLTVLGVRD LVEVVKN RGEL+GR VRQRLLFQPTAWSFLRSGDAHGWLRQLHGIH PVDEGLDYTPLPEPT RRRLLLFA+IVGNDFAKFKNVGPVTAARLAFVD SGVWA SLLPFDAVVGDLASRLLVES+EEDTPAARPRGVEPAERRTPTFVRR D G+HPPYR V
Sbjct: 55 NKLASAACAFDGRVTAEIATRLRARIRGEVYIAPGKADPQLVVFQDIHLATGANVYVYANDSDLTVLGVRDRLVEVVKNARGELVGRSVRQRLLFQPTAWSFLRSGDAHGWLRQLHGIHQPVDEGLDYTPLPEPTGRRRLLLFAVIVGNDFAKFKNVGPVTAARLAFVDTESGVWAASLLPFDAVVGDLASRLLVESREEDTPAARPRGVEPAERRTPTFVRRPDQGGNHPPYRDV 290
BLAST of mRNA_Ecto-sp13_S_contig59638.16529.1 vs. uniprot
Match: A0A6H5KVY6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVY6_9PHAE) HSP 1 Score: 402 bits (1033), Expect = 6.440e-132 Identity = 203/205 (99.02%), Postives = 204/205 (99.51%), Query Frame = 1
Query: 1 NKLASAACAFDGRVTAEIATRLRARIGGEVYIAPGEADPQLVVFQDIHLATGANVYVYANDSDLTVLGVRDLLVEVVKNTRGELIGRCVRQRLLFQPTAWSFLRSGDAHGWLRQLHGIHTPVDEGLDYTPLPEPTARRRLLLFAMIVGNDFAKFKNVGPVTAARLAFVDAASGVWATSLLPFDAVVGDLASRLLVESKEEDTPAA 615
NKLASAACAFDGRVTAEIATRLRARIGGEVYIAPGEADPQLVVFQDIHLATG NVYVYANDSDLTVLGVRDLLVEVVKNTRGELIGRCVRQRLLFQPTAWSFLRSGDAHGWLRQLHGIHTPVDEGLDYTPLPEPTARRRL+LFAMIVGNDFAKFKNVGPVTAARLAFVDAASGVWATSLLPFDAVVGDLASRLLVESKEEDTPAA
Sbjct: 327 NKLASAACAFDGRVTAEIATRLRARIGGEVYIAPGEADPQLVVFQDIHLATGPNVYVYANDSDLTVLGVRDLLVEVVKNTRGELIGRCVRQRLLFQPTAWSFLRSGDAHGWLRQLHGIHTPVDEGLDYTPLPEPTARRRLVLFAMIVGNDFAKFKNVGPVTAARLAFVDAASGVWATSLLPFDAVVGDLASRLLVESKEEDTPAA 531
BLAST of mRNA_Ecto-sp13_S_contig59638.16529.1 vs. uniprot
Match: D7G0K2_ECTSI (Exonuclease 1 n=3 Tax=Ectocarpus TaxID=2879 RepID=D7G0K2_ECTSI) HSP 1 Score: 386 bits (991), Expect = 1.550e-126 Identity = 195/206 (94.66%), Postives = 198/206 (96.12%), Query Frame = 1
Query: 1 NKLASAACAFDGRVTAEIATRLRARIGGEVYIAPGEADPQLVVFQDIHLATGANVYVYANDSDLTVLGVRDLLVEVVKNTRGELIGRCVRQRLLFQPTAWSFLRSGDAHGWLRQLHGIHTPVDEGLDYTPLPEPTARRRLLLFAMIVGNDFAKFKNVGPVTAARLAFVDAASGVWATSLLPFDAVVGDLASRLLVESKEEDTPAAR 618
NKLASAACAFDGRVTAEIATRLRARI GEVYIAPGEADPQLVVFQDIHLATGANVYVYANDSDLTVLGVRDLLVEVVKN RGEL+GRCVRQRLLFQPTAWSFLRSGDAHGWLRQLHGIH PVDEGLDYTPLPEPTARRRLLLFA+IVGNDFAKFKNVGPVTAARLAFVD SGVWA SLLPFDAVVG LASRLLVES+EEDTPA R
Sbjct: 82 NKLASAACAFDGRVTAEIATRLRARIRGEVYIAPGEADPQLVVFQDIHLATGANVYVYANDSDLTVLGVRDLLVEVVKNARGELVGRCVRQRLLFQPTAWSFLRSGDAHGWLRQLHGIHQPVDEGLDYTPLPEPTARRRLLLFAIIVGNDFAKFKNVGPVTAARLAFVDTESGVWAASLLPFDAVVGYLASRLLVESREEDTPAVR 287
BLAST of mRNA_Ecto-sp13_S_contig59638.16529.1 vs. uniprot
Match: D7FZU5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZU5_ECTSI) HSP 1 Score: 306 bits (783), Expect = 2.850e-98 Identity = 155/172 (90.12%), Postives = 157/172 (91.28%), Query Frame = 1
Query: 1 NKLASAACAFDGRVTAEIATRLRARIGGEVYIAPGEADPQLVVFQDIHLATGANVYVYANDSDLTVLGVRDLLVEVVKNTRGELIGRCVRQRLLFQPTAWSFLRSGDAHGWLRQLHGIHTPVDEGLDYTPLPEPTARRRLLLFAMIVGNDFAKFKNVGPVTAARLAFVDAAS 516
NKLASAACAFDGRVTAEIATRLRARI GEV IAPGEADPQL VFQDIHLATGANVYVYANDSD TVLGV DLLVEVVKN RGEL+GRCVRQRLLFQPT WSFLRSGD G LRQLHGIH PVDEG DYTPLPEPTARRRLLLFA+IVG DFAKFKNVGPVTAARLAFVD S
Sbjct: 55 NKLASAACAFDGRVTAEIATRLRARIRGEVNIAPGEADPQLAVFQDIHLATGANVYVYANDSDFTVLGVLDLLVEVVKNARGELVGRCVRQRLLFQPTTWSFLRSGDVRGRLRQLHGIHQPVDEGFDYTPLPEPTARRRLLLFAIIVGKDFAKFKNVGPVTAARLAFVDTES 226
BLAST of mRNA_Ecto-sp13_S_contig59638.16529.1 vs. uniprot
Match: A0A6H5KFX7_9PHAE (Exonuclease 1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFX7_9PHAE) HSP 1 Score: 213 bits (541), Expect = 2.680e-60 Identity = 117/209 (55.98%), Postives = 145/209 (69.38%), Query Frame = 1
Query: 1 NKLASAACAFDGRVTAEIATRLRARIGGEVYIAPGEADPQLVVFQDIHLATGANVYVYANDSDLTVLGVRDLLVEVVKNTRGELIGRCVRQRLLFQPTAWSFLRSGDAHGWLRQLHGI---HTPVDEGLDYTPLPEPTARRRLLLFAMIVGNDFAKFKNVGPVTAARLAFVDAASGVWATS-LLPFDAVVGDLASRLLVESKEEDTPAA 615
NK AS AC FD RV A +AT LR +I GEVYIAP EADPQ+V+FQDI+L TG VYVYANDSDL VLGVR LL +V G L G C+R RL+FQP W+F + + +LRQLHG+ HTP L +PL E ARRRL LFA + GNDFA FKN+GPV AA++AF T+ ++ F+A+VG+LA ++ +SKEE+TPAA
Sbjct: 121 NKKASNACVFDSRVVARVATLLRPQIAGEVYIAPREADPQIVIFQDIYLETGCTVYVYANDSDLIVLGVRSLLWDVRGTDAGNLTGVCIRSRLIFQPPEWAFAIDAEGYAFLRQLHGLPRGHTP---NLRASPLTEAAARRRLSLFATLAGNDFADFKNIGPVRAAKVAFELIEPDPRGTAAVVSFEALVGNLARIVVQDSKEEETPAA 326
BLAST of mRNA_Ecto-sp13_S_contig59638.16529.1 vs. uniprot
Match: D7FZG7_ECTSI (Exonuclease I Exo1 n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZG7_ECTSI) HSP 1 Score: 182 bits (463), Expect = 2.730e-50 Identity = 117/206 (56.80%), Postives = 121/206 (58.74%), Query Frame = 1
Query: 1 NKLASAACAFDGRVTAEIATRLRARIGGEVYIAPGEADPQLVVFQDIHLATGANVYVYANDSDLTVLGVRDLLVEVVKNTRGELIGRCVRQRLLFQPTAWSFLRSGDAHGWLRQLHGIHTPVDEGLDYTPLPEPTARRRLLLFAMIVGNDFAKFKNVGPVTAARLAFVDAASGVWATSLLPFDAVVGDLASRLLVESKEEDTPAAR 618
NKLASAACAF+GRVTAEIATR RA I GEVYIAPGEADPQLVVFQDIHLATGANVYVYANDSDLTVLGVRDLLVEVVKN T+R K + ARLAFVD SGVWA SL PFDAVVGDLASRLLVES+EEDTPAAR
Sbjct: 82 NKLASAACAFNGRVTAEIATRSRALIRGEVYIAPGEADPQLVVFQDIHLATGANVYVYANDSDLTVLGVRDLLVEVVKNAT-----------------------------------------------------TSRNS---------------KMSDQLLPARLAFVDTESGVWAASLQPFDAVVGDLASRLLVESREEDTPAAR 219
BLAST of mRNA_Ecto-sp13_S_contig59638.16529.1 vs. uniprot
Match: D7G6L7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6L7_ECTSI) HSP 1 Score: 90.9 bits (224), Expect = 7.610e-18 Identity = 55/105 (52.38%), Postives = 72/105 (68.57%), Query Frame = 1
Query: 319 DAHGW--LRQLHGI---HTPVDEGLDYTPLPEPTARRRLLLFAMIVGNDFAKFKNVGPVTAARLAFVDAASGVWATS-LLPFDAVVGDLASRLLVESKEEDTPAA 615
DA G+ LRQLHG+ HTP L +PL E ARRRL LFA + GNDFA FKN+GPV AA++AF T+ ++PF+A+VG+LA ++ +SKEE+TPAA
Sbjct: 2 DAEGYDFLRQLHGLPRRHTP---NLRASPLTEAAARRRLSLFATLAGNDFADFKNIGPVRAAKVAFELIEPDPRGTAAVVPFEALVGNLARIVVQDSKEEETPAA 103
BLAST of mRNA_Ecto-sp13_S_contig59638.16529.1 vs. uniprot
Match: D7FQM4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQM4_ECTSI) HSP 1 Score: 90.9 bits (224), Expect = 1.650e-17 Identity = 55/105 (52.38%), Postives = 72/105 (68.57%), Query Frame = 1
Query: 319 DAHGW--LRQLHGI---HTPVDEGLDYTPLPEPTARRRLLLFAMIVGNDFAKFKNVGPVTAARLAFVDAASGVWATS-LLPFDAVVGDLASRLLVESKEEDTPAA 615
DA G+ LRQLHG+ HTP L +PL E ARRRL LFA + GNDFA FKN+GPV AA++AF T+ ++PF+A+VG+LA ++ +SKEE+TPAA
Sbjct: 2 DAEGYDFLRQLHGLPRRHTP---NLRASPLTEAAARRRLSLFATLAGNDFADFKNIGPVRAAKVAFELIEPDPRGTAAVVPFEALVGNLARIVVQDSKEEETPAA 103 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig59638.16529.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig59638.16529.1 >prot_Ecto-sp13_S_contig59638.16529.1 ID=prot_Ecto-sp13_S_contig59638.16529.1|Name=mRNA_Ecto-sp13_S_contig59638.16529.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=242bp NKLASAACAFDGRVTAEIATRLRARIGGEVYIAPGEADPQLVVFQDIHLAback to top mRNA from alignment at Ecto-sp13_S_contig59638:69..841- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig59638.16529.1 ID=mRNA_Ecto-sp13_S_contig59638.16529.1|Name=mRNA_Ecto-sp13_S_contig59638.16529.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=773bp|location=Sequence derived from alignment at Ecto-sp13_S_contig59638:69..841- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig59638:69..841- >mRNA_Ecto-sp13_S_contig59638.16529.1 ID=mRNA_Ecto-sp13_S_contig59638.16529.1|Name=mRNA_Ecto-sp13_S_contig59638.16529.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=726bp|location=Sequence derived from alignment at Ecto-sp13_S_contig59638:69..841- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |