mRNA_Ecto-sp13_S_contig59637.16528.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig59637.16528.1
Unique NamemRNA_Ecto-sp13_S_contig59637.16528.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig59637.16528.1 vs. uniprot
Match: D7G7K1_ECTSI (Rit1_C domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7K1_ECTSI)

HSP 1 Score: 142 bits (358), Expect = 1.660e-41
Identity = 66/67 (98.51%), Postives = 67/67 (100.00%), Query Frame = 1
Query:    1 RNGLWYGKEWDGTCYFKSTDGHSRRWAFSYTRLNIHLAAAAAAAGGCIVVDSTRAGKRFPDSFTATV 201
            RNGLWYGK+WDGTCYFKSTDGHSRRWAFSYTRLNIHLAAAAAAAGGCIVVDSTRAGKRFPDSFTATV
Sbjct:   34 RNGLWYGKDWDGTCYFKSTDGHSRRWAFSYTRLNIHLAAAAAAAGGCIVVDSTRAGKRFPDSFTATV 100          
BLAST of mRNA_Ecto-sp13_S_contig59637.16528.1 vs. uniprot
Match: A0A6H5KM30_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM30_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 1.300e-29
Identity = 61/68 (89.71%), Postives = 62/68 (91.18%), Query Frame = 1
Query:   73 RWAFSYTRLNIHLAAAAAAAGGCIVVDSTRAGKRFPDSFTATVRTRHDSSCANVCCILRSSTAQHVLR 276
            RWAFSYTRLNIHLAAAAAAAGGCIVVDSTRAGKRFPDSFT TVRT HD   ANVC ILRS+TAQHVLR
Sbjct:    3 RWAFSYTRLNIHLAAAAAAAGGCIVVDSTRAGKRFPDSFTTTVRTHHDFGFANVCFILRSATAQHVLR 70          
BLAST of mRNA_Ecto-sp13_S_contig59637.16528.1 vs. uniprot
Match: A0A835YSK0_9STRA (Initiator tRNA phosphoribosyl transferase-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSK0_9STRA)

HSP 1 Score: 109 bits (272), Expect = 2.850e-27
Identity = 50/69 (72.46%), Postives = 56/69 (81.16%), Query Frame = 1
Query:    1 RNGLWYG--KEWDGTCYFKSTDGHSRRWAFSYTRLNIHLAAAAAAAGGCIVVDSTRAGKRFPDSFTATV 201
            RNG WYG    W+GTCYFKS DGH  +WAFSYTRLN+H+A  AA AGGC+VVDSTR GKRFPD+ TATV
Sbjct:   91 RNGQWYGPPSAWEGTCYFKSADGHCGQWAFSYTRLNLHVACKAAMAGGCVVVDSTRRGKRFPDALTATV 159          
BLAST of mRNA_Ecto-sp13_S_contig59637.16528.1 vs. uniprot
Match: A0A7S3UNI5_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UNI5_HETAK)

HSP 1 Score: 97.8 bits (242), Expect = 7.840e-24
Identity = 47/69 (68.12%), Postives = 52/69 (75.36%), Query Frame = 1
Query:    1 RNGLWYG--KEWDGTCYFKSTDGHSRRWAFSYTRLNIHLAAAAAAAGGCIVVDSTRAGKRFPDSFTATV 201
            RNG+WY   +EWDG CYFKS DGH  RW FS  RLN+H+A AAA AGG +VVDSTR GK  PDS TATV
Sbjct:   48 RNGVWYAPEEEWDGLCYFKSADGHEGRWTFSQGRLNLHVARAAAEAGGVVVVDSTRRGKDCPDSLTATV 116          
BLAST of mRNA_Ecto-sp13_S_contig59637.16528.1 vs. uniprot
Match: A0A7R9VGJ9_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9VGJ9_9CHLO)

HSP 1 Score: 94.4 bits (233), Expect = 9.620e-23
Identity = 47/89 (52.81%), Postives = 59/89 (66.29%), Query Frame = 1
Query:    1 RNGLWYGKEWDGTCYFKSTDGHSRRWAFSYTRLNIHLAAAAAAAGGCIVVDSTRAGKRFPDSFTATVRTRHDSSCANVCCILRSSTAQH 267
            R GLWY    DGTCYFKSTDGH+  W+FS TRLN H+A  AA +GG I+VD+TR GKR+ D+FT TV           CC++  + A+H
Sbjct:   29 RCGLWYTALDDGTCYFKSTDGHTNNWSFSTTRLNWHVATTAAESGGAIIVDATRRGKRYSDAFTKTVPIW--------CCVVNRAVARH 109          
BLAST of mRNA_Ecto-sp13_S_contig59637.16528.1 vs. uniprot
Match: U5D482_AMBTC (Uncharacterized protein n=5 Tax=Amborella trichopoda TaxID=13333 RepID=U5D482_AMBTC)

HSP 1 Score: 99.4 bits (246), Expect = 2.440e-22
Identity = 44/67 (65.67%), Postives = 53/67 (79.10%), Query Frame = 1
Query:    1 RNGLWYGKEWDGTCYFKSTDGHSRRWAFSYTRLNIHLAAAAAAAGGCIVVDSTRAGKRFPDSFTATV 201
            R GLWY + +D TCYFKSTDGH+  W+FS +RLN+HLA  AA  GGCI+VDSTR GKRFPDS + T+
Sbjct:   83 RCGLWYSQRFDATCYFKSTDGHTGNWSFSTSRLNLHLAELAAQRGGCIIVDSTRRGKRFPDSMSKTI 149          
BLAST of mRNA_Ecto-sp13_S_contig59637.16528.1 vs. uniprot
Match: D8RSU0_SELML (Uncharacterized protein (Fragment) n=4 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8RSU0_SELML)

HSP 1 Score: 99.0 bits (245), Expect = 2.790e-22
Identity = 43/67 (64.18%), Postives = 54/67 (80.60%), Query Frame = 1
Query:    1 RNGLWYGKEWDGTCYFKSTDGHSRRWAFSYTRLNIHLAAAAAAAGGCIVVDSTRAGKRFPDSFTATV 201
            R GLWY +++D TCYFKSTDGH+  W F+  RLNIH+AA AA +GGC++VDSTR GKRFPDS + T+
Sbjct:   61 RCGLWYARKFDDTCYFKSTDGHTGNWGFNPARLNIHIAAIAARSGGCMIVDSTRKGKRFPDSMSKTI 127          
BLAST of mRNA_Ecto-sp13_S_contig59637.16528.1 vs. uniprot
Match: A8HVT9_CHLRE (Predicted protein (Fragment) n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A8HVT9_CHLRE)

HSP 1 Score: 97.1 bits (240), Expect = 3.010e-22
Identity = 43/67 (64.18%), Postives = 53/67 (79.10%), Query Frame = 1
Query:    1 RNGLWYGKEWDGTCYFKSTDGHSRRWAFSYTRLNIHLAAAAAAAGGCIVVDSTRAGKRFPDSFTATV 201
            R GLWY ++ DGTCYFKSTDGH+  W+FS TRLN+H+A  AA  GG I+VD+TR GKRFPD+ T T+
Sbjct:   50 RCGLWYARQPDGTCYFKSTDGHNGNWSFSCTRLNLHVAEVAARQGGVIIVDATRKGKRFPDAMTKTI 116          
BLAST of mRNA_Ecto-sp13_S_contig59637.16528.1 vs. uniprot
Match: A0A388K2T9_CHABU (Ig-like domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388K2T9_CHABU)

HSP 1 Score: 98.2 bits (243), Expect = 6.740e-22
Identity = 42/67 (62.69%), Postives = 53/67 (79.10%), Query Frame = 1
Query:    1 RNGLWYGKEWDGTCYFKSTDGHSRRWAFSYTRLNIHLAAAAAAAGGCIVVDSTRAGKRFPDSFTATV 201
            R GLWY + +DGTCYFKSTDGH   W+ S TRLN+H+A AAA  GGC++VD+TR GKRFPDS + ++
Sbjct:  105 RCGLWYSRRFDGTCYFKSTDGHMGNWSLSLTRLNMHVAMAAAIRGGCVIVDATRRGKRFPDSLSKSI 171          
BLAST of mRNA_Ecto-sp13_S_contig59637.16528.1 vs. uniprot
Match: A0A835V6N6_VANPL (Uncharacterized protein n=1 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835V6N6_VANPL)

HSP 1 Score: 97.8 bits (242), Expect = 8.320e-22
Identity = 44/67 (65.67%), Postives = 51/67 (76.12%), Query Frame = 1
Query:    1 RNGLWYGKEWDGTCYFKSTDGHSRRWAFSYTRLNIHLAAAAAAAGGCIVVDSTRAGKRFPDSFTATV 201
            R GLWY   ++ TCYFKSTDGH+  W+FS TRLN+HLA  A   GGCIVVDSTR GKRFPDS + T+
Sbjct:   61 RCGLWYSPRFEATCYFKSTDGHANNWSFSTTRLNLHLAFLAGQRGGCIVVDSTRKGKRFPDSMSKTI 127          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig59637.16528.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G7K1_ECTSI1.660e-4198.51Rit1_C domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5KM30_9PHAE1.300e-2989.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YSK0_9STRA2.850e-2772.46Initiator tRNA phosphoribosyl transferase-domain-c... [more]
A0A7S3UNI5_HETAK7.840e-2468.12Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7R9VGJ9_9CHLO9.620e-2352.81Hypothetical protein (Fragment) n=1 Tax=Chlamydomo... [more]
U5D482_AMBTC2.440e-2265.67Uncharacterized protein n=5 Tax=Amborella trichopo... [more]
D8RSU0_SELML2.790e-2264.18Uncharacterized protein (Fragment) n=4 Tax=Selagin... [more]
A8HVT9_CHLRE3.010e-2264.18Predicted protein (Fragment) n=1 Tax=Chlamydomonas... [more]
A0A388K2T9_CHABU6.740e-2262.69Ig-like domain-containing protein n=1 Tax=Chara br... [more]
A0A835V6N6_VANPL8.320e-2265.67Uncharacterized protein n=1 Tax=Vanilla planifolia... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig59637contigEcto-sp13_S_contig59637:1..487 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score140.6
Seed ortholog evalue3.7e-31
Seed eggNOG ortholog2880.D7G7K1
Preferred nameRIT1
Model size276
KEGG koko:K15463
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006464,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016757,GO:0016763,GO:0019538,GO:0019988,GO:0034470,GO:0034641,GO:0034660,GO:0036211,GO:0043170,GO:0043399,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564
Exons2
EggNOG free text desc.tRNA A64-2'-O-ribosylphosphate transferase activity
EggNOG OGsKOG2634@1,KOG2634@2759
Cds size276
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03016
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463828.9407256-CDS-Ecto-sp13_S_contig59637:0..741681463828.9407256-CDS-Ecto-sp13_S_contig59637:0..74Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig59637 1..74 +
1681463828.9549031-CDS-Ecto-sp13_S_contig59637:285..4871681463828.9549031-CDS-Ecto-sp13_S_contig59637:285..487Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig59637 286..487 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig59637.16528.1prot_Ecto-sp13_S_contig59637.16528.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig59637 1..487 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig59637.16528.1

>prot_Ecto-sp13_S_contig59637.16528.1 ID=prot_Ecto-sp13_S_contig59637.16528.1|Name=mRNA_Ecto-sp13_S_contig59637.16528.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=92bp
RNGLWYGKEWDGTCYFKSTDGHSRRWAFSYTRLNIHLAAAAAAAGGCIVV
DSTRAGKRFPDSFTATVRTRHDSSCANVCCILRSSTAQHVLR
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mRNA from alignment at Ecto-sp13_S_contig59637:1..487+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig59637.16528.1 ID=mRNA_Ecto-sp13_S_contig59637.16528.1|Name=mRNA_Ecto-sp13_S_contig59637.16528.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=487bp|location=Sequence derived from alignment at Ecto-sp13_S_contig59637:1..487+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGGAACGGCCTGTGGTATGGTAAGGAATGGGATGGGACGTGCTACTTTAA GTCCACGGACGGGCACAGCCGAAGGTAAGGCGCCGTACATCCGGTACACC GTACCCGTACAGGCTACCAATCCAACGGTACATACACCAAGTATCACTGG GTAAAGGCGCTGAGTAGTGTGTTATGGTGAGGCGCTAGTGCTAGAAAACT CCCAGGTCGTAGCGAAAGCACTGGGTTCGTCCGTCGGTTGACTCCAGCCT TGCCCCCTCTCTAACTCTCTATCGCCATGTTTTAGATGGGCCTTCAGCTA CACCCGCCTGAACATCCACCTGGCCGCCGCTGCCGCCGCGGCAGGAGGGT GCATCGTGGTGGACTCTACCCGAGCTGGCAAGCGCTTTCCAGACTCCTTC ACCGCGACGGTACGCACCCGCCACGACTCTAGTTGCGCGAATGTTTGCTG CATTTTGCGTTCATCAACAGCACAGCACGTTCTACGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig59637:1..487+

>mRNA_Ecto-sp13_S_contig59637.16528.1 ID=mRNA_Ecto-sp13_S_contig59637.16528.1|Name=mRNA_Ecto-sp13_S_contig59637.16528.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=276bp|location=Sequence derived from alignment at Ecto-sp13_S_contig59637:1..487+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGGAACGGCCTGTGGTATGGTAAGGAATGGGATGGGACGTGCTACTTTAA
GTCCACGGACGGGCACAGCCGAAGATGGGCCTTCAGCTACACCCGCCTGA
ACATCCACCTGGCCGCCGCTGCCGCCGCGGCAGGAGGGTGCATCGTGGTG
GACTCTACCCGAGCTGGCAAGCGCTTTCCAGACTCCTTCACCGCGACGGT
ACGCACCCGCCACGACTCTAGTTGCGCGAATGTTTGCTGCATTTTGCGTT
CATCAACAGCACAGCACGTTCTACGT
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