mRNA_Ecto-sp13_S_contig59627.16524.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig59627.16524.1
Unique NamemRNA_Ecto-sp13_S_contig59627.16524.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig59627.16524.1 vs. uniprot
Match: A0A6H5K540_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K540_9PHAE)

HSP 1 Score: 188 bits (477), Expect = 5.580e-57
Identity = 88/92 (95.65%), Postives = 91/92 (98.91%), Query Frame = 1 
Query:   61 AVCDAQYRIMAWTINCPGSENDRTAFNFSGFDKLLAGLPEGHFVVGDAAYGASERVVVPFPGTSLSASQDACNYYVSQCRMAIEQTYGILVS 336
            AVCDAQYRIMAW +NCPGS+NDRTAFNFSGFDKLLAGLPEGHFVVGDAAYGASERVVVPFPGTSLSASQDACNYY+SQCRMAIEQTYGILVS
Sbjct:  141 AVCDAQYRIMAWMMNCPGSQNDRTAFNFSGFDKLLAGLPEGHFVVGDAAYGASERVVVPFPGTSLSASQDACNYYMSQCRMAIEQTYGILVS 232
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BLAST of mRNA_Ecto-sp13_S_contig59627.16524.1 vs. uniprot
Match: A0A6H5L6B6_9PHAE (DDE Tnp4 domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6B6_9PHAE)

HSP 1 Score: 189 bits (481), Expect = 9.990e-57
Identity = 89/92 (96.74%), Postives = 91/92 (98.91%), Query Frame = 1 
Query:   58 QAVCDAQYRIMAWTINCPGSENDRTAFNFSGFDKLLAGLPEGHFVVGDAAYGASERVVVPFPGTSLSASQDACNYYVSQCRMAIEQTYGILV 333
            QAVCDAQYRIMAW +NCPGS+NDRTAFNFSGFDKLLAGLPEGHFVVGDAAYGASERVVVPFPGTSLSASQDACNYYVSQCRMAIEQTYGILV
Sbjct:  211 QAVCDAQYRIMAWMMNCPGSQNDRTAFNFSGFDKLLAGLPEGHFVVGDAAYGASERVVVPFPGTSLSASQDACNYYVSQCRMAIEQTYGILV 302
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BLAST of mRNA_Ecto-sp13_S_contig59627.16524.1 vs. uniprot
Match: A0A6H5KNF2_9PHAE (DDE Tnp4 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNF2_9PHAE)

HSP 1 Score: 184 bits (467), Expect = 2.280e-56
Identity = 86/92 (93.48%), Postives = 91/92 (98.91%), Query Frame = 1 
Query:   58 QAVCDAQYRIMAWTINCPGSENDRTAFNFSGFDKLLAGLPEGHFVVGDAAYGASERVVVPFPGTSLSASQDACNYYVSQCRMAIEQTYGILV 333
            QAVCDAQYRI+AWT++CPGS+NDRTAFNF+ FDKLLAGLPEGHFVVGDAAYGASERVVVPFPGTSLSASQDACNYYVSQCRMAIEQTYGILV
Sbjct:   59 QAVCDAQYRIVAWTMSCPGSQNDRTAFNFAWFDKLLAGLPEGHFVVGDAAYGASERVVVPFPGTSLSASQDACNYYVSQCRMAIEQTYGILV 150
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BLAST of mRNA_Ecto-sp13_S_contig59627.16524.1 vs. uniprot
Match: A0A6H5K6M2_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6M2_9PHAE)

HSP 1 Score: 127 bits (320), Expect = 7.090e-33
Identity = 58/92 (63.04%), Postives = 73/92 (79.35%), Query Frame = 1 
Query:   58 QAVCDAQYRIMAWTINCPGSENDRTAFNFSGFDKLLAGLPEGHFVVGDAAYGASERVVVPFPGTSLSASQDACNYYVSQCRMAIEQTYGILV 333
            Q +C+A Y I+ WT+NCPGS+NDRTAF  SGFD LL+ +P   F+VGDAAY AS RV+VP PGT+L+ SQDA N+Y SQ R++IEQ +GILV
Sbjct:  222 QGICNASYEIITWTMNCPGSQNDRTAFKHSGFDALLSKMPPDCFIVGDAAYPASNRVLVPDPGTALTLSQDAYNFYQSQARISIEQAFGILV 313
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BLAST of mRNA_Ecto-sp13_S_contig59627.16524.1 vs. uniprot
Match: A0A6H5KCG0_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCG0_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 3.200e-32
Identity = 55/92 (59.78%), Postives = 76/92 (82.61%), Query Frame = 1 
Query:   58 QAVCDAQYRIMAWTINCPGSENDRTAFNFSGFDKLLAGLPEGHFVVGDAAYGASERVVVPFPGTSLSASQDACNYYVSQCRMAIEQTYGILV 333
            QAVC+A+Y+I AWT+NCPGS NDRTAF  SGF+++L  LP+G ++VGD AY AS++V+VP+PGT+L+ SQD+ N+Y SQ R+ IEQ +G +V
Sbjct:  152 QAVCNARYKITAWTMNCPGSCNDRTAFKHSGFERVLKTLPKGAYIVGDGAYPASDQVLVPYPGTTLTPSQDSYNFYQSQARIFIEQAFGNMV 243
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BLAST of mRNA_Ecto-sp13_S_contig59627.16524.1 vs. uniprot
Match: A0A6H5K3F2_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3F2_9PHAE)

HSP 1 Score: 124 bits (311), Expect = 1.300e-31
Identity = 57/92 (61.96%), Postives = 74/92 (80.43%), Query Frame = 1 
Query:   58 QAVCDAQYRIMAWTINCPGSENDRTAFNFSGFDKLLAGLPEGHFVVGDAAYGASERVVVPFPGTSLSASQDACNYYVSQCRMAIEQTYGILV 333
            Q VC+A+Y I+AWT+NCPGS NDRTAF  S F  +L  LP G ++VGDAAY AS++V+VP+PGTSL+ SQDA N+Y SQ R++IEQ +GI+V
Sbjct:  218 QGVCNARYEIIAWTMNCPGSCNDRTAFKHSVFGTVLKTLPPGAYIVGDAAYPASDQVLVPYPGTSLTRSQDAYNFYQSQARISIEQAFGIMV 309
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BLAST of mRNA_Ecto-sp13_S_contig59627.16524.1 vs. uniprot
Match: A0A6H5J641_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J641_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 2.380e-24
Identity = 47/92 (51.09%), Postives = 64/92 (69.57%), Query Frame = 1 
Query:   58 QAVCDAQYRIMAWTINCPGSENDRTAFNFSGFDKLLAGLPEGHFVVGDAAYGASERVVVPFPGTSLSASQDACNYYVSQCRMAIEQTYGILV 333
            Q +CDA Y + A   N PGS N R A+  + FD+L+ GLP  + VVGD AYGA+++++VP+PG  L A Q A N++ SQ RM IEQT+GI+V
Sbjct:    3 QVICDADYIVTAACCNTPGSTNVRQAYKEAEFDQLVEGLPGNYDVVGDTAYGATDKMLVPYPGCDLDADQQAFNFFQSQGRMCIEQTFGIMV 94
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BLAST of mRNA_Ecto-sp13_S_contig59627.16524.1 vs. uniprot
Match: A0A6H5JJA1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJA1_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 4.320e-22
Identity = 52/73 (71.23%), Postives = 54/73 (73.97%), Query Frame = 1 
Query:  115 SENDRTAFNFSGFDKLLAGLPEGHFVVGDAAYGASERVVVPFPGTSLSASQDACNYYVSQCRMAIEQTYGILV 333
            S+NDRTAFNFSGFDKLLAGLPEGHFVVG+AAYGASERVVVPFPGTS                   EQTYGILV
Sbjct:  225 SQNDRTAFNFSGFDKLLAGLPEGHFVVGNAAYGASERVVVPFPGTS----------------PPXEQTYGILV 281
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BLAST of mRNA_Ecto-sp13_S_contig59627.16524.1 vs. uniprot
Match: A0A6H5KQF5_9PHAE (DDE Tnp4 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQF5_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 3.100e-21
Identity = 44/94 (46.81%), Postives = 63/94 (67.02%), Query Frame = 1 
Query:   55 LQAVCDAQYRIMAWTINCPGSENDRTAFNFSGFDKLLAGLPEGHFVVGDAAYGASERVVVPFPGTSLSASQDACNYYVSQCRMAIEQTYGILVS 336
            +QA+C A YR  A +   PGS ND  A+N S   K +A LP G  ++GDAAY   E+++ P+PG  L A +D+ N+++SQ R+ IEQ++GILVS
Sbjct:   94 IQAMCTADYRFYAMSATSPGSTNDWVAWNRSSLAKAVARLPAGFHIIGDAAYPIGEKLLTPYPGRLLPAGEDSFNFHLSQLRVKIEQSFGILVS 187
[Close]
BLAST of mRNA_Ecto-sp13_S_contig59627.16524.1 vs. uniprot
Match: A0A6H5KBS4_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBS4_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 2.340e-20
Identity = 43/94 (45.74%), Postives = 63/94 (67.02%), Query Frame = 1 
Query:   55 LQAVCDAQYRIMAWTINCPGSENDRTAFNFSGFDKLLAGLPEGHFVVGDAAYGASERVVVPFPGTSLSASQDACNYYVSQCRMAIEQTYGILVS 336
            +QA+C A YR+ A +   PGS ND  A+  S   K +A LP G  ++GDAAY   E+++ P+PG  L A +D+ N+++SQ R+ IEQ++GILVS
Sbjct:  134 VQAMCTADYRLCAMSAISPGSTNDWVAWTRSSLAKAVARLPAGFHIIGDAAYPIGEKLLTPYPGRQLPAGEDSFNFHLSQLRVKIEQSFGILVS 227
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig59627.16524.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K540_9PHAE5.580e-5795.65DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5L6B6_9PHAE9.990e-5796.74DDE Tnp4 domain-containing protein n=3 Tax=Ectocar... [more]
A0A6H5KNF2_9PHAE2.280e-5693.48DDE Tnp4 domain-containing protein n=2 Tax=Ectocar... [more]
A0A6H5K6M2_9PHAE7.090e-3363.04DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KCG0_9PHAE3.200e-3259.78DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5K3F2_9PHAE1.300e-3161.96DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5J641_9PHAE2.380e-2451.09DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JJA1_9PHAE4.320e-2271.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQF5_9PHAE3.100e-2146.81DDE Tnp4 domain-containing protein (Fragment) n=1 ... [more]
A0A6H5KBS4_9PHAE2.340e-2045.74DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig59627contigEcto-sp13_S_contig59627:45..380 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeArthropoda
Stop0
Start1
Seed ortholog score72.0
Seed ortholog evalue2e-10
Seed eggNOG ortholog7159.AAEL018005-PB
Model size336
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.DDE superfamily endonuclease
EggNOG OGs39THK@33154,3BGF1@33208,3D09T@33213,3SIRQ@50557,41Z3Y@6656,453W1@7147,45JC4@7148,KOG4585@1,KOG4585@2759
Cds size336
COG Functional cat.L
Best tax levelNematocera
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463828.7008643-CDS-Ecto-sp13_S_contig59627:44..3801681463828.7008643-CDS-Ecto-sp13_S_contig59627:44..380Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig59627 45..380 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig59627.16524.1prot_Ecto-sp13_S_contig59627.16524.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig59627 45..380 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig59627.16524.1

>prot_Ecto-sp13_S_contig59627.16524.1 ID=prot_Ecto-sp13_S_contig59627.16524.1|Name=mRNA_Ecto-sp13_S_contig59627.16524.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=112bp
MVECYFTYIHAHAHVVLLLQAVCDAQYRIMAWTINCPGSENDRTAFNFSG
FDKLLAGLPEGHFVVGDAAYGASERVVVPFPGTSLSASQDACNYYVSQCR
MAIEQTYGILVS
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mRNA from alignment at Ecto-sp13_S_contig59627:45..380-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig59627.16524.1 ID=mRNA_Ecto-sp13_S_contig59627.16524.1|Name=mRNA_Ecto-sp13_S_contig59627.16524.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=336bp|location=Sequence derived from alignment at Ecto-sp13_S_contig59627:45..380- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTTGAGTGTTATTTCACATACATACATGCTCATGCACACGTTGTCCT
TCTACTTCAGGCGGTATGCGACGCCCAGTATCGCATCATGGCCTGGACGA
TAAATTGCCCAGGCAGCGAAAACGACCGCACCGCGTTCAACTTTTCGGGG
TTCGACAAGCTCTTGGCGGGCTTGCCCGAAGGCCACTTTGTCGTTGGCGA
CGCCGCCTATGGGGCTTCCGAGCGTGTCGTCGTCCCGTTCCCGGGGACGA
GCCTCTCCGCAAGCCAAGACGCGTGCAACTACTACGTGTCTCAGTGCCGG
ATGGCAATCGAGCAGACCTACGGCATTCTGGTGAGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig59627:45..380-

>mRNA_Ecto-sp13_S_contig59627.16524.1 ID=mRNA_Ecto-sp13_S_contig59627.16524.1|Name=mRNA_Ecto-sp13_S_contig59627.16524.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=336bp|location=Sequence derived from alignment at Ecto-sp13_S_contig59627:45..380- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTTGAGTGTTATTTCACATACATACATGCTCATGCACACGTTGTCCT
TCTACTTCAGGCGGTATGCGACGCCCAGTATCGCATCATGGCCTGGACGA
TAAATTGCCCAGGCAGCGAAAACGACCGCACCGCGTTCAACTTTTCGGGG
TTCGACAAGCTCTTGGCGGGCTTGCCCGAAGGCCACTTTGTCGTTGGCGA
CGCCGCCTATGGGGCTTCCGAGCGTGTCGTCGTCCCGTTCCCGGGGACGA
GCCTCTCCGCAAGCCAAGACGCGTGCAACTACTACGTGTCTCAGTGCCGG
ATGGCAATCGAGCAGACCTACGGCATTCTGGTGAGC
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