mRNA_Ecto-sp13_S_contig5946.16496.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5946.16496.1
Unique NamemRNA_Ecto-sp13_S_contig5946.16496.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig5946.16496.1 vs. uniprot
Match: D8LK32_ECTSI (USP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK32_ECTSI)

HSP 1 Score: 194 bits (493), Expect = 1.530e-61
Identity = 92/102 (90.20%), Postives = 96/102 (94.12%), Query Frame = 1
Query:   25 RSGGRFVERKLSHHVDVPKSIDMAPYTRPPASSAGDPQPQWYDLIGVVHHEGKTTKGGHYTAFVRLAGEEWRRYNDSKVTKVGYEDVLTENALILTYTRRSG 330
            RSGG FVERKLSHHVDVPKSID+APYTRPPASSAGDPQ + YDL GVVHHEG+TTK GHYTAFV LAGEEWRRY+DSKVTKVGYEDVLTENALILTYTRRSG
Sbjct:   72 RSGGTFVERKLSHHVDVPKSIDIAPYTRPPASSAGDPQSERYDLTGVVHHEGETTKTGHYTAFVHLAGEEWRRYDDSKVTKVGYEDVLTENALILTYTRRSG 173          
BLAST of mRNA_Ecto-sp13_S_contig5946.16496.1 vs. uniprot
Match: A0A6H5KT93_9PHAE (USP domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT93_9PHAE)

HSP 1 Score: 128 bits (321), Expect = 1.620e-33
Identity = 60/93 (64.52%), Postives = 70/93 (75.27%), Query Frame = 1
Query:   52 KLSHHVDVPKSIDMAPYTRPPASSAGDPQPQWYDLIGVVHHEGKTTKGGHYTAFVRLAGEEWRRYNDSKVTKVGYEDVLTENALILTYTRRSG 330
            KL+H V +PK +DMAPY  PP S AG  QP  YDL GVVHH G+TT  GHY AFVRL G+ WRRY+D+KVT+V     LT+NALIL+YTRRSG
Sbjct:  264 KLTHDVHIPKEMDMAPYIGPPTSRAGARQPDMYDLTGVVHHIGQTTNKGHYVAFVRLPGQWWRRYDDAKVTEVVASQALTKNALILSYTRRSG 356          
BLAST of mRNA_Ecto-sp13_S_contig5946.16496.1 vs. uniprot
Match: D7FYB9_ECTSI (USP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYB9_ECTSI)

HSP 1 Score: 126 bits (316), Expect = 2.020e-31
Identity = 62/93 (66.67%), Postives = 68/93 (73.12%), Query Frame = 1
Query:   52 KLSHHVDVPKSIDMAPYTRPPASSAGDPQPQWYDLIGVVHHEGKTTKGGHYTAFVRLAGEEWRRYNDSKVTKVGYEDVLTENALILTYTRRSG 330
            KL H V +PK IDMAPY  PP S AG  QP  YDL GVVHH G+TT  GHY AFVRL GE W RY+D+KVT V   DV T+NALIL+YTRRSG
Sbjct:  813 KLIHDVYIPKEIDMAPYIGPPTSRAGARQPDMYDLNGVVHHIGQTTNKGHYVAFVRLPGEGWLRYDDAKVTGVTDSDVRTQNALILSYTRRSG 905          
BLAST of mRNA_Ecto-sp13_S_contig5946.16496.1 vs. uniprot
Match: D7FSR8_ECTSI (Similar to deubiquitinating enzyme 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSR8_ECTSI)

HSP 1 Score: 126 bits (316), Expect = 2.070e-31
Identity = 61/93 (65.59%), Postives = 69/93 (74.19%), Query Frame = 1
Query:   52 KLSHHVDVPKSIDMAPYTRPPASSAGDPQPQWYDLIGVVHHEGKTTKGGHYTAFVRLAGEEWRRYNDSKVTKVGYEDVLTENALILTYTRRSG 330
            KL+H V +PK IDMAPY  PP + AG  QP  YDL GVVHH G+TT  GHY AFVRL GE W RY+D+KVT V   DV T+NALIL+YTRRSG
Sbjct: 1333 KLTHDVYIPKEIDMAPYIGPPTTRAGARQPDMYDLNGVVHHIGQTTNKGHYVAFVRLPGEGWLRYDDAKVTGVTDSDVRTQNALILSYTRRSG 1425          
BLAST of mRNA_Ecto-sp13_S_contig5946.16496.1 vs. uniprot
Match: A0A803PNG2_CANSA (Ubiquitin carboxyl-terminal hydrolase n=4 Tax=Cannabis sativa TaxID=3483 RepID=A0A803PNG2_CANSA)

HSP 1 Score: 84.3 bits (207), Expect = 1.020e-16
Identity = 45/108 (41.67%), Postives = 65/108 (60.19%), Query Frame = 1
Query:    1 ASFHVDGGRSGGRFVERKLSHHVDVPKSIDMAPYTRPPASSAGDPQPQWYDLIGVVHHEGKTTKGGHYTAFVRLAGEEWRRYNDSKVTKVGYEDVLTENALILTYTRR 324
            A FH+   ++ G +VE K+  HV+ P  +D+  YT     ++ D     YDL G+V H G ++  GHY +FVR A + W R +DSKVT+V  E VL+++A IL Y RR
Sbjct:  348 AVFHLKRFKNDGSYVE-KIDKHVNFPLELDLQSYT---TGASSDDDELMYDLYGIVVHVGLSSMFGHYFSFVRSAPDTWHRLDDSKVTRVEEEFVLSQDAYILFYARR 451          
BLAST of mRNA_Ecto-sp13_S_contig5946.16496.1 vs. uniprot
Match: W9RYX1_9ROSA (Ubiquitin carboxyl-terminal hydrolase n=2 Tax=Morus notabilis TaxID=981085 RepID=W9RYX1_9ROSA)

HSP 1 Score: 83.2 bits (204), Expect = 2.570e-16
Identity = 43/108 (39.81%), Postives = 66/108 (61.11%), Query Frame = 1
Query:    1 ASFHVDGGRSGGRFVERKLSHHVDVPKSIDMAPYTRPPASSAGDPQPQWYDLIGVVHHEGKTTKGGHYTAFVRLAGEEWRRYNDSKVTKVGYEDVLTENALILTYTRR 324
            A FH+   ++ G FVE K+  HVD    +D+  Y+    S++GD     YDL G++ H G ++  GHY +F+R + + W R +DS+VT+V  E VL++NA IL Y +R
Sbjct:  357 AVFHLKRFKADGSFVE-KIDKHVDFSLELDLQSYS---TSTSGDNAGLMYDLYGIIVHVGFSSASGHYFSFIRSSPDTWYRLDDSRVTRVREEYVLSQNAYILFYVKR 460          
BLAST of mRNA_Ecto-sp13_S_contig5946.16496.1 vs. uniprot
Match: A0A4P1QRH2_LUPAN (Ubiquitin carboxyl-terminal hydrolase n=3 Tax=Lupinus angustifolius TaxID=3871 RepID=A0A4P1QRH2_LUPAN)

HSP 1 Score: 83.2 bits (204), Expect = 2.570e-16
Identity = 44/107 (41.12%), Postives = 63/107 (58.88%), Query Frame = 1
Query:    1 ASFHVDGGRSGGRFVERKLSHHVDVPKSIDMAPYTRPPASSAGDPQPQWYDLIGVVHHEGKTTKGGHYTAFVRLAGEEWRRYNDSKVTKVGYEDVLTENALILTYTR 321
            A+FH+   ++ G FVE KL  HVD P  +D+ PY+    S+    +P  YDL  VV H G +   GHY  +VR A + W R +DS+VT+V  + VL++ A IL Y +
Sbjct:  332 AAFHLKRFKTDGTFVE-KLDKHVDFPLELDLQPYS---VSNQNSIEPMKYDLYAVVVHLGLSATSGHYYCYVRSAPDVWHRLDDSQVTRVSADYVLSQEAYILFYAQ 434          
BLAST of mRNA_Ecto-sp13_S_contig5946.16496.1 vs. uniprot
Match: A0A6P4D6U4_ARADU (Ubiquitin carboxyl-terminal hydrolase n=5 Tax=Arachis TaxID=3817 RepID=A0A6P4D6U4_ARADU)

HSP 1 Score: 83.2 bits (204), Expect = 2.590e-16
Identity = 45/108 (41.67%), Postives = 64/108 (59.26%), Query Frame = 1
Query:    1 ASFHVDGGRSGGRFVERKLSHHVDVPKSIDMAPYTRPPASSAGDPQPQWYDLIGVVHHEGKTTKGGHYTAFVRLAGEEWRRYNDSKVTKVGYEDVLTENALILTYTRR 324
            A+FH+   ++ G +VE K+  HV+ P  +D+ PYT    S   +  P  Y+L  VV H G ++  GHY +FVR A + W + +DSKVT V  E VL+E A IL Y R+
Sbjct:  346 ATFHLKRFKTDGTYVE-KIDKHVNFPLELDLQPYT---ISHQNNNVPLKYELYAVVVHIGFSSTSGHYFSFVRSAPDTWHKLDDSKVTMVSEESVLSEEAYILFYARQ 449          
BLAST of mRNA_Ecto-sp13_S_contig5946.16496.1 vs. uniprot
Match: A0A444WVV1_ARAHY (Ubiquitin carboxyl-terminal hydrolase n=3 Tax=Arachis hypogaea TaxID=3818 RepID=A0A444WVV1_ARAHY)

HSP 1 Score: 83.2 bits (204), Expect = 2.640e-16
Identity = 45/108 (41.67%), Postives = 64/108 (59.26%), Query Frame = 1
Query:    1 ASFHVDGGRSGGRFVERKLSHHVDVPKSIDMAPYTRPPASSAGDPQPQWYDLIGVVHHEGKTTKGGHYTAFVRLAGEEWRRYNDSKVTKVGYEDVLTENALILTYTRR 324
            A+FH+   ++ G +VE K+  HV+ P  +D+ PYT    S   +  P  Y+L  VV H G ++  GHY +FVR A + W + +DSKVT V  E VL+E A IL Y R+
Sbjct:  346 ATFHLKRFKTDGTYVE-KIDKHVNFPLELDLQPYT---ISHQNNNVPLKYELYAVVVHIGFSSTSGHYFSFVRSAPDTWHKLDDSKVTMVSEESVLSEEAYILFYARQ 449          
BLAST of mRNA_Ecto-sp13_S_contig5946.16496.1 vs. uniprot
Match: A0A8B8LZH5_ABRPR (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Abrus precatorius TaxID=3816 RepID=A0A8B8LZH5_ABRPR)

HSP 1 Score: 82.0 bits (201), Expect = 6.560e-16
Identity = 46/108 (42.59%), Postives = 64/108 (59.26%), Query Frame = 1
Query:    1 ASFHVDGGRSGGRFVERKLSHHVDVPKSIDMAPYTRPPASSAGDPQPQWYDLIGVVHHEGKTTKGGHYTAFVRLAGEEWRRYNDSKVTKVGYEDVLTENALILTYTRR 324
            A+FH+   ++ G  VE K+  HVD P  +D+ PYT    S+  +  P  YDL  VV H G ++  GHY  FVR A + W + +DSKVTKV  + VL++ A IL Y R+
Sbjct:  347 AAFHLKRFKTDGTRVE-KIDKHVDFPLELDLQPYT---FSNQNNDVPLKYDLFAVVVHIGFSSTSGHYFCFVRSAPDTWHKLDDSKVTKVLGDFVLSQEAYILFYARQ 450          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5946.16496.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LK32_ECTSI1.530e-6190.20USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KT93_9PHAE1.620e-3364.52USP domain-containing protein n=2 Tax=Ectocarpus s... [more]
D7FYB9_ECTSI2.020e-3166.67USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FSR8_ECTSI2.070e-3165.59Similar to deubiquitinating enzyme 3 n=1 Tax=Ectoc... [more]
A0A803PNG2_CANSA1.020e-1641.67Ubiquitin carboxyl-terminal hydrolase n=4 Tax=Cann... [more]
W9RYX1_9ROSA2.570e-1639.81Ubiquitin carboxyl-terminal hydrolase n=2 Tax=Moru... [more]
A0A4P1QRH2_LUPAN2.570e-1641.12Ubiquitin carboxyl-terminal hydrolase n=3 Tax=Lupi... [more]
A0A6P4D6U4_ARADU2.590e-1641.67Ubiquitin carboxyl-terminal hydrolase n=5 Tax=Arac... [more]
A0A444WVV1_ARAHY2.640e-1641.67Ubiquitin carboxyl-terminal hydrolase n=3 Tax=Arac... [more]
A0A8B8LZH5_ABRPR6.560e-1642.59Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Abru... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5946contigEcto-sp13_S_contig5946:272..763 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score193.0
Seed ortholog evalue7.6e-47
Seed eggNOG ortholog2880.D8LK32
Model size333
KEGG koko:K11855
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.ubiquitinyl hydrolase activity
EggNOG OGsKOG1865@1,KOG1865@2759
EC3.4.19.12
Cds size333
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463826.1544046-CDS-Ecto-sp13_S_contig5946:271..4011681463826.1544046-CDS-Ecto-sp13_S_contig5946:271..401Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5946 272..401 +
1681463826.170535-CDS-Ecto-sp13_S_contig5946:560..7631681463826.170535-CDS-Ecto-sp13_S_contig5946:560..763Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5946 561..763 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5946.16496.1prot_Ecto-sp13_S_contig5946.16496.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5946 272..763 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5946.16496.1

>prot_Ecto-sp13_S_contig5946.16496.1 ID=prot_Ecto-sp13_S_contig5946.16496.1|Name=mRNA_Ecto-sp13_S_contig5946.16496.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=111bp
ASFHVDGGRSGGRFVERKLSHHVDVPKSIDMAPYTRPPASSAGDPQPQWY
DLIGVVHHEGKTTKGGHYTAFVRLAGEEWRRYNDSKVTKVGYEDVLTENA
LILTYTRRSG*
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mRNA from alignment at Ecto-sp13_S_contig5946:272..763+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5946.16496.1 ID=mRNA_Ecto-sp13_S_contig5946.16496.1|Name=mRNA_Ecto-sp13_S_contig5946.16496.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=492bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5946:272..763+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCTTCTTTCCACGTCGACGGCGGTAGGTCCGGCGGTAGGTTCGTCGAGAG AAAACTCTCTCACCATGTCGACGTCCCCAAGTCGATCGACATGGCGCCCT ACACCCGCCCGCCTGCCAGCAGCGCCGGAGGTAAGATAACACCATGAAGA TATTCGGTGCAGCAAAAAGTGCCCCCCCCCTGAGGTGGCATTCCAAGTTT CTTCTCGGATCATGTCAACGAACATGTTTTGCATCCTCTCCTGGCCTCAA ACCTAATTTCCCTCACCGCCTTGTGCTTTTGATCCACAGACCCACAGCCC CAGTGGTACGACCTCATCGGCGTCGTTCACCACGAGGGCAAAACGACGAA GGGCGGGCACTACACTGCCTTCGTCCGCCTAGCTGGAGAGGAGTGGCGTC GATACAACGACAGCAAAGTCACCAAAGTCGGTTACGAAGACGTGTTGACC GAGAATGCCTTGATTCTCACCTACACTCGCCGATCAGGCTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5946:272..763+

>mRNA_Ecto-sp13_S_contig5946.16496.1 ID=mRNA_Ecto-sp13_S_contig5946.16496.1|Name=mRNA_Ecto-sp13_S_contig5946.16496.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=333bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5946:272..763+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCTTCTTTCCACGTCGACGGCGGTAGGTCCGGCGGTAGGTTCGTCGAGAG
AAAACTCTCTCACCATGTCGACGTCCCCAAGTCGATCGACATGGCGCCCT
ACACCCGCCCGCCTGCCAGCAGCGCCGGAGACCCACAGCCCCAGTGGTAC
GACCTCATCGGCGTCGTTCACCACGAGGGCAAAACGACGAAGGGCGGGCA
CTACACTGCCTTCGTCCGCCTAGCTGGAGAGGAGTGGCGTCGATACAACG
ACAGCAAAGTCACCAAAGTCGGTTACGAAGACGTGTTGACCGAGAATGCC
TTGATTCTCACCTACACTCGCCGATCAGGCTAG
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