mRNA_Ecto-sp13_S_contig5944.16493.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5944.16493.1
Unique NamemRNA_Ecto-sp13_S_contig5944.16493.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig5944.16493.1 vs. uniprot
Match: A0A6H5L2H2_9PHAE (Rab-GAP TBC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2H2_9PHAE)

HSP 1 Score: 542 bits (1396), Expect = 8.690e-189
Identity = 264/268 (98.51%), Postives = 265/268 (98.88%), Query Frame = 1
Query:    1 VKTDRYGFFVTSERRRLDVPMEILRVRWSKEGRRAQKWRTMIDDFDSWRMGKKATRFRNRVRKGVPDCVRGKVWQMLMGSTAMMEREPNKYADLVASDLPVEGPIEEDIPRTMYDHELFCHKSRVNGRDMLRRVLTAYGRYDREVQYCQGINYITSLFLLYMPEENAFWMLVASMNRPCAPLRELFLPGMLKKAQEFQFVMDSLTKKHCEKLSNQILAHNLTPAMYATQWFLTAFTQRFPYDLVTRVWDMFLLEDWKVFYRVCLALFK 804
            VKTDRYGFFVTSERRRLDVPMEILRVRWSKEGRRAQKWR MID+FDSWRMGKKATRFRNRVRKGVPDCVRGKVWQMLMGSTAMMEREPNKYADLVASDLPVEGPIEEDIPRTMYDHELFC KSRVNGRDMLRRVLTAYGRYDREVQYCQGINYITSLFLLYMPEENAFWMLVASMNRPCAPLRELFLPGMLK AQEFQFVMDSLTKKHCEKLSNQILAHNLTPAMYATQWFLTAFTQRFPYDLVTRVWDMFLLEDWKVFYRVCLALFK
Sbjct:  334 VKTDRYGFFVTSERRRLDVPMEILRVRWSKEGRRAQKWRKMIDNFDSWRMGKKATRFRNRVRKGVPDCVRGKVWQMLMGSTAMMEREPNKYADLVASDLPVEGPIEEDIPRTMYDHELFCRKSRVNGRDMLRRVLTAYGRYDREVQYCQGINYITSLFLLYMPEENAFWMLVASMNRPCAPLRELFLPGMLK-AQEFQFVMDSLTKKHCEKLSNQILAHNLTPAMYATQWFLTAFTQRFPYDLVTRVWDMFLLEDWKVFYRVCLALFK 600          
BLAST of mRNA_Ecto-sp13_S_contig5944.16493.1 vs. uniprot
Match: D7G5V3_ECTSI (GTPase activating protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5V3_ECTSI)

HSP 1 Score: 498 bits (1282), Expect = 6.230e-177
Identity = 241/248 (97.18%), Postives = 244/248 (98.39%), Query Frame = 1
Query:   61 MEILRVRWSKEGRRAQKWRTMIDDFDSWRMGKKATRFRNRVRKGVPDCVRGKVWQMLMGSTAMMEREPNKYADLVASDLPVEGPIEEDIPRTMYDHELFCHKSRVNGRDMLRRVLTAYGRYDREVQYCQGINYITSLFLLYMPEENAFWMLVASMNRPCAPLRELFLPGMLKKAQEFQFVMDSLTKKHCEKLSNQILAHNLTPAMYATQWFLTAFTQRFPYDLVTRVWDMFLLEDWKVFYRVCLALFK 804
            MEILRVRWSKE RRAQKWRTMID+FDSWRMGKKATRFRNRVRKGVPDCVR KVWQMLMGSTAMMEREPNKYADLVASDLPVEGPIEEDIPRTMYDHELFC KSRVNGRDMLRRVLTAYGRYDREVQYCQG+NYITSLFLLYMPEENAFWMLVA+MNRPCAPLRELFLPGMLK AQEFQFVMDSLTKKHCEKLSNQILAHNLTPAMYATQWFLTAFTQRFPYDLVTRVWDMFLLEDWKVFYRVCLALFK
Sbjct:    1 MEILRVRWSKEDRRAQKWRTMIDNFDSWRMGKKATRFRNRVRKGVPDCVRAKVWQMLMGSTAMMEREPNKYADLVASDLPVEGPIEEDIPRTMYDHELFCRKSRVNGRDMLRRVLTAYGRYDREVQYCQGVNYITSLFLLYMPEENAFWMLVATMNRPCAPLRELFLPGMLK-AQEFQFVMDSLTKKHCEKLSNQILAHNLTPAMYATQWFLTAFTQRFPYDLVTRVWDMFLLEDWKVFYRVCLALFK 247          
BLAST of mRNA_Ecto-sp13_S_contig5944.16493.1 vs. uniprot
Match: A0A835YV67_9STRA (Rab-GTPase-TBC domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV67_9STRA)

HSP 1 Score: 303 bits (776), Expect = 1.400e-95
Identity = 163/297 (54.88%), Postives = 193/297 (64.98%), Query Frame = 1
Query:    4 KTDRYGFFVTSERRRLDVPMEILRVRWSKEGRRAQKWRTMIDDFDSW---RMGKKATRFRNRVRKGVPDCVRGKVWQMLMGSTAMMEREPNKYADLVASDLPVEGPIEEDIPRTMYDHELFCHKSRVNGRDMLRRVLTAYGRYDREVQYCQ---------------------------GINYITSLFLLYMPEENAFWMLVASMNRPCAPLRELFLPGMLKKAQEFQFVMDSLTKKHCEKLSNQILAHNLTPAMYATQWFLTAFTQRFPYDLVTRVWDMFLLEDWKVFYRVCLALFK 804
            KTD +GFF+TS+R              SKE  RA+KW  M   +D+    R G++A   + R RKG+PD VRG+VWQ+L GS A M      Y  LVASDL V+GPIEEDIPRTM+DHE+FC +S ++G   LRRVL AYGR+DREVQYCQ                           GINYI +LFLLYMPEE AFWMLV  M+RP APLRELFLPGMLK A+EF  VMDSLT+K   KL   +  H++ P MYA  WF+T FTQ FPY+L TR WD+FL EDWK+ YRVCLALFK
Sbjct:  290 KTDHFGFFLTSDRAAPVAQGAAATAALSKEESRARKWLEMRRQWDTVAARRHGQRA--LKRRARKGIPDTVRGEVWQLLSGSKARMAASAGVYEGLVASDLKVDGPIEEDIPRTMFDHEMFCKQSHMHGHSKLRRVLLAYGRHDREVQYCQWQPLLYYFKNFKKYNLSKLHKRQVAQTGINYIAALFLLYMPEEEAFWMLVCVMHRPQAPLRELFLPGMLK-AREFNHVMDSLTEKFVPKLFRHLQKHDIQPTMYAHPWFITCFTQAFPYELCTRTWDVFLEEDWKIMYRVCLALFK 583          
BLAST of mRNA_Ecto-sp13_S_contig5944.16493.1 vs. uniprot
Match: A0A835Z8H8_9STRA (Rab-GTPase-TBC domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8H8_9STRA)

HSP 1 Score: 249 bits (635), Expect = 1.350e-74
Identity = 139/295 (47.12%), Postives = 179/295 (60.68%), Query Frame = 1
Query:    4 KTDRYGFFVTSERR---RLDVPMEILRVRWSKEGRRAQKWRTMIDDFDSWRMGKKATR--FRNRVRKGVPDCVRGKVWQMLMGSTAMMEREPNKYADLVASDLPVEGPIEEDIPRTMYDHELFCHKSRVNGRDMLRRVLTAYGRYDREVQYCQGINYITSLFLLYMPEENAFWML----------------------VASMNRPCAPLRELFLPGMLKKAQ-EFQFVMDSLTKKHCEKLSNQILAHNLTPAMYATQWFLTAFTQRFPYDLVTRVWDMFLLEDWKVFYRVCLALFK 804
            KTDRYG FVTSER    R+  P + ++    K+  R+ KW TM + +D+  +GKK      + R RKG+PD VRG++WQ+L GS  +M   P  Y  LVAS + V+GPIEEDIPRTM+DHE+FC+ S   G   LRRVL A+GR DRE     GINYI +LFLLYM EE AFW+L                      +    +    L  L + G++   +  F +VMD L  K   +L N + ++++ P MYA  WF+T FTQ FPYDLVTRVWD+FL EDWK+ YRVCLALFK
Sbjct:  315 KTDRYGIFVTSERAASPRVGAPAQAVKA---KDDERSHKWLTMREHWDAL-VGKKGGEKLLKKRARKGIPDTVRGEMWQLLCGSKTLMAAHPGVYDALVASHVQVDGPIEEDIPRTMFDHEMFCNHSHFEGHGKLRRVLLAFGRRDRE-----GINYIAALFLLYMTEEEAFWLLQKDEAGHQQLVEGQQPEKVEEGMDDQEKQQENLYRLLVTGLVFLLRFVFHYVMDGLALKFTPRLHNHLKSNDIDPTMYAHPWFMTCFTQSFPYDLVTRVWDIFLKEDWKIMYRVCLALFK 600          
BLAST of mRNA_Ecto-sp13_S_contig5944.16493.1 vs. uniprot
Match: A0A6G0XPR2_9STRA (Rab-GAP TBC domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XPR2_9STRA)

HSP 1 Score: 209 bits (532), Expect = 3.270e-62
Identity = 118/276 (42.75%), Postives = 161/276 (58.33%), Query Frame = 1
Query:   10 DRYGFFVTSER-----RRLDVPMEILRVRWSKEGRRAQKWRTM-----IDDFDSWRMGKKATRFRNRVRKGVPDCVRGKVWQMLMGSTAMMEREPNKYADLVAS-DLPVEGPIEEDIPRTMYDHELFCHKSRVNGRDMLRRVLTAYGRYDREVQYCQGINYITSLFLLYMPEENAFWMLVASMNRPCAPLRELFLPGMLKKAQEFQFVMDSLTKKHCEKLSNQILAHNLTPAMYATQWFLTAFTQRFPYDLVTRVWDMFLLEDWKVFYRVCLALFK 804
            DRYGF V+ +R     R++  P E  +     E RR QKW +M     I+D++  +  K+  + ++RVRKG+PD +RG  W  L GS+ MM+  P  Y DLVA+  +P E  I  DI RT   H LF   + + G+  L  VL AY  YD  V YCQG+ +I++LFL YMPEE  FW LVA +N     + +++ PGM  +  E   + D   K +  KL+  + A  L P MYATQWF+T F   FP+D VTRVWD+FL E WK+ +RV +AL K
Sbjct:   47 DRYGFLVSDKRYSPQARQVKSPSETPKDSVWLENRRTQKWMSMTGGISIEDWERTKQ-KQPAKLKSRVRKGIPDAIRGIAWPHLAGSSLMMKNNPGMYRDLVATTQVPCEDTILRDIGRTFPKHHLFKDSTSI-GQSALLNVLKAYSVYDPNVGYCQGMGFISALFLSYMPEEQTFWHLVACLNHKKYGMADIYRPGM-PRVVEIMAIFDQCLKIYVPKLAEHLDAEGLHPTMYATQWFVTIFAYSFPFDFVTRVWDIFLHEGWKIVFRVTVALLK 319          
BLAST of mRNA_Ecto-sp13_S_contig5944.16493.1 vs. uniprot
Match: D0MU62_PHYIT (Rab-GAP TBC domain-containing protein n=10 Tax=Phytophthora TaxID=4783 RepID=D0MU62_PHYIT)

HSP 1 Score: 203 bits (516), Expect = 6.880e-60
Identity = 117/270 (43.33%), Postives = 156/270 (57.78%), Query Frame = 1
Query:   10 DRYGFFVTSERRRLDVPMEILRVRWSKEGRRAQKWRTMI----DDFDSWRMGKKATRFRNRVRKGVPDCVRGKVWQMLMGSTAMMEREPNKYADLV-ASDLPVEGPIEEDIPRTMYDHELFCHKSRVNGRDMLRRVLTAYGRYDREVQYCQGINYITSLFLLYMPEENAFWMLVASMNRPCAPLRELFLPGMLKKAQEFQFVMDSLTKKHCEKLSNQILAHNLTPAMYATQWFLTAFTQRFPYDLVTRVWDMFLLEDWKVFYRVCLALFK 804
            DRYGF VT +R          +     E RR QKW  MI    +D++  ++   AT  + R+RKG+P+ +RG+VW  L GS+ M+   P  Y  L+  + +P E  I  DI RT   H LF  +S + G+  L  VL AY  +D EV YCQG+ ++T++FL YMPE+ AFW+LVA +N     L +L+ P M  K  E  F+ + L K+   +LS  +    L P MY TQWFLT FT  FP++ VTRVWD FL E WKV YRV LAL K
Sbjct:   58 DRYGFLVTDKRYNGGHTAATHKHAVWLENRRTQKWVKMIGKQLEDWEVCQLRNAAT-LKKRIRKGIPEALRGRVWSHLAGSSQMLLNNPGAYHQLLQTTQVPCEETIARDIGRTFPKHSLFRDRSSL-GQCALMNVLKAYSLHDPEVGYCQGMGFLTAMFLCYMPEQQAFWLLVACLNHKRYGLADLYRPRM-PKVPEVTFIFEGLFKQLMPQLSAHLENEGLHPTMYLTQWFLTLFTYNFPFEFVTRVWDAFLHEGWKVIYRVALALMK 324          
BLAST of mRNA_Ecto-sp13_S_contig5944.16493.1 vs. uniprot
Match: A0A225W6Z9_9STRA (Rab-GAP TBC domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225W6Z9_9STRA)

HSP 1 Score: 202 bits (514), Expect = 1.080e-59
Identity = 118/272 (43.38%), Postives = 158/272 (58.09%), Query Frame = 1
Query:   10 DRYGFFVTSERRRLD--VPMEILRVRWSKEGRRAQKWRTMI----DDFDSWRMGKKATRFRNRVRKGVPDCVRGKVWQMLMGSTAMMEREPNKYADLV-ASDLPVEGPIEEDIPRTMYDHELFCHKSRVNGRDMLRRVLTAYGRYDREVQYCQGINYITSLFLLYMPEENAFWMLVASMNRPCAPLRELFLPGMLKKAQEFQFVMDSLTKKHCEKLSNQILAHNLTPAMYATQWFLTAFTQRFPYDLVTRVWDMFLLEDWKVFYRVCLALFK 804
            DRYGF VT +R               W  E RR QKW  MI    +D++  ++   AT  + R+RKG+P+ +RG+VW  L GS+ M+   P  Y  L+  + +P E  I  DI RT   H LF  +S + G+  L  VL AY  +D EV YCQG+ +++++FL YMPE+ AFW+LVA +N     L +L+ P M  K  E  FV + L K++  +LS  + +  L P MY TQWFLT FT  FP++ VTRVWD FL E WKV YRV LAL K
Sbjct:   53 DRYGFLVTDKRYNAGHAATNTYKHAVWL-ENRRTQKWVKMIGKQLEDWEVCQLRHAAT-LKKRIRKGIPEALRGRVWSHLAGSSQMLLNNPGAYHQLLQTARVPCEETIARDIGRTFPRHSLFRDRSSL-GQCALMNVLKAYSLHDPEVGYCQGMGFLSAMFLCYMPEQQAFWLLVACLNHKRYGLADLYRPRM-PKVPEVTFVFEGLFKQYMPQLSAHLESEGLHPTMYLTQWFLTLFTYNFPFEFVTRVWDAFLHEGWKVIYRVALALLK 320          
BLAST of mRNA_Ecto-sp13_S_contig5944.16493.1 vs. uniprot
Match: A0A0P1B616_PLAHL (Plant adhesion molecule 1 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B616_PLAHL)

HSP 1 Score: 201 bits (512), Expect = 2.260e-59
Identity = 118/269 (43.87%), Postives = 152/269 (56.51%), Query Frame = 1
Query:   10 DRYGFFVTSERRRLDVPMEILRVRWSKEGRRAQKWRTMID-DFDSWRMGK--KATRFRNRVRKGVPDCVRGKVWQMLMGSTAMMEREPNKYADLVAS-DLPVEGPIEEDIPRTMYDHELFCHKSRVNGRDMLRRVLTAYGRYDREVQYCQGINYITSLFLLYMPEENAFWMLVASMNRPCAPLRELFLPGMLKKAQEFQFVMDSLTKKHCEKLSNQILAHNLTPAMYATQWFLTAFTQRFPYDLVTRVWDMFLLEDWKVFYRVCLALFK 804
            DRYGF VT +R        I +     E RR QKW  MI    + W + +   A   + R+RKG+P+ +RG+VW  L GS+ M+      Y  LV +  +P E  I  DI RT   H LF  +S + G+  L  +L AY  +D EV YCQG+ +I+++FL YMPE+ AFW+LVA +N     L +L+ P M  K  E  +V   L K+    LS  +    L P MY TQWFLT FT  FP+DLVTRVWD FL E WKV YRV LAL K
Sbjct:   43 DRYGFLVTDKR--FHDSHHIYKHAVWLENRRTQKWLKMIGKQLEDWEICRFRHAAILKKRIRKGIPEALRGRVWSYLAGSSQMLSNNSGIYHQLVQTIGVPCEETIARDIGRTFPKHTLFRDRSSL-GQCALMNMLKAYSLHDPEVGYCQGMGFISAMFLCYMPEQQAFWLLVACLNHKRYGLADLYRPRM-PKVLEVTYVFQGLLKQQMPHLSTHLENEGLHPTMYLTQWFLTLFTYNFPFDLVTRVWDAFLHEGWKVIYRVALALMK 307          
BLAST of mRNA_Ecto-sp13_S_contig5944.16493.1 vs. uniprot
Match: H3GE06_PHYRM (Rab-GAP TBC domain-containing protein n=6 Tax=Phytophthora TaxID=4783 RepID=H3GE06_PHYRM)

HSP 1 Score: 201 bits (510), Expect = 3.840e-59
Identity = 119/272 (43.75%), Postives = 156/272 (57.35%), Query Frame = 1
Query:   10 DRYGFFVTSERRR--LDVPMEILRVRWSKEGRRAQKWRTMI----DDFDSWRMGKKATRFRNRVRKGVPDCVRGKVWQMLMGSTAMMEREPNKYADLV-ASDLPVEGPIEEDIPRTMYDHELFCHKSRVNGRDMLRRVLTAYGRYDREVQYCQGINYITSLFLLYMPEENAFWMLVASMNRPCAPLRELFLPGMLKKAQEFQFVMDSLTKKHCEKLSNQILAHNLTPAMYATQWFLTAFTQRFPYDLVTRVWDMFLLEDWKVFYRVCLALFK 804
            DRYGF VT +R               W  E RR QKW  MI    +D++  ++   AT  + R+RKG+P+ +RG+VW  L GST M+   P  Y  L+  + +P E  I  DI RT   H LF  +S + G+  L  VL AY  +D EV YCQG+ +++++FL YMPE+ AFW+LVA +N     L +L+ P M  K  E  FV  +L K+   +LS  +    L P MY TQWFLT FT  FP++ VTRVWD FL E WKV YRV LAL K
Sbjct:   53 DRYGFLVTDKRYNGGHTATNTYKHAVWL-ENRRTQKWVKMIGKQLEDWEVCQLRHAAT-LKKRIRKGIPEALRGRVWSHLAGSTQMLLNNPGAYHQLLQTAQVPCEETIARDIGRTFPRHSLFRDRSSL-GQCALMNVLKAYSLHDPEVGYCQGMGFLSAMFLCYMPEQQAFWLLVACLNHKRYGLADLYRPRM-PKVPEVTFVFQALLKQLMPQLSAHLENEGLHPTMYLTQWFLTLFTYNFPFEFVTRVWDSFLHEGWKVIYRVALALLK 320          
BLAST of mRNA_Ecto-sp13_S_contig5944.16493.1 vs. uniprot
Match: A0A485LF29_9STRA (Aste57867_20420 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LF29_9STRA)

HSP 1 Score: 207 bits (527), Expect = 4.040e-59
Identity = 116/279 (41.58%), Postives = 161/279 (57.71%), Query Frame = 1
Query:   10 DRYGFFVTSERRRLDVPMEILRVRWSK--------EGRRAQKWRTM-----IDDFDSWRMGKKATRFRNRVRKGVPDCVRGKVWQMLMGSTAMMEREPNKYADLVASDLP-VEGPIEEDIPRTMYDHELFCHKSRVNGRDMLRRVLTAYGRYDREVQYCQGINYITSLFLLYMPEENAFWMLVASMNRPCAPLRELFLPGMLKKAQEFQFVMDSLTKKHCEKLSNQILAHNLTPAMYATQWFLTAFTQRFPYDLVTRVWDMFLLEDWKVFYRVCLALFK 804
            DRYGF +T +R      +E     +          E RR QKW  M     I+D++  +  K+A + ++RVRKG+PD +RG  W  L GS+ MM+  P  Y DL+A+  P  E  I  DI RT   H LF   S + G+  L  VL AY  YD  V YCQG+ +I++LFL YMPEE  FW LVA +N+    + +++ PGM  +A E   + +  TK +  KL+  + A  L P MYATQWF+T ++  FP++ VTRVWD+FL E WK+ YR+ +AL K
Sbjct:  292 DRYGFLLTDKRFSPRTKVEATPHAYDHKSTDAIWLENRRTQKWMAMTGGVTIEDWERTKQ-KQAAKLKSRVRKGIPDAIRGIAWPHLAGSSTMMKNNPGMYQDLLATPHPPCEETISRDIGRTFPKHHLFKDSSSL-GQGALMNVLKAYSVYDPNVGYCQGMGFISALFLSYMPEEQTFWHLVACLNQKKYGMADIYRPGM-PRAAEIMSIFEQCTKTYLPKLTEHMDAEGLHPTMYATQWFITLYSYSFPFEFVTRVWDIFLHEGWKIVYRIAIALLK 567          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5944.16493.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L2H2_9PHAE8.690e-18998.51Rab-GAP TBC domain-containing protein n=1 Tax=Ecto... [more]
D7G5V3_ECTSI6.230e-17797.18GTPase activating protein n=1 Tax=Ectocarpus silic... [more]
A0A835YV67_9STRA1.400e-9554.88Rab-GTPase-TBC domain-containing protein n=1 Tax=T... [more]
A0A835Z8H8_9STRA1.350e-7447.12Rab-GTPase-TBC domain-containing protein n=1 Tax=T... [more]
A0A6G0XPR2_9STRA3.270e-6242.75Rab-GAP TBC domain-containing protein n=1 Tax=Apha... [more]
D0MU62_PHYIT6.880e-6043.33Rab-GAP TBC domain-containing protein n=10 Tax=Phy... [more]
A0A225W6Z9_9STRA1.080e-5943.38Rab-GAP TBC domain-containing protein n=1 Tax=Phyt... [more]
A0A0P1B616_PLAHL2.260e-5943.87Plant adhesion molecule 1 n=1 Tax=Plasmopara halst... [more]
H3GE06_PHYRM3.840e-5943.75Rab-GAP TBC domain-containing protein n=6 Tax=Phyt... [more]
A0A485LF29_9STRA4.040e-5941.58Aste57867_20420 protein n=1 Tax=Aphanomyces stella... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5944contigEcto-sp13_S_contig5944:458..4290 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score498.8
Seed ortholog evalue1.6e-138
Seed eggNOG ortholog2880.D7G5V3
Model size807
KEGG koko:K19944,ko:K20133
Hectar predicted targeting categoryother localisation
Exons5
EggNOG free text desc.regulation of vesicle fusion
EggNOG OGsCOG5210@1,KOG1102@2759
Ec32 ortholog descriptionGTPase activating protein
Ec32 orthologEc-13_001710.1
Cds size807
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463825.9835958-CDS-Ecto-sp13_S_contig5944:457..5231681463825.9835958-CDS-Ecto-sp13_S_contig5944:457..523Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5944 458..523 +
1681463825.9956675-CDS-Ecto-sp13_S_contig5944:1924..21011681463825.9956675-CDS-Ecto-sp13_S_contig5944:1924..2101Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5944 1925..2101 +
1681463826.005786-CDS-Ecto-sp13_S_contig5944:2346..25351681463826.005786-CDS-Ecto-sp13_S_contig5944:2346..2535Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5944 2347..2535 +
1681463826.014298-CDS-Ecto-sp13_S_contig5944:2923..30671681463826.014298-CDS-Ecto-sp13_S_contig5944:2923..3067Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5944 2924..3067 +
1681463826.0289853-CDS-Ecto-sp13_S_contig5944:4059..42901681463826.0289853-CDS-Ecto-sp13_S_contig5944:4059..4290Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5944 4060..4290 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5944.16493.1prot_Ecto-sp13_S_contig5944.16493.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5944 458..4290 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5944.16493.1

>prot_Ecto-sp13_S_contig5944.16493.1 ID=prot_Ecto-sp13_S_contig5944.16493.1|Name=mRNA_Ecto-sp13_S_contig5944.16493.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=269bp
VKTDRYGFFVTSERRRLDVPMEILRVRWSKEGRRAQKWRTMIDDFDSWRM
GKKATRFRNRVRKGVPDCVRGKVWQMLMGSTAMMEREPNKYADLVASDLP
VEGPIEEDIPRTMYDHELFCHKSRVNGRDMLRRVLTAYGRYDREVQYCQG
INYITSLFLLYMPEENAFWMLVASMNRPCAPLRELFLPGMLKKAQEFQFV
MDSLTKKHCEKLSNQILAHNLTPAMYATQWFLTAFTQRFPYDLVTRVWDM
FLLEDWKVFYRVCLALFK*
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mRNA from alignment at Ecto-sp13_S_contig5944:458..4290+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5944.16493.1 ID=mRNA_Ecto-sp13_S_contig5944.16493.1|Name=mRNA_Ecto-sp13_S_contig5944.16493.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3833bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5944:458..4290+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTCAAAACTGACCGCTATGGGTTTTTCGTCACGAGTGAGCGGCGGAGGCT GGATGTTCCGATGGAGGTGAGGATCGGCCGCGTGTTGTATGCATGTGAAG AGAGCACTCCCGCGGCACTTTTGCCCTTGTGGGCTATACGGTAGGGACGT CCCTCAGTACGAATCAGTCCTCTGGCGTATGGTAATTTTGACGTTTGGGT TGAATGCCTTGAGGTACAAGCACATTGCCTTGTAGATGTTCATTGCATGC AATTTGCCCACAGTGCATGCTTTGGCATCCACGTCGAGAGATGCTCATAT GTAGCTCGAAAAGAGAAGAAAACTCAGTAAGTGTTGCGAGCCGTCAAGAT GGAAAAATGATCGAGACAACCAAATCAAGCGAACCAGTCCTTGCTCACCG CGTCAATTGAATCACATAAGGGGGAAAACATACATGGTACTACACCTGCC CGTACGGGCGGCGACTGCCAGCAAAAAAACCTGTGCCCTTGGTACTGTTA TGGCACATGAATCTCAACGTTCCTGCGCTCAAACGTTGTGCTGGTGGTGC TGCTGCTGCTGCTTCTGCCAAAGAGATGTACGTCCGACGACAGCACAAAT GTTACGTCGCATCTTTACCAGTATCATGTCCGTCTTCACCAACGTTTCTG CCAGGATGTAGAGAAGACACACCAGCGGGCATTGTGCCCAAACAGAGAAA CCCTGGATCTGCCGTACGTTTTTTTTTTCGCTGAGGTTGTTTTTCAAGGA AACGAGATCGAACCAAATATCGATGTTTTGTTCATTTTGCGTTTTTGGTC TCGTGTTGTCTTCGGCTTTTCGATGACGATATGCTTCACACCCAACCTGC TTTATTGCCTGCTTGTTTGGTGAGTAAACTGACACCAACAGCAAGATGGC ATACAACACTGGTGCAGTACTTCGCGTGTGCGCGCGCGCACTCTGAATAT GTACTTCCTCTCCTCTATCCCGGCAGCGGCATCTGCGAGCTAAACAATGA ATACAGCCAGCTCAGTTGCCAGTCGTCCAAGTCGACGAAAGAGGCCCGCT TTTCTCTTTTTGTAAACGCATCACATGCCTTCATCCTTCCAATTTGCAGT CGTCCTATTTACGTGGATGTGCCAACAATACATCCAGTCGGCATCGGGAA AGCCGGCGTGGCACGAGAACGTCTCACTCTTGCTCGTGGTCTGCTGTTGT GTCGCCATTCTCACACACACAAGTGAACACTTGTTGGTTGGTTCTCTAGC TGAACTTCTTAACGCTTATTCCAGGTCGGAAAGAACCCCAAACAGGGCCA ACAAACAGTACAAGAGTCCCACTGGACGACTGAGTAGCTGTGTCCTGCGG GTGTACTCATGCACTGTACGGAGCTGGTATACTTAATCGTGGTTCGCGTC TAGAGTGTGGTAAGGTAGTGTTCCGCATGTCGTCTCAGTTCCGTCCGTCT CGGTCGCTTCATCCCAGATTCTCAGGGTAAGGTGGTCGAAGGAGGGCAGG CGAGCTCAAAAGTGGCGGACGATGATCGACGATTTTGACAGTTGGAGGAT GGGGAAGAAGGCCACACGATTCCGAAACAGAGTGCGCAAGGGTGTGCCAG ACTGCGTTCGGGGCAAAGTTTGGCAGATGCTGATGGGATCCACGGTGAGG ATTCATGTGCATACGCACATGTTGCGGCGCTCGGCCTTGCGATGGAACGT TTTAACTTGTAGTAACTTGTGGTGGCGCGTGTCTATTTTACTTTATTCTG TCCTACCTCCCTTGCGGTTAACTAACGGTGGTGACATTGATGTTTTTCCA ATACGAAACCGCCATGCAGAACACGGAAGAATCCGTGATTGTAAGCACAT CGGACCACTTTTCTACCTTGTGTTTACTTTCCACGCAAGGCTATGATGGA AAGGGAGCCGAACAAGTACGCAGACCTGGTGGCGAGTGATCTCCCGGTAG AAGGCCCCATCGAAGAAGACATACCTCGCACAATGTACGACCATGAGCTA TTCTGCCACAAGTCGCGAGTCAACGGGAGAGATATGCTGCGGAGAGTCTT GACGGCGTATGGGCGCTATGATAGAGAGGTAATTGGAGTGGGCTCGGTCT GAGCTTTCTAGAACAAAAGCACCGGCATATTCGTAATTCTTTGGGCTCAG AAATCGGAAATAGGCGCTTAACGACGAACCTCCTGTCTGTCCCCGAGAAC GAAGTATGAGATAACGTTCGCTACCACGAAAAGAAGTTGTGCCGAAGCAT GACTACTCCAATAGGTGTTAACAGTTTTGACCACCTGCGGACACAACGGC AACTACTCGATAGGCGCAATAAACGTTGCACGCGATGAGCCAGTGAGCCC ACAGGTCGCTTTGATCGGCGCAGTCGTGCTCCCCACATAGCAGGAATGTG AATACTCGGATCATGATCCATTTTTCCCCTTTTTTGGCGTTCGTCACATG CACTCATCAACCCCAGGTGCAATATTGCCAGGGCATCAACTACATAACGT CCTTGTTTCTGCTCTATATGCCGGAGGAGAACGCATTCTGGATGCTGGTC GCTTCCATGAACCGCCCGTGCGCACCATTAAGGGAGCTGTTTCTTCCGGG GATGTTGAAGGTACTGTTAATTCTGTTCCATTGCCGAAGCACAGGGTGTT TCGCAACGCGATGTGTTGTAACACCCATACTAGGATGCTCAGGTCGACGA ATACGCCACGAGAACCAATCTTTGGCCGATTTTGACATCGACCGTTTAAT CTTTTCCTGCAGCGCTCGTCGCCACAGATCCAATCTCCTGACTTGCGGGT CGATAGCTCATACTTGTAAACACCCGCTTTGGACATTTCAACGGATTGAG ACTCGTGATTGCGATCAAACGGTGGTATGCATCCAGATTCGAGGGGTAAC TTAACTGCACCCTGCTGTGTGCCGGCCCCAGCAACAGACCTGAGCACGTG AACGCGCACGACGCCACTGCACGATGTGTTCCGTTCAACAACTTTTTGGG TCGGGACTCCGACAGCTGGGAGATGGATTGAGAATGTTGACAATTTTAAG TGGTGCAGTCTAGAATCTATTTACGGCTGGTGTCTCCAATCCTTTCAGTG TGAGTTTTACCCTTGGTTGGCACATTTTTTTTTAACGGTTAAGGTAAACA AGTATAATGATACAAGGCTGGCCTCCCGGGGACAACGAAAAAAAGACACG GACGGTGTCATCATGGATTGTCGTGTCTCAACCCGTAACGTCGGTAGTGC TGGTTTCCGTAGAACTGCAAACTATGGCGTCCTACCACGTGCGGTGCGCG GACATATCTTTTTGATCGCTGTGGTTCTTCGCGTGTGTGTTGCTGTTCTG GCGTTTATCCCGCAGATCCTACTGCTATAACCTGCTCCTTTTGGCCTCTA TCTCCCCATGTGTTTTTATCGTCGTTGCTCATGGTGTGTGTGCACGTATA TATTGTGTAGAAATTCAAACTCTTCCTGTTTACGTTCAGGCATGTATCAA GCCGTAGCGAACTAGTGTTCGTTGACACTTCGATGTTTTTTGTATCACCT GACCTTTTTTATCCCGCTACCTCACGTAACCGTTCTTGCACGTGCTCTGG AGAAGGCCCAAGAATTCCAGTTTGTGATGGACTCGCTCACGAAGAAGCAC TGCGAGAAGCTCTCAAATCAGATCCTGGCACATAACCTCACTCCTGCCAT GTACGCGACCCAGTGGTTCCTGACCGCATTCACCCAGCGTTTCCCGTACG ACTTGGTGACCCGCGTGTGGGACATGTTCCTCCTGGAGGACTGGAAAGTG TTCTACAGGGTGTGTCTGGCATTATTCAAGTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5944:458..4290+

>mRNA_Ecto-sp13_S_contig5944.16493.1 ID=mRNA_Ecto-sp13_S_contig5944.16493.1|Name=mRNA_Ecto-sp13_S_contig5944.16493.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=807bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5944:458..4290+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTCAAAACTGACCGCTATGGGTTTTTCGTCACGAGTGAGCGGCGGAGGCT
GGATGTTCCGATGGAGATTCTCAGGGTAAGGTGGTCGAAGGAGGGCAGGC
GAGCTCAAAAGTGGCGGACGATGATCGACGATTTTGACAGTTGGAGGATG
GGGAAGAAGGCCACACGATTCCGAAACAGAGTGCGCAAGGGTGTGCCAGA
CTGCGTTCGGGGCAAAGTTTGGCAGATGCTGATGGGATCCACGGCTATGA
TGGAAAGGGAGCCGAACAAGTACGCAGACCTGGTGGCGAGTGATCTCCCG
GTAGAAGGCCCCATCGAAGAAGACATACCTCGCACAATGTACGACCATGA
GCTATTCTGCCACAAGTCGCGAGTCAACGGGAGAGATATGCTGCGGAGAG
TCTTGACGGCGTATGGGCGCTATGATAGAGAGGTGCAATATTGCCAGGGC
ATCAACTACATAACGTCCTTGTTTCTGCTCTATATGCCGGAGGAGAACGC
ATTCTGGATGCTGGTCGCTTCCATGAACCGCCCGTGCGCACCATTAAGGG
AGCTGTTTCTTCCGGGGATGTTGAAGAAGGCCCAAGAATTCCAGTTTGTG
ATGGACTCGCTCACGAAGAAGCACTGCGAGAAGCTCTCAAATCAGATCCT
GGCACATAACCTCACTCCTGCCATGTACGCGACCCAGTGGTTCCTGACCG
CATTCACCCAGCGTTTCCCGTACGACTTGGTGACCCGCGTGTGGGACATG
TTCCTCCTGGAGGACTGGAAAGTGTTCTACAGGGTGTGTCTGGCATTATT
CAAGTAA
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