mRNA_Ecto-sp13_S_contig59430.16492.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig59430.16492.1
Unique NamemRNA_Ecto-sp13_S_contig59430.16492.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig59430.16492.1 vs. uniprot
Match: UPI001421F385 (AAA family ATPase n=1 Tax=Pelagibius litoralis TaxID=374515 RepID=UPI001421F385)

HSP 1 Score: 531 bits (1369), Expect = 9.390e-179
Identity = 269/279 (96.42%), Postives = 270/279 (96.77%), Query Frame = 1
Query:    1 LESLDDETDRRGLELHLRVAQATALRATRGTGAPETGAAWARAQTLCGTQGNKSLLFRILYGRFLFHQGNADLQKARTFGESLLDLGRQLDEEGALLRGHSAIGRTAFGQGDFAEARHHLEQAIALSNPARPAGRHEVDRPELPVLDLCYLSWTSFALGYPETALQQCRRSLEIAEGGAVSYDLVVANGNACYLHQLRQDHNAVGRCAQNVINLATEKGFPHWRSLGVMFQGWLMAATGQSTEGIAVFQTALAEHRATGEVLEVFYFLGLLADLRGRAG 837
            LESL DETDRRGLELHLRVAQATALRATRGTGAPETGAAWARAQTLCGTQGNKSLLFRILYGRFLFHQGNADLQKAR FGESLLDLGRQLDEEGALLRGHSAIGRTAFGQGDFAEARHHLEQAIALSNPARPA RHEV RPELPVLDLCYLSWTSFALGYPETALQQC RSLEIAEGGAVSYDLVVANGNACYLHQLRQDH AV RCAQNVINL+TEKGFPHWRSLGVMFQGWLMAATGQS EGIAVFQTALAEHRATGEVLEV YFLGLLADLRGRAG
Sbjct:  716 LESLTDETDRRGLELHLRVAQATALRATRGTGAPETGAAWARAQTLCGTQGNKSLLFRILYGRFLFHQGNADLQKARIFGESLLDLGRQLDEEGALLRGHSAIGRTAFGQGDFAEARHHLEQAIALSNPARPAARHEVGRPELPVLDLCYLSWTSFALGYPETALQQCWRSLEIAEGGAVSYDLVVANGNACYLHQLRQDHAAVRRCAQNVINLSTEKGFPHWRSLGVMFQGWLMAATGQSAEGIAVFQTALAEHRATGEVLEVCYFLGLLADLRGRAG 994          
BLAST of mRNA_Ecto-sp13_S_contig59430.16492.1 vs. uniprot
Match: UPI001BA9AB8C (adenylate/guanylate cyclase domain-containing protein n=1 Tax=Bradyrhizobium manausense TaxID=989370 RepID=UPI001BA9AB8C)

HSP 1 Score: 159 bits (403), Expect = 1.540e-40
Identity = 110/279 (39.43%), Postives = 147/279 (52.69%), Query Frame = 1
Query:   19 ETDRRGLELHLRVAQATALRATRGTGAPETGAAWARAQTLCGTQGNKSLLFRILYGRFLFHQGNADLQKARTFGESLLDLGRQLDEEGALLRGHSAIGRTAFGQGDFAEARHHLEQAIALSNPAR--PAGRHEVDRPELPVLDLCYLSWTSFALGYPETALQQCRRSL----EIAEGGAVSYDLVVANGNACYLHQLRQDHNAVGRCAQNVINLATEKGFPHWRSLGVMFQGWLMAATGQSTEGIAVFQTALAEHRATGEVLEVFYFLGLLADLRGRAG 837
            E DRR  EL L+VA   AL AT+G  APE G A ARA+ LC   G  + L+ +LYG+++FH   A+   AR   +  L   +   E    L  H   G  AF +GD A AR HLE+A+AL +P R  P     V  P   V  L  LSWT FALGYP+ A  +   +L    E+A      Y L+ A    C L Q R         A+ +I LA+E+ FPH+ + G +F+GW +A +G+   G+A  +  L   +ATG  L   YFLGL A+  GR+G
Sbjct:  733 EADRRRRELDLQVALGVALMATQGWAAPEAGRANARARELCEQIGATAQLWPVLYGQWVFHGVRAEHNAARDVADEFLRRAQDHQEASVTLVAHRISGTGAFWRGDVAAARPHLERALALYDPERHHPLAFLYVQDPR--VAALSGLSWTLFALGYPDQARARSHEALRAARELAHLNTQGYALMFA----CTLEQFRCSWREATDRAEKLIELASEQNFPHFLAAGTVFRGWALAQSGELETGLAQLRQGLPAWQATGAGLYEPYFLGLQAEALGRSG 1005          
BLAST of mRNA_Ecto-sp13_S_contig59430.16492.1 vs. uniprot
Match: UPI0020112AD9 (AAA family ATPase n=2 Tax=Bradyrhizobium liaoningense TaxID=43992 RepID=UPI0020112AD9)

HSP 1 Score: 159 bits (401), Expect = 2.460e-40
Identity = 102/281 (36.30%), Postives = 152/281 (54.09%), Query Frame = 1
Query:    7 SLDDETDRRGLELHLRVAQATALRATRGTGAPETGAAWARAQTLCGTQGNKSLLFRILYGRFLFHQGNADLQKARTFGESLLDLGRQLDEEGALLRGHSAIGRTAFGQGDFAEARHHLEQAIALSNPARPAGRHEVDRPELPVLDLCYLSWTSFALGYPETALQQCRRSL----EIAEGGAVSYDLVVANGNACYLHQLRQDHNAVGRCAQNVINLATEKGFPHWRSLGVMFQGWLMAATGQSTEGIAVFQTALAEHRATGEVLEVFYFLGLLADLRGRAG 837
            +L D+  R   EL L+VA   AL A +G  APE G A ARA+ LC   G+   LF +LYG ++FH   A+L+  R+ GE LL   ++ ++  A   G+  +G  A  +G+   AR HLE+ +AL +PA       +   +  V  L  LSW+ FALGYPE A  +   +L    E++    + Y L+      C L QLR+D +     A ++I LA ++G PH+ + G + +GW++  TG+   G+   +  L   +ATG    V YFL LLA+L GR+G
Sbjct:  481 ALPDDAARWRRELELQVALGVALMAAKGWAAPEVGQANARARDLCERIGDTPWLFPVLYGEWVFHVVRAELESGRSAGEDLLRRAQEQNDAAAETVGNRIVGTAALLRGEPRIARVHLERTLALYDPAAHRSLAFLVAQDPRVSGLSVLSWSLFALGYPEQARARSEEALTDAKELSHRNTLGYALLYG----CILSQLRRDRDEAQGRANSLIALAADQGSPHFLAAGNVVRGWILGTTGELEAGVTQLRDGLTRWQATGAGFLVPYFLSLLAELHGRSG 757          
BLAST of mRNA_Ecto-sp13_S_contig59430.16492.1 vs. uniprot
Match: UPI0004B9B1A1 (AAA family ATPase n=2 Tax=Bradyrhizobium TaxID=374 RepID=UPI0004B9B1A1)

HSP 1 Score: 159 bits (401), Expect = 2.860e-40
Identity = 102/281 (36.30%), Postives = 152/281 (54.09%), Query Frame = 1
Query:    7 SLDDETDRRGLELHLRVAQATALRATRGTGAPETGAAWARAQTLCGTQGNKSLLFRILYGRFLFHQGNADLQKARTFGESLLDLGRQLDEEGALLRGHSAIGRTAFGQGDFAEARHHLEQAIALSNPARPAGRHEVDRPELPVLDLCYLSWTSFALGYPETALQQCRRSL----EIAEGGAVSYDLVVANGNACYLHQLRQDHNAVGRCAQNVINLATEKGFPHWRSLGVMFQGWLMAATGQSTEGIAVFQTALAEHRATGEVLEVFYFLGLLADLRGRAG 837
            +L D+  R   EL L+VA   AL A +G  APE G A ARA+ LC   G+   LF +LYG ++FH   A+L+  R+ GE LL   ++ ++  A   G+  +G  A  +G+   AR HLE+ +AL +PA       +   +  V  L  LSW+ FALGYPE A  +   +L    E++    + Y L+      C L QLR+D +     A ++I LA ++G PH+ + G + +GW++  TG+   G+   +  L   +ATG    V YFL LLA+L GR+G
Sbjct:  730 ALPDDAARWRRELELQVALGVALMAAKGWAAPEVGQANARARDLCERIGDTPWLFPVLYGEWVFHVVRAELESGRSAGEDLLRRAQEQNDAAAETVGNRIVGTAALLRGEPRIARVHLERTLALYDPAAHRSLAFLVAQDPRVSGLSVLSWSLFALGYPEQARARSEEALTDAKELSHRNTLGYALLYG----CILSQLRRDRDEAQGRANSLIALAADQGSPHFLAAGNVVRGWILGTTGELEAGVTQLRDGLTRWQATGAGFLVPYFLSLLAELHGRSG 1006          
BLAST of mRNA_Ecto-sp13_S_contig59430.16492.1 vs. uniprot
Match: UPI001BACC221 (AAA family ATPase n=1 Tax=Bradyrhizobium liaoningense TaxID=43992 RepID=UPI001BACC221)

HSP 1 Score: 154 bits (389), Expect = 1.020e-38
Identity = 101/273 (37.00%), Postives = 142/273 (52.01%), Query Frame = 1
Query:   19 ETDRRGLELHLRVAQATALRATRGTGAPETGAAWARAQTLCGTQGNKSLLFRILYGRFLFHQGNADLQKARTFGESLLDLGRQLDEEGALLRGHSAIGRTAFGQGDFAEARHHLEQAIALSNPARPAGRHEVDRPELPVLDLCYLSWTSFALGYPETALQQCRRSLEIAEGGAVSYDLVVANGNACYLHQLRQDHNAVGRCAQNVINLATEKGFPHWRSLGVMFQGWLMAATGQSTEGIAVFQTALAEHRATGEVLEVFYFLGLLADLRGRAG 837
            E DR   EL L++    AL AT+G  APE G A ARA+ LC   G  S L+ +LYG+++FH   A+   AR   +  L   +   E  A L  H   G  +F +G+ A AR HLEQA+AL +P R      +   +  V  L  +SWT FALGYPE A  + R +L+ A   A    L  A   +C+  Q R         A+ ++ L+TE+ FPH+ +   + +GW +  +G+   G+A     L   RATG  L   YFLGL A++ GR+G
Sbjct:  492 EADRSRCELDLQITLGVALMATQGWAAPEAGRANARARELCEQIGATSQLWPVLYGQWVFHGVRAEHTAAREVADEFLRRVQDHQETSATLVAHRVSGTGSFWRGEVAAARSHLEQALALYDPERHRSLAFLYVQDPRVAALSGISWTLFALGYPEQARARSREALDSARELAHLNTLGYALLFSCFFEQYRGAWREAQERAETLVELSTEQNFPHFLAAATVIRGWALTQSGELETGLAQLLRGLPAWRATGAGLYEPYFLGLQAEVLGRSG 764          
BLAST of mRNA_Ecto-sp13_S_contig59430.16492.1 vs. uniprot
Match: A0A1L3LBH9_9HYPH (Adenylate cyclase / Guanylate cyclase n=9 Tax=Sinorhizobium/Ensifer group TaxID=227292 RepID=A0A1L3LBH9_9HYPH)

HSP 1 Score: 154 bits (388), Expect = 1.550e-38
Identity = 101/283 (35.69%), Postives = 148/283 (52.30%), Query Frame = 1
Query:    1 LESLDDETDRRGLELHLRVAQATALRATRGTGAPETGAAWARAQTLCGTQGNKSLLFRILYGRFLFHQGNADLQKARTFGESLLDLGRQLDEEGALLRGHSAIGRTAFGQGDFAEARHHLEQAIALSNPARPAGRHEVDRPELPVLDLCYLSWTSFALGYPETALQQCRRSL----EIAEGGAVSYDLVVANGNACYLHQLRQDHNAVGRCAQNVINLATEKGFPHWRSLGVMFQGWLMAATGQSTEGIAVFQTALAEHRATGEVLEVFYFLGLLADLRGRAG 837
            LE L D+  R   EL L+VA + AL   +G  APE G A ARA+ LC   G+KS LF +LYG ++FH   A+L+  R  GE LL   ++  E      G+  +G  AF +G+ A AR +LE+++AL +P +      +   +  V  L  LSWT FALGYPE A  +   +L    E++    + Y L+      C L QLR D       A ++I+LA  +G PH+   G + +GW +  TG+ +  +   +  LA  + TG    + +FL LLA +   AG
Sbjct:  723 LEGLPDDAARWRQELELQVALSVALMTAKGWAAPEVGRANARARELCERLGDKSRLFPVLYGEWVFHAVRAELEAGRKAGEELLQRAQEEREVSGETVGNRIVGTDAFLRGEIATAREYLERSLALYDPQQHRSLAFLFAQDPRVAGLSVLSWTLFALGYPEQAQARSNEALAAARELSHRNTLGYALLYG----CILSQLRGDWREARDQADSLISLARAQGSPHFLGAGTIVRGWSLGETGELSAAVTQVREGLAAWKVTGARFLIPFFLSLLARVEIHAG 1001          
BLAST of mRNA_Ecto-sp13_S_contig59430.16492.1 vs. uniprot
Match: UPI00155F3020 (AAA family ATPase n=1 Tax=Bradyrhizobium sp. WBAH10 TaxID=1390116 RepID=UPI00155F3020)

HSP 1 Score: 152 bits (383), Expect = 7.180e-38
Identity = 100/273 (36.63%), Postives = 141/273 (51.65%), Query Frame = 1
Query:   19 ETDRRGLELHLRVAQATALRATRGTGAPETGAAWARAQTLCGTQGNKSLLFRILYGRFLFHQGNADLQKARTFGESLLDLGRQLDEEGALLRGHSAIGRTAFGQGDFAEARHHLEQAIALSNPARPAGRHEVDRPELPVLDLCYLSWTSFALGYPETALQQCRRSLEIAEGGAVSYDLVVANGNACYLHQLRQDHNAVGRCAQNVINLATEKGFPHWRSLGVMFQGWLMAATGQSTEGIAVFQTALAEHRATGEVLEVFYFLGLLADLRGRAG 837
            E DR   EL L++    AL AT+G  APE G A ARA+ LC   G  S L+ +LYG+++FH   A+   AR   +  L   +   E  A L  H   G  +F +G+ A AR HLEQA+AL +P R      +   +  V  L  +SWT FALGYPE A  +   +L+ A   A    L  A   +C+  Q R         A+ ++ L+TE+ FPH+ +   + +GW +  +G+   G+A     L   RATG  L   YFLGL A++ GR+G
Sbjct:  732 EADRSRRELDLQITLGVALMATQGWAAPEAGRANARARELCEQIGATSQLWPVLYGQWVFHGVRAEHTAAREVADEFLRRVQDHQETSATLVAHRVSGTGSFWRGEVAAARSHLEQALALYDPERHRSLAFLYVQDPRVAALSGISWTLFALGYPEQARARSHEALDSARELAHLNTLGYALLFSCFFEQYRGAWREAQERAETLVELSTEQNFPHFLAAATVIRGWALTQSGELETGLAQLLRGLPAWRATGAGLYEPYFLGLQAEVLGRSG 1004          
BLAST of mRNA_Ecto-sp13_S_contig59430.16492.1 vs. uniprot
Match: A0A1U9UN89_CUPNE (Zinc-ribbon domain-containing protein n=1 Tax=Cupriavidus necator TaxID=106590 RepID=A0A1U9UN89_CUPNE)

HSP 1 Score: 150 bits (380), Expect = 1.800e-37
Identity = 101/279 (36.20%), Postives = 141/279 (50.54%), Query Frame = 1
Query:    1 LESLDDETDRRGLELHLRVAQATALRATRGTGAPETGAAWARAQTLCGTQGNKSLLFRILYGRFLFHQGNADLQKARTFGESLLDLGRQLDEEGALLRGHSAIGRTAFGQGDFAEARHHLEQAIALSNPARPAGRHEVDRPELPVLDLCYLSWTSFALGYPETALQQCRRSLEIAEGGAVSYDLVVANGNACYLHQLRQDHNAVGRCAQNVINLATEKGFPHWRSLGVMFQGWLMAATGQSTEGIAVFQTALAEHRATGEVLEVFYFLGLLADLRGRAG 837
            LE+L D   R   EL L++A   A  AT+G  APE GA + RA TLC   G+ + LF  L G   FH    +L  AR   E LL L +Q  +   L++ H A+G + FG G+   AR  LEQ+++L  P +         P   VL L Y++   + LGYP+ AL +    L +A+  +   D   A   A  LH  R +   +   AQ ++ LA E GFP W + G +  GW +   G++ EGI   Q  L+ +RA G  L   +FL LLA+   RAG
Sbjct:  737 LETLPDGPQRARQELALQLALGPAWIATKGFAAPEVGAIYTRALTLCRQLGDTTQLFPTLLGLRTFHIARGELPTARELSEQLLALAQQAQDPALLVQAHRALGASLFGLGELGAARAQLEQSLSLYAPGQYQSPAFFLEPG--VLGLGYMALDLWLLGYPDQALARSEEMLALAQTLSHPPDSATALLFAAELHLYRGETQPMQELAQALLALAAEHGFPFWLANGTILSGWALVTLGRTAEGIEQMQQGLSAYRALGTELSQTHFLVLLAEAYARAG 1013          
BLAST of mRNA_Ecto-sp13_S_contig59430.16492.1 vs. uniprot
Match: W4LI44_9BACT (Guanylate cyclase domain-containing protein (Fragment) n=1 Tax=Candidatus Entotheonella gemina TaxID=1429439 RepID=W4LI44_9BACT)

HSP 1 Score: 150 bits (378), Expect = 3.190e-37
Identity = 97/274 (35.40%), Postives = 146/274 (53.28%), Query Frame = 1
Query:   10 LDDETDRRGLELHLRVAQATALRATRGTGAPETGAAWARAQTLCGTQGNKSLLFRILYGRFLFHQGNADLQKARTFGESLLDLGRQLDEEGALLRGHSAIGRTAFGQGDFAEARHHLEQAIALSNPARP---AGRHEVDRPELPVLDLCYLSWTSFALGYPETALQQCRRSLEIAEGGAVSYDLVVANGNACYLHQLRQDHNAVGRCAQNVINLATEKGFPHWRSLGVMFQGWLMAATGQSTEGIAVFQTALAEHRATGEVLEVFYFLGLLADL 822
            L +  +R   E+ L+VA   AL A +G G PE   A+++A  LC        LF +L+G + F+   A+L+ A   GE  L L ++  + G LL  H A+G T +  G+FA AR HLEQ +AL +P      A  + +D   L V  L YL+W  + LGYPE AL++ + +L +A+       L  +   A +L Q R++     + A+  I LA E  FP + +LG+   GW +A+ GQ  EGIA  + + A+H A G  +   Y L +LAD+
Sbjct:  693 LPETPERVDREIALQVALGQALMAAKGQGVPEVERAFSQALVLCQQVEESPQLFSVLWGLWRFYFVGANLRTALELGEECLSLAQRAQDSGLLLPSHFALGSTFYMLGEFASARSHLEQGVALYDPFEHRELAFSYGID---LKVWCLSYLAWPLWLLGYPEQALRRSQEALTLAQELVHPLSLTGSLDYAAWLSQFRREAPVAQKHAEAAIALAREHEFPQYETLGMSLWGWALASQGQGDEGIAALRQSTADHLAAGADINRPYCLAMLADV 963          
BLAST of mRNA_Ecto-sp13_S_contig59430.16492.1 vs. uniprot
Match: UPI00047DDF58 (AAA family ATPase n=1 Tax=Ensifer sp. WSM1721 TaxID=1041159 RepID=UPI00047DDF58)

HSP 1 Score: 150 bits (378), Expect = 3.330e-37
Identity = 103/283 (36.40%), Postives = 146/283 (51.59%), Query Frame = 1
Query:    1 LESLDDETDRRGLELHLRVAQATALRATRGTGAPETGAAWARAQTLCGTQGNKSLLFRILYGRFLFHQGNADLQKARTFGESLLDLGRQLDEEGALLRGHSAIGRTAFGQGDFAEARHHLEQAIALSNPARPAGRHEVDRPELPVLDLCYLSWTSFALGYPETALQQCRRSL----EIAEGGAVSYDLVVANGNACYLHQLRQDHNAVGRCAQNVINLATEKGFPHWRSLGVMFQGWLMAATGQSTEGIAVFQTALAEHRATGEVLEVFYFLGLLADLRGRAG 837
            LE L D+  R   EL L+VA + AL   +G  APE G A ARA+ LC    + S L  +LYG ++FH   A+L+  R  GE LL   ++  E  A   G+  +G  AF +G+ A AR +LE+++AL +P +      +   +  V  L  LSWT FALGYPE A  +   +L    E++    + Y L+      C L QLR D       A ++I LA  +G PH+   G + +GW +  TG+  E I   Q  LA  + TG    V +FL LLA +  +AG
Sbjct:  723 LEGLPDDAARWRQELELQVALSVALMTAKGWAAPEVGQANARARELCERLADTSRLLPVLYGDWVFHVVRAELEAGRKAGEELLKRAQEEREVSAETVGNRIVGTDAFLRGEIAIAREYLERSLALYDPQQHRALAFLFAQDPRVAGLSVLSWTLFALGYPEQAEARSNEALADARELSHRNTLGYALLYG----CILSQLRGDWREARDRADSLITLARAQGSPHFFGAGTIVRGWTLGQTGELPEAITKVQEGLASWQMTGARFLVPFFLSLLARVETQAG 1001          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig59430.16492.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001421F3859.390e-17996.42AAA family ATPase n=1 Tax=Pelagibius litoralis Tax... [more]
UPI001BA9AB8C1.540e-4039.43adenylate/guanylate cyclase domain-containing prot... [more]
UPI0020112AD92.460e-4036.30AAA family ATPase n=2 Tax=Bradyrhizobium liaoninge... [more]
UPI0004B9B1A12.860e-4036.30AAA family ATPase n=2 Tax=Bradyrhizobium TaxID=374... [more]
UPI001BACC2211.020e-3837.00AAA family ATPase n=1 Tax=Bradyrhizobium liaoninge... [more]
A0A1L3LBH9_9HYPH1.550e-3835.69Adenylate cyclase / Guanylate cyclase n=9 Tax=Sino... [more]
UPI00155F30207.180e-3836.63AAA family ATPase n=1 Tax=Bradyrhizobium sp. WBAH1... [more]
A0A1U9UN89_CUPNE1.800e-3736.20Zinc-ribbon domain-containing protein n=1 Tax=Cupr... [more]
W4LI44_9BACT3.190e-3735.40Guanylate cyclase domain-containing protein (Fragm... [more]
UPI00047DDF583.330e-3736.40AAA family ATPase n=1 Tax=Ensifer sp. WSM1721 TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig59430contigEcto-sp13_S_contig59430:3..839 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size837
Hectar predicted targeting categoryother localisation
Exons1
Cds size504
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463825.9269552-UTR-Ecto-sp13_S_contig59430:2..1831681463825.9269552-UTR-Ecto-sp13_S_contig59430:2..183Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig59430 3..183 +
1681463825.9504879-UTR-Ecto-sp13_S_contig59430:687..8391681463825.9504879-UTR-Ecto-sp13_S_contig59430:687..839Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig59430 688..839 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463825.9374971-CDS-Ecto-sp13_S_contig59430:183..6871681463825.9374971-CDS-Ecto-sp13_S_contig59430:183..687Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig59430 184..687 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig59430.16492.1prot_Ecto-sp13_S_contig59430.16492.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig59430 184..687 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig59430.16492.1

>prot_Ecto-sp13_S_contig59430.16492.1 ID=prot_Ecto-sp13_S_contig59430.16492.1|Name=mRNA_Ecto-sp13_S_contig59430.16492.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=168bp
MAASCFIKAMPTCRRPGPSVNPCSTLDGSWTKKAPCCAGTAPLAALPSAR
ATSQKRATTWSRPSLSAIRQGRLGVMRWTGRNCRFSISATSPGHPLPWVT
PRPPCSNAGAPWKSPKAVRFPMTLWSQTAMPVTCTSCAKITTPSGAARRT
SSTWRRKRAFRTGARWG*
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mRNA from alignment at Ecto-sp13_S_contig59430:3..839+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig59430.16492.1 ID=mRNA_Ecto-sp13_S_contig59430.16492.1|Name=mRNA_Ecto-sp13_S_contig59430.16492.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=837bp|location=Sequence derived from alignment at Ecto-sp13_S_contig59430:3..839+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTGGAATCGCTGGACGATGAAACCGACCGCCGGGGGCTGGAGCTGCACCT GCGGGTGGCCCAGGCAACCGCGCTGAGGGCGACAAGAGGAACCGGCGCAC CGGAAACCGGGGCCGCCTGGGCCCGGGCCCAGACCCTCTGCGGCACCCAG GGCAACAAATCGCTGCTGTTTCGTATCCTCTATGGCCGCTTCCTGTTTCA TCAAGGCAATGCCGACCTGCAGAAGGCCCGGACCTTCGGTGAATCCCTGC TCGACCTTGGACGGCAGCTGGACGAAGAAGGCGCCCTGCTGCGCGGGCAC AGCGCCATTGGCCGCACTGCCTTCGGCCAGGGCGACTTCGCAGAAGCGCG CCACCACCTGGAGCAGGCCATCGCTCTCAGCAATCCGGCAAGGCCGGCTG GGCGTCATGAGGTGGACAGGCCGGAACTGCCGGTTCTCGATCTCTGCTAC CTCTCCTGGACATCCTTTGCCCTGGGTTACCCCGAGACCGCCCTGCAGCA ATGCCGGCGCTCCTTGGAAATCGCCGAAGGCGGTGCGGTTTCCTATGACC TTGTGGTCGCAAACGGCAATGCCTGTTACCTGCACCAGCTGCGCCAAGAT CACAACGCCGTCGGGCGCTGCGCGCAGAACGTCATCAACCTGGCGACGGA AAAGGGCTTTCCGCACTGGCGCTCGCTGGGGGTGATGTTCCAGGGCTGGC TGATGGCCGCGACCGGCCAAAGCACCGAAGGCATCGCTGTCTTTCAGACG GCACTGGCCGAGCACAGGGCAACCGGCGAGGTTCTGGAGGTCTTTTACTT CCTCGGCCTGCTGGCCGATCTGCGGGGACGGGCGGGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig59430:3..839+

>mRNA_Ecto-sp13_S_contig59430.16492.1 ID=mRNA_Ecto-sp13_S_contig59430.16492.1|Name=mRNA_Ecto-sp13_S_contig59430.16492.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=504bp|location=Sequence derived from alignment at Ecto-sp13_S_contig59430:3..839+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCCGCTTCCTGTTTCATCAAGGCAATGCCGACCTGCAGAAGGCCCGG
ACCTTCGGTGAATCCCTGCTCGACCTTGGACGGCAGCTGGACGAAGAAGG
CGCCCTGCTGCGCGGGCACAGCGCCATTGGCCGCACTGCCTTCGGCCAGG
GCGACTTCGCAGAAGCGCGCCACCACCTGGAGCAGGCCATCGCTCTCAGC
AATCCGGCAAGGCCGGCTGGGCGTCATGAGGTGGACAGGCCGGAACTGCC
GGTTCTCGATCTCTGCTACCTCTCCTGGACATCCTTTGCCCTGGGTTACC
CCGAGACCGCCCTGCAGCAATGCCGGCGCTCCTTGGAAATCGCCGAAGGC
GGTGCGGTTTCCTATGACCTTGTGGTCGCAAACGGCAATGCCTGTTACCT
GCACCAGCTGCGCCAAGATCACAACGCCGTCGGGCGCTGCGCGCAGAACG
TCATCAACCTGGCGACGGAAAAGGGCTTTCCGCACTGGCGCTCGCTGGGG
GTGA
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