mRNA_Ecto-sp13_S_contig594.16488.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig594.16488.1
Unique NamemRNA_Ecto-sp13_S_contig594.16488.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig594.16488.1 vs. uniprot
Match: D8LNR0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNR0_ECTSI)

HSP 1 Score: 692 bits (1786), Expect = 5.010e-246
Identity = 378/402 (94.03%), Postives = 384/402 (95.52%), Query Frame = 1 
Query:    1 MSRSKIYGALSFMVVLHDGSGFLRPVLQTTTSDLALLSRS--GLRRTGCVKRTSSSNLGVALSRSCLSRSERGGIAMMAKKRRXXRVDGEQSAAKTPPKPAAPEXXXXXXXXXXXE---GGVVMPPMPSELGVDAVMTAQKFQGEDMLSPAAFQPKPEVSDLEMAGGEGLSARDLLDEPSTERKRSKYSGFDLDVELPMESESRKSGKGGLGSVMSPDGVMPLPDFRELAKKPRKKDREQQATNVDEANKVERGNMAAFTKLLELDPEADSEEALFTTESYDAFSSVLGEGKPFVGIANSYLQSGHTVLLALVLLCGFIEVPGFPLTSLPYDVREFLKTGLLVTYVINAGIAYLSYLEAKRIGQPAGFWAVKGFVLGGLSFNELSQIEPVKVKPTGGRERRG 1191
            MSRSKIYGALSFMVVLHDGSGFL P L+ TTSDL+LLSRS  GLRRTGCVKRTSSSNLGVALSRSCLSRSERGGI MMAKK  XX VDG +SAAKTPPKPA PEXXXXXXXXXXX    GGVVMPPMPSELGVDAVMTAQKFQGEDMLSPAAFQPKPEVSDLEMAGG GLS RDLLDEPSTERKRSKYSGFDLDVELPMESESRKSGKGGLGSVMSPDGVMPLPDFRELAKKPRKKDREQ+AT VDEANKVERGNMAAFTKLLELDPEADSEEALFTTESYDAFSSVLGEGKPFVGIANSYLQSGHTVLLALVLLCGF+E+PGFPLTSLPYDVREFLKTGLLVTYVINAGIAYLSYLEAKRIGQPAGFWAVKGFVLGGLSFNELSQIEPVKVKPTGGRERRG
Sbjct:    1 MSRSKIYGALSFMVVLHDGSGFLGPALRATTSDLSLLSRSEAGLRRTGCVKRTSSSNLGVALSRSCLSRSERGGITMMAKKXXXXXVDGGKSAAKTPPKPAVPEXXXXXXXXXXXXXXXGGVVMPPMPSELGVDAVMTAQKFQGEDMLSPAAFQPKPEVSDLEMAGGGGLSGRDLLDEPSTERKRSKYSGFDLDVELPMESESRKSGKGGLGSVMSPDGVMPLPDFRELAKKPRKKDREQKATKVDEANKVERGNMAAFTKLLELDPEADSEEALFTTESYDAFSSVLGEGKPFVGIANSYLQSGHTVLLALVLLCGFVEIPGFPLTSLPYDVREFLKTGLLVTYVINAGIAYLSYLEAKRIGQPAGFWAVKGFVLGGLSFNELSQIEPVKVKPTGGRERRG 402
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BLAST of mRNA_Ecto-sp13_S_contig594.16488.1 vs. uniprot
Match: A0A836CNB5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNB5_9STRA)

HSP 1 Score: 228 bits (582), Expect = 2.690e-65
Identity = 142/311 (45.66%), Postives = 181/311 (58.20%), Query Frame = 1 
Query:  349 VVMPPMPSELGVDAVMTAQKFQGEDMLSP---AAFQPKPEVSDLEMAGGEGLSARDLLDEPSTERKRSKYSGFDLDVELPMESESRKSGKGGLGSVMSP--------------DGVMPLPDFRELAKKPRKKDREQQATNVDEANKVERGNMAAFTKLLELDPEADSEEALFTTESYDAFSSVLGEGKPFVGIANSYLQSGHTVLLALVLLCGFIEVPGFPLTSLPYDVREFLKTGLLVTYVINAGIAYLSYLEAKRIGQPAGFWAVKGFVLGGLSFNELSQ--------------IEPVKVKPTGGRERR 1188
            + +PP+PSEL   A +   + +    L         P   + D EM    G        E + E K  KYS FDLD+ELP+ESES K G+    S  +               +GVMPLPD +EL KK  K+  E  A      +K+ RG+  +FTKLLELDPEADS+ +LF  E YD  S+ LGEG+PFVG+ NSYLQSGHTVL  L +LCGF+  PGFPLT LPYD+R FL+ GL++TYVINA +A  ++ +AK +GQP  FWAVK  VLGGL++NEL+Q              IEP K+K  G   RR
Sbjct:   78 IKLPPLPSELSRSASLAEIENEANANLIELLQGKVAPVGSLLDSEMGSAVGR-------EGAGEVKSKKYS-FDLDIELPVESES-KDGEDTKDSSATAAPRIDFKADLKPTTEGVMPLPDLKELGKKIAKRQAEVSAQPAK--SKIGRGDTKSFTKLLELDPEADSDMSLFNQEGYDYMSAALGEGQPFVGLPNSYLQSGHTVLAVLCVLCGFVVYPGFPLTELPYDLRSFLQRGLMITYVINAAMAAAAFGKAKSVGQPPVFWAVKTLVLGGLAYNELAQXXXXXXXXXXXXXQIEPPKLKKKGKGGRR 377
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BLAST of mRNA_Ecto-sp13_S_contig594.16488.1 vs. uniprot
Match: A0A7S1UFT4_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UFT4_9STRA)

HSP 1 Score: 148 bits (374), Expect = 7.190e-36
Identity = 81/178 (45.51%), Postives = 111/178 (62.36%), Query Frame = 1 
Query:  640 GVMPLPDFRELAKKPRKKDR---EQQATN-VDEANKVERGNMAAFTKLLELDPEADSEEALFTTESYDAFSSVLGEG-KPFVGIANSYLQSGHTVLLALVLLCGFIEVPGFPLTSLPYDVREFLKTGLLVTYVINAGIAYLSYLEAKRIGQPAGFWAVKGFVLGGLSFNELSQIEPVK 1158
            G + LPDF +  KK         E+  TN + E  +  R N+ +    LELDP AD++   F  E YD  ++++GEG +PF+GI   YLQ+GH++L  + L+C F+EVPG PLT LP  +R+FL TGLLVTY INAG   L+   A++  QP   W +K F LGGL+  EL++IEPVK
Sbjct:  187 GTLKLPDFEDFRKKQEAXXXXXXERGVTNPIAELQERTRDNLLSE---LELDPFADADFERFQAEEYDLIAALIGEGSRPFIGIPLPYLQTGHSMLFLITLVCAFVEVPGNPLTELPQPIRDFLSTGLLVTYAINAGTVLLALSAAEQRRQPKALWGIKCFFLGGLALKELTEIEPVK 361
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BLAST of mRNA_Ecto-sp13_S_contig594.16488.1 vs. uniprot
Match: A0A7S2V0V8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V0V8_9STRA)

HSP 1 Score: 145 bits (366), Expect = 2.490e-34
Identity = 84/217 (38.71%), Postives = 130/217 (59.91%), Query Frame = 1 
Query:  538 RSKYSGFDLD------VELPMESESRKSGKGGLGSVMSPD-----GVMPLPDFRELAKKPRKKDREQQATNVDEANKVERGNMAAFTKLLELDPEADSEEALFTTESYDAFSSVLGE-GKPFVG-IANSYLQSGHTVLLALVLLCGFIEVPGFPLTSLPYDVREFLKTGLLVTYVINAGIAYLSYLEAKRIGQPAGFWAVKGFVLGGLSFNELSQIE 1149
            + K  GF++D      +ELP+ SE R +G   L +          GV  LPD ++++ +P+K++  +      +  ++ R ++  F ++ E++P  D   ++F  + YD  ++VLG   +P  G I   YLQ+GHTVLLA+VLLC  IE PG PLT LP ++R+FLKTGL+V Y INA +A  S  +A+ + QP  FW  K  +LGGL++NEL+Q +
Sbjct:  195 KKKKKGFNIDEFDPDDIELPVPSE-RLAGAADLTTSFDKQAEETTGVFSLPDLKDVSARPKKQEAPEPVQAPAKRARLTRSDVEEFRRMTEIEPGFDP--SMFDDDKYDLANAVLGTYARPMFGAIDQGYLQAGHTVLLAVVLLCANIEYPGNPLTELPTEIRDFLKTGLVVNYAINAVLAVFSIFKARNLSQPPQFWFGKTLLLGGLAYNELTQAK 408
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BLAST of mRNA_Ecto-sp13_S_contig594.16488.1 vs. uniprot
Match: A0A7S3NNS6_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NNS6_9STRA)

HSP 1 Score: 142 bits (359), Expect = 4.670e-34
Identity = 74/176 (42.05%), Postives = 107/176 (60.80%), Query Frame = 1 
Query:  634 PDGVMPLPDFRELAKKPRKKDREQQATNVDEA---NKVERGNMAAFTKLLELDPEADSEEALFTTESYDAFSSVLGEGKP-FVGIANSYLQSGHTVLLALVLLCGFIEVPGFPLTSLPYDVREFLKTGLLVTYVINAGIAYLSYLEAKRIGQPAGFWAVKGFVLGGLSFNELSQIE 1149
            PDG + LP F  + K+  ++ RE      +E    N++E  + AA+TK++E DP AD +  L      D FS VLGEG   F+GI ++YLQ GH  LL ++ +  F+  P FPLT  P   R F+K GL   Y+INAG+A++++ EAK++ QP  FW VK F LGG++ N+L  +E
Sbjct:  157 PDGRLSLPRFEAVTKRAAERKREAVENRGNEKKNQNRLETFDRAAYTKIIESDPNADVDPNLIRQNDVDYFSIVLGEGADKFIGIESAYLQIGHAALLPVLFIAAFVVEPAFPLTDAPEIYRSFIKQGLCCIYLINAGVAFVAFQEAKKVAQPPLFWLVKSFFLGGVALNQLRTME 332
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BLAST of mRNA_Ecto-sp13_S_contig594.16488.1 vs. uniprot
Match: A0A7S0PWW7_9STRA (Hypothetical protein n=1 Tax=Asterionellopsis glacialis TaxID=33640 RepID=A0A7S0PWW7_9STRA)

HSP 1 Score: 132 bits (332), Expect = 2.650e-30
Identity = 77/199 (38.69%), Postives = 113/199 (56.78%), Query Frame = 1 
Query:  559 DLDVELPMESESRKSGKGGLGSVMSPDGVMPLPDFRELAKKPRKKDR--EQQATNVDEANKVERGNMAAFTKLLELDPEADSEEALFTTESYDAFSSVLGE-GKPFVGIANSYLQSGHTVLLALVLLCGFIEVPGFPLTSLPYDVREFLKTGLLVTYVINAGIAYLSYLEAKRIGQPAGFWAVKGFVLGGLSFNELSQI 1146
            D D +LP+ ++   +   G G        + LP+ R+  KK   ++   +Q+A    +  K++R +  AF KLLE DP ADS+ A F  E Y   S++LGE  KPF+ I    LQ GH +    ++L GF+E PGFPLT+LP  +R  L+ GL   Y IN  +A L+  +A   GQP   WA K F +GGL+F++L+Q+
Sbjct:  130 DDDNDLPITNDGSDAPGRGAGGAKD---ALVLPNIRDTLKKKAMEEEVAKQEAEEAAKTPKIKRSDRVAFEKLLEQDPYADSDPAFFEEEEYGTVSALLGERAKPFLSIPFGPLQVGHFIGALGIVLMGFVEYPGFPLTNLPTPLRGALQGGLGTVYAINTVLAILAIFKASERGQPPALWAAKCFGVGGLAFDQLTQL 325
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BLAST of mRNA_Ecto-sp13_S_contig594.16488.1 vs. uniprot
Match: A0A7S2III6_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2III6_9STRA)

HSP 1 Score: 130 bits (327), Expect = 1.270e-29
Identity = 69/176 (39.20%), Postives = 107/176 (60.80%), Query Frame = 1 
Query:  625 VMSPDGVMPLPDFRE-LAKKPRKKDREQQATNVDEANKVERGNMAAFTKLLELDPEADSEEALFTTESYDAFSSVLGEG-KPFVGIANSYLQSGHTVLLALVLLCGFIEVPGFPLTSLPYDVREFLKTGLLVTYVINAGIAYLSYLEAKRIGQPAGFWAVKGFVLGGLSFNELSQI 1146
            V S +  + LP+ R+ +A+K ++K  E       E  ++ R +  A  +LLE+DP AD ++  F  E Y   S++L EG KPF+GI +  LQ GH +L   ++L  ++E PGFPLT+LP  +RE L++GL   YV+N  +A L+  +A    QP   WA K F +GGL+F++L+Q+
Sbjct:  150 VSSREKALDLPNIRDAMAQKRQRKKEEAFEAERMERRRISRSDKDAMARLLEMDPLADDDKRNFEEEEYTTVSALLAEGAKPFLGITSGQLQVGHFILSLGIILMAYVEYPGFPLTNLPTPLRECLQSGLGTVYVVNTVLAILAVFKAMERDQPPALWAAKSFSVGGLAFDQLTQL 325
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BLAST of mRNA_Ecto-sp13_S_contig594.16488.1 vs. uniprot
Match: A0A7S1GR37_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GR37_CYCTE)

HSP 1 Score: 127 bits (319), Expect = 2.740e-29
Identity = 76/189 (40.21%), Postives = 108/189 (57.14%), Query Frame = 1 
Query:  631 SPDGVMPLPDFRELAKKPR-----KKDREQQATNVDEANKVERGNMAAFTKLLELDPEADSEEALFTTESYDAFSSVLGE-GKPFVGIANSYLQSGHTVLLALVLLCGFIEVPGFPLTSLPYDVREFLKTGLLVTYVINAGIAYLSYLEAKRIGQPAGFWAVKGFVLGGLSFNELSQIEPVKVKPTGGR 1179
            +P     LPD  ++ +K       K ++E+QA    E  KV+R + AA+ KLLE  P AD++++LF  E Y   S++LGE  KPF+GI    LQ GH V    ++L  F+E PGFPLT+LP  +R+ L+ GL   Y IN  +A  S  +A   GQP   W  K   +GGL+F++LSQ+   +V   G R
Sbjct:   85 APSDSFALPDINDILRKREADEFVKVEQEKQA----EKRKVKRSDKAAYQKLLEQSPFADADDSLFEEEEYGTVSALLGERAKPFLGIPTGPLQVGHFVGALGIVLMAFVEYPGFPLTNLPTPIRDALQGGLATIYSINFVLAIFSVFKASERGQPIPLWFAKTLSVGGLAFDQLSQLPTSEVAAKGKR 269
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BLAST of mRNA_Ecto-sp13_S_contig594.16488.1 vs. uniprot
Match: W7TR79_9STRA (Uncharacterized protein n=4 Tax=Monodopsidaceae TaxID=425072 RepID=W7TR79_9STRA)

HSP 1 Score: 128 bits (322), Expect = 1.290e-28
Identity = 62/124 (50.00%), Postives = 86/124 (69.35%), Query Frame = 1 
Query:  775 ELDPEADSEEALFTTESYDAFSSVLGEGKPFVGIANSYLQSGHTVLLALVLLCGFIEVPGFPLTSLPYDVREFLKTGLLVTYVINAGIAYLSYLEAKRIGQPAGFWAVKGFVLGGLSFNELSQI 1146
            +L+ E  + + L   + YD  S++LGEG+P +GI   YLQS HTV++ + LLC FIE PGFPLT+ PY++R+FLK GL+  Y+INA +A+ S  EA++  Q   FWA+K FVLG L+ NEL  I
Sbjct:  260 QLEEEEKATKELEPIDDYDLSSAILGEGRPVLGIGLPYLQSCHTVIILVSLLCAFIEFPGFPLTNFPYELRDFLKQGLVAVYLINAVLAWDSIKEARKRDQSVFFWALKCFVLGALAHNELLLI 383
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BLAST of mRNA_Ecto-sp13_S_contig594.16488.1 vs. uniprot
Match: A0A1E7FEJ1_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FEJ1_9STRA)

HSP 1 Score: 127 bits (319), Expect = 2.160e-28
Identity = 72/182 (39.56%), Postives = 108/182 (59.34%), Query Frame = 1 
Query:  616 LGSVMSPDGVMPLPDFRELAKKPRK----KDREQQATNVDEANKVERGNMAAFTKLLELDPEADSEEALFTTESYDAFSSVLGE-GKPFVGIANSYLQSGHTVLLALVLLCGFIEVPGFPLTSLPYDVREFLKTGLLVTYVINAGIAYLSYLEAKRIGQPAGFWAVKGFVLGGLSFNELSQI 1146
            + SV   DG +PLPD ++  K+       K R ++  +  +  K++R +  A  KLLE DP AD++E+ F  + Y   S++LGE  KPF+GI    LQ GH +   +++L  FIE PGFPLT+LP  +R  L+ GL   Y IN  +A ++  +A   GQPA  W  K F +GGL+F++L+Q+
Sbjct:  163 ISSVEKQDGSLPLPDIKDTLKRKELGSTIKGRMEEEDD-SKKKKIDRRDKVALLKLLEQDPYADADESFFEEQEYTFVSALLGERAKPFMGIPTGPLQVGHFIGALVIVLMAFIEYPGFPLTNLPSPIRGALQGGLGTVYGINVILAIVAVFKAGERGQPALLWIAKVFTVGGLAFDQLTQL 343
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig594.16488.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
D8LNR0_ECTSI5.010e-24694.03Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CNB5_9STRA2.690e-6545.66Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S1UFT4_9STRA7.190e-3645.51Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S2V0V8_9STRA2.490e-3438.71Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S3NNS6_9STRA4.670e-3442.05Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S0PWW7_9STRA2.650e-3038.69Hypothetical protein n=1 Tax=Asterionellopsis glac... [more]
A0A7S2III6_9STRA1.270e-2939.20Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A7S1GR37_CYCTE2.740e-2940.21Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
W7TR79_9STRA1.290e-2850.00Uncharacterized protein n=4 Tax=Monodopsidaceae Ta... [more]
A0A1E7FEJ1_9STRA2.160e-2839.56Uncharacterized protein n=1 Tax=Fragilariopsis cyl... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig594contigEcto-sp13_S_contig594:7016..14584 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score701.4
Seed ortholog evalue2.4e-199
Seed eggNOG ortholog2880.D8LNR0
Model size1900
Hectar predicted targeting categoryother localisation
Exons9
EggNOG OGs2DY4V@1,2S6TZ@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-08_006180.1
Cds size1194
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig594.16488.1prot_Ecto-sp13_S_contig594.16488.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig594 7016..13878 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463825.5273926-CDS-Ecto-sp13_S_contig594:7015..72261681463825.5273926-CDS-Ecto-sp13_S_contig594:7015..7226Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig594 7016..7226 +
1681463825.5392263-CDS-Ecto-sp13_S_contig594:8218..84121681463825.5392263-CDS-Ecto-sp13_S_contig594:8218..8412Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig594 8219..8412 +
1681463825.5583735-CDS-Ecto-sp13_S_contig594:9320..94521681463825.5583735-CDS-Ecto-sp13_S_contig594:9320..9452Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig594 9321..9452 +
1681463825.5711887-CDS-Ecto-sp13_S_contig594:10067..101481681463825.5711887-CDS-Ecto-sp13_S_contig594:10067..10148Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig594 10068..10148 +
1681463825.5822375-CDS-Ecto-sp13_S_contig594:10729..108281681463825.5822375-CDS-Ecto-sp13_S_contig594:10729..10828Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig594 10730..10828 +
1681463825.5930302-CDS-Ecto-sp13_S_contig594:11354..114611681463825.5930302-CDS-Ecto-sp13_S_contig594:11354..11461Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig594 11355..11461 +
1681463825.6073468-CDS-Ecto-sp13_S_contig594:12299..124741681463825.6073468-CDS-Ecto-sp13_S_contig594:12299..12474Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig594 12300..12474 +
1681463825.61964-CDS-Ecto-sp13_S_contig594:13108..131861681463825.61964-CDS-Ecto-sp13_S_contig594:13108..13186Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig594 13109..13186 +
1681463825.6303437-CDS-Ecto-sp13_S_contig594:13761..138781681463825.6303437-CDS-Ecto-sp13_S_contig594:13761..13878Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig594 13762..13878 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463825.641264-UTR-Ecto-sp13_S_contig594:13878..145841681463825.641264-UTR-Ecto-sp13_S_contig594:13878..14584Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig594 13879..14584 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig594.16488.1

>prot_Ecto-sp13_S_contig594.16488.1 ID=prot_Ecto-sp13_S_contig594.16488.1|Name=mRNA_Ecto-sp13_S_contig594.16488.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=398bp
MSRSKIYGALSFMVVLHDGSGFLRPVLQTTTSDLALLSRSGLRRTGCVKR
TSSSNLGVALSRSCLSRSERGGIAMMAKKRRRRRVDGEQSAAKTPPKPAA
PEPEVDVDGEDEDEGGVVMPPMPSELGVDAVMTAQKFQGEDMLSPAAFQP
KPEVSDLEMAGGEGLSARDLLDEPSTERKRSKYSGFDLDVELPMESESRK
SGKGGLGSVMSPDGVMPLPDFRELAKKPRKKDREQQATNVDEANKVERGN
MAAFTKLLELDPEADSEEALFTTESYDAFSSVLGEGKPFVGIANSYLQSG
HTVLLALVLLCGFIEVPGFPLTSLPYDVREFLKTGLLVTYVINAGIAYLS
YLEAKRIGQPAGFWAVKGFVLGGLSFNELSQIEPVKVKPTGGRERRG*
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mRNA from alignment at Ecto-sp13_S_contig594:7016..14584+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig594.16488.1 ID=mRNA_Ecto-sp13_S_contig594.16488.1|Name=mRNA_Ecto-sp13_S_contig594.16488.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=7569bp|location=Sequence derived from alignment at Ecto-sp13_S_contig594:7016..14584+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCCCGGTCCAAGATTTACGGAGCCTTGAGCTTCATGGTGGTCCTGCA
TGATGGTAGCGGCTTCCTGAGGCCTGTGCTACAGACAACAACGAGCGACT
TGGCATTGCTGTCGCGATCAGGTCTCCGGAGGACCGGCTGCGTCAAGCGA
ACATCTTCATCCAACCTCGGCGTTGCCCTATCACGGTCTTGCCTCTCCAG
GAGTGAACGAGGTGTGGTGACTTGCATGTCTACTGTACGGGCCTCATGTG
TCCTGCGATGGTATATTTTTTGGGTTGTGTACTGCACATGCATGTCATGA
TCGAGGCCAGAGGAGCATGTTGATGAGGACGACATGCCACATGTGCGTTG
GTGCTGGCTGCACGTTTACCCTGGAGGAAGCGTGATGAACGTTGTTGTTT
TCCTCACACAGCCCTCTCATCGTAAGGATAATGGCACTGTTCCTGTCTAG
AAAATTGCGCCTCTGCAACAAGGCGTTATGTACTTCGCTATAATGCTGCC
TTCGACTACCATACTGCTGTACTCCTGTACTGCTGTGCTACATCACCGCA
GCGGTGCATGAATGTTCTCCATGAGCAGACCGTCATGATGCTGTCCTTTG
TACACACAGGAGATGTATGGAGTGGGTAGGGGGTGGTTCAGTTGTCACAC
TTGCAGGCGTCCATTGCAAACACGCTCGTTTGATGCTTGTTGTGCAGTGA
AAGCAGGGCACTGCAGGCCTTGCACACGGCATGGACGCGCGGAATATTGT
TGCAGTAATCCACTTGCGTCCTTTCTCTGCCAACAACTGCCGCGCCGGCT
CGCACCCGTTCACGATGGAAGGTCACCACTTTTCGTTACGTTTTTCTCGT
TGCGACCAATTTTCGTCACCTGAGTTACGACTACCTCACCTCTAGGTACT
CCTCGGCAGAATTATCACCGTGCGTTGTGAAGGTATACGAAGACTTCTCG
AGCCCCCCCCCCCCTCCCCCCCCCACCGTTTTTGTGACTATGGTATTTTA
GCTTGATTGTTTGCCGTCCGAATGGAAGTGCCTCAAGTAGTATCTCGCCT
TAGGCAAGCGTGCAATGAGTGCACCTGCGAGCTCGTTCCGGGAAAAAGAT
GCCATCGTACCGGAAGCAAGGAGGATGCGCAAGAATCTGGCAAGCAATGG
GTGACCGATTTCCCATCGCCCGGCCCGCCTCCCCCGTCTCTCGCGTACTG
TAGGCGGCATTGCGATGATGGCCAAGAAGCGGCGAAGGCGGAGAGTAGAC
GGAGAGCAATCAGCAGCGAAAACCCCGCCGAAACCAGCCGCACCCGAACC
CGAGGTGGACGTGGACGGGGAAGATGAAGATGAGGGTGGGGTTGTGATGC
CGCCGATGCCATCGGAATTGGGGGTGGACGCCGTGATGACCGCACAGGTG
CACCATGTTTTGATCGGCGCCAGCAGTTCGTACCTCAGGCGTTATCGAGC
AACTGTTGGGCCAAGTTTTCTCTTTCCTCTTGCGGTCCTGTGCAGGTTTC
GTGCTTGCCGTTCCAGCGTTCCCTTGCCAACGACAGTGACCGTGCCACGT
TTGGGCGTATGCCACACGCGCCTCGTGTCTTGACGGGGAGCTTCGATTTC
TCGGTGTAGCTTCAAAGCAGTGAACAGTGTGTGAGTTAGACGTGGAGTGT
TTCGTTGGCTATCTATGACCGTACTAACCGGCCAACCCTTGACATGTGCG
CTTTTTGTGTGCTGCCACTTGGCATGCCTGCACATGTGAATATTAGGCCG
AAACCAAGATTTCATGCTTTGGGGCTTCACTCTTGCTACTATGCTTTTGG
GGCTCCATGAAATCTGGTTGAATCGCTCGTGGCTCGTGCGTGTGACACCT
CTGCGGGATTGAGTCCAACCATACCGAAGCGTTCTGCGATTGCAACCGAC
CCCTCTCAAGCTTTGGTGGCAAAGGAGCTACACTTTTCCTCGGAGAATCT
TTATGTCGCTAGACCACTAGTATGCCCTCTTTGCTCTGATACATAGCATG
TTGTCGACGGTGCACCAGGGTAATTTACCACCACGACTCATCTCCCCGTC
GCTATTGCTCCCAAAAGACCCCCCTCCCTCTCTCTTCTGGTTTTTTTTTT
CTCTCTCCCTTTACCTCTGCGTCTCGTTCTCACAATTTTTCTTGCTCCGC
ATACTCTTCTTTGTGTTTGTCTCTCGATCTTGCCGCTTCTGCCTCTCTTC
ATCGCATGACACCCCTCTCACCCCCCCCCTACCCTCCGTCTGACCGTGGG
CGTTCATCCCTCTCGGCCCTTCCGGTCTACGTCACGCACCGTCCATCAAG
CACAGAAGTTCCAAGGCGAAGACATGCTGTCGCCAGCAGCGTTCCAGCCG
AAGCCGGAGGTGTCCGACCTGGAGATGGCCGGTGGGGAAGGGCTCAGCGC
CAGGGATCTCCTGGACGAACCTTCCACCGAACGAAAGGTACGATAGCTAC
AACACGTCACCACATGCTGCGTGTAAAGCCTTTGCTACAACACGTCATCA
TACGATAGGTTGCGTGATGTGATGGTACTCTTGTTGTCTACAGAGTACGC
GACCACCACTTGAGAACCTCCTTTTTTCGCTTACCCTGTTTTGTGTTTTC
CTCTGTTTATCATCAACAGCTACCAATGCTTGTAGTTTTGGTATTGACAC
CGGATGACGTTCAGGTTCTAATGTTTTGACAGTTTCGAACCGTATATTTG
TAAATTTCAACTACCATTAGCGCCGTGTACCATATGTGTAATTGTATGGA
TACCGCCCACCGGCGGATCACCTCCCTACGTGATAAATTTTTGGCATTCA
AACCCCGCCGAGAAGGAGCAAGATGGCACGTACTGTTGTACCACCAAGTG
GATGTGGCGCGCTGCTAGCGCACTTACCGCATGGAGGAATGAATCGCGAA
AGCTCTCGTCACCCGGAGGATGTATTGAACCTACGGCGCATGTTTGCGGG
CATCCAGAGCGAGGCATCTACGGTATCAACAGATTCGCCTTTTTTTATGC
TCTGCTGTCACATGCCCCGTCCTTCTTTTTCGGCTTGTCCCTTCAACTGC
AGAGGTCCAAGTACAGCGGGTTTGATCTCGACGTGGAGCTGCCGATGGAA
TCGGAGAGCCGCAAGTCGGGCAAGGGCGGGCTGGTGAGTTGAACCTAAAG
ACAAGCTGGCTATTAACTACCCAAGGCGACGGCAAGCAACCGGTGGAGCA
GGGTTCCGGAGGGGTACCCGTATCGCCAAGCGTACTCTCCGGTGTTTTCA
TGCACGAAGCCCCTTCCGACGTACCGCACGCCGGATGCACTGGTTGGTAT
GTAGAGCTTGTCGCTTGTCGAGTACATACAGAGGTTGACCGGGCCGACAC
CCGGTGTTTTGCCCTGGGTCGAGCTGATTTCGTTCACAGGAACCGTTTCC
GCGGTGGAACCTCCTTGTTGCCACAGACGTTTTTCAAGAGTTGAGTGTGA
TTGTGTATCAAACGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGTTTATCCCGGCACTGGCCTGTCCTTCTCCTTAGGCGCGTCGC
TCTTCATGCTGTTCGTATTTCGTGATATAACTTCGCGACGAGCGAGGAGG
TCTTCGTGCATCTTCGTGCATGGTTGTCACCAACACACTCATTTTTTTCG
TGAATATCCTTTGTCGCGTCCACTACTGCTGTCGCCATTCACGCTGTCCT
TGGCGTATCTCCAGGGCTCCGTGATGAGCCCCGACGGCGTGATGCCACTC
CCTGACTTCCGCGAACTGGCCAAGAAGCCCCGCAAGAAGGACCGAGAGCA
ACAGGCTACCAACGTGAGAAACGGAGAAATCATTGGCTGCGCTTTCGAGG
ACATGTATTGGTTGCAATGAAACAGAGGGGGAGTTGTGTGATGTTTTCCT
TGGCGATTGATCGAAGGGGGACAAAATCGGCCTGACGGACATATTCTGAC
CATTAATGATAGACAGAACCTCTGCGAATTAGTATTTTGATCGATTGATG
GACTGGAGCCGCGATGTCGTTTCGTCGATGATTTTTACGTTGTGCATTCA
TTTATCACGCAACTACGTGGAAGTTGAAGGTTGAGTACCCCTACTAAAAG
AACGCGTACACACAGCATACGCTAACGGTTTGTTGTTGCGCGTAAAGCAA
TCGAATCGTTGTCAGGTTCATAGCAGTGTGTGGTGTTCGGAGGGCTAGTT
TGGCCACTATTGATTGTCCTGTACTTTTCCTCCTGTCGAAGAATGTCGTT
TCTCGAGCAGAGTTGGATCTCATCACTCAATAGTACTGACTTCCGGTGCC
GTGTGGTGCACTGCTGTACCGTGTGCCTTAATCATGAAGGTGGATGAGGC
CAACAAGGTGGAGCGTGGCAACATGGCAGCGTTCACGAAGCTTTTGGAGC
TCGACCCTGAGGCAGACAGCGAGGAGGCTCTCTTCACGACCGAATCGTGA
GAAATTCAAGTATGGGTTTGTTCCGTGGAAAACGCAGCGGAACGCAGCCC
CTTAGCTTGGTACTTGTAGTATTAAGTATCTGGAACCATTTATGGTATTT
TGCTGGCATGCCATATGTTTCCTACGTGACGATGTTGTCTCCTCTGCTGA
TTGGGCTGCAATCCAAGGCTACGTGCATGTACTCCACCTGTAGTCTCGTG
TCTTGTGTCATGCCCACGGCAGACAAGAACTTTTCGCGCTTGGTTTGCTC
CACCATCCTCGCCTCAATCTAGTCTACCTAGTACCGGAGTGGAGTGCTCC
ACGTAGTAGAAACGAAACAGTTTTAGTAATTGATGTTGTACAACGTGAAA
GCTACTACCGGTGCATTGCTGTCGTACAGCTAGCAACAAATGTTTCAATA
TCATGTCGACAAGCAACTCTATCCGGAATATCCAGGGACTGGGAAATAGA
AATCACGTAAAAATATGTGTTAAGCCTGGGATTCGAACCAACAACTCGGA
CCGCCTTGGTAGCAACCGAAATCAATCCGTTGGACCAGTCATCGCTGACG
GCCCTTGACGACCCGTGTACAAGGAAAGAGGAGAGTGAGAGTTTTGTACG
GCTGGTGTTATCTTAAGCGCACTGTGACGTGGATGTACAAAGAACATAGA
TTATTGTGGAATAGCACTTTTGTACTTCATGTTCTTGGAAGCAATAAAAT
TTGATTCGCAGCATATGAGAATTGGATAACTGCCAGCGTTCATCAACTGC
CAGCGTTCGTCAACTGAATAAGACACCGGAGCTTCGGAAGCCGCTGATGT
GGTCACTCCACGGCGTTTGTGTTTACCTTCGAAGGTACGACGCATTCTCA
AGCGTCCTCGGCGAGGGGAAGCCCTTCGTGGGCATCGCAAACTCGTACCT
GCAGTCGGGGCATACGGTACTGCTGGCCCTTGTGCTGCTGTGTGGCTTCA
TCGAGGTCCCAGGGTTCCCTTTGACTTCACTACCGTACGACGTGCGCGAA
TTCCTGAAGGTGCGTGGGGTTTTTGCGAAACGTGTAGAAACGACGTGATT
GAGCCACCACATTCCGCCGCTCTTTTATGCCAACGCTTTCGTGGGAGCCC
TAAGGTTGTTGTGTGGCGAGGGGGGCGCACGTCGGGATGGAAGTGTAACC
ACCTGTCATCGCTATCGCACGACGAGCCACGGGTCCCTCAACAGATGCGG
TGCTTGTCGGGGGTCAATAGCAGCTCTCGCTTTCTTCTTTGCGAGGCGTT
CACGGAAAAGTTTTTCACGCGTACATTCTTGTGACGCTGGGATAAAACCC
TGCTCGTGCTCCCCAAGTAGGATGATGCATCGCTTGATCGCTTGACTCCT
GTTGCTTTGTTGAAAGGTGCGGTGGCTGGGCATCGCCGTGTTCTCTCCCA
TATCTTGGCCACGTTTTGTCCCGTTGTGAGCTCGAGGCGTTTGTTGTGGT
GGGACTGTGCACATAGCATCCCGTTGTGCGCTGATTTCTGTTGGTGACTT
TGAGGGAACTGTTGTTCTTCCAACACAGTAGTCTAAACCCAGCTAAGTTA
CCCCCTCCGCACCCTGCGTCCAGCGTTACCTCGGGCCGACCCTGACCATG
TCCTCATGTTGTCCTCCATCTGTTTTGTTGTGCGTGTCCGAAGACGGGGT
TGCTTGTTACATACGTCATCAACGCCGGCATCGCCTATCTCAGCTATCTA
GAGGCCAAGAGGATAGGACAGGTACAGCAGGACATACGCCTGAACTATGG
TAGACGCTAGGGCTCGTGCCTGTGGATGTGATGGTTTGCTCTCGGCAACA
TTCGTGTCATGTAGCATGGCCTTTTTCAGCACATATACCGAACATGCGTA
CACATATCTTGTGGCTGGTACAGTACGTGGTGGATACTGGAGTGGGATCG
TGTTTGCTTTTTGAAGCTGCAACTCATGTTTGAGTGGCCGAATACACCTC
CCTTCCTTGCGTCGTGCTGAACGAGAAACGTATTCGATCGCCTTTGGACA
CGCGGCGAATATCTTGTCGCCTTGGTTATTCTGGACGCGCGACGATTAGT
GTGATGAGCAAGGACCAGATTTTAACCGGAGTTGCCCCTGGGGGCATAGC
GAGTTTCAGAAGCCGTTGTCTTGGAACTGGACACGGTAGGGGAGGGGCAC
CAGGCATGCGTGCACATGGGCTCATCCGGAACCCTCCCGCTTGTATGCCC
ACCAACTTCGTTCAAGCGCGAGTAAAGCCCCAATTTTTCACGACGACGTG
CTTCGTTTTGCCTCGTACGCTCGCTGTTGTCCCTCATCGCATGCAGCCCG
CCGGTTTCTGGGCCGTGAAAGGGTTCGTATTGGGAGGGCTATCTTTCAAC
GAGCTAAGCCAGATCGAGCCTGTAAAGGTCAAGCCAACGGGAGGCAGAGA
ACGCCGGGGCTAGGATAAGGTGGTCAGTTTAGGCTCGTGGTTGGTGGGCG
GCGAAGCTCGATATATGGGCGGGCTGAACTCGTGTCCTATAAGTGGTTTC
TGCCGATTGCGTAGCTTTGATACCGCAAGCCTCGGTCACCTGCTTTGCCA
GTGAGTTGGGGTCTTGGGGCTAGGAGACCTGTGTCCTAGGTTGCTGCCGA
TTGCGTAGATCTCATTCCTCAAGCCTCAGCCACCTGCTTTGCTGGGGATT
TGGGGTCTTGGGGCTGTAGGCAGGCGATCGATTGAAAGGCGCGAACCACG
TCTTGTGTGTAGCGGTGGCCAGGCTTTCGGGTCGGCGTTTCCACTGCTAT
CTGTGAACATAGAAGGCTCTTTGCCCGGTGCAACAACGGGCATTCCACTG
CTATTTGTTAACGTAGAAGGCTCTTGCCTGGTGCAGTTTCCACTGGTACT
TGTGAACGTAGAAGGCTCTTTGCTTGGTGTAGCATAGCGGAGGCAGCTGC
CATGAGGAGTGTTGACAACACGGCGTCTTCGAAGAACTTCTGCGAAGAAA
CACACGGGGGAGGAAAAACTACAACAACGTCGCTGACCGCCTGTAGATCA
GAGCCGTAGTGGGAGAGGGTATGGGGGTCGTCACTCTCTGCTAATCGCGC
GGCAATCAGTGAACTTGTACGGTTGCCTCCAGAATGCTATGCCCAGTAGC
TGCTGTAGGCGAGCTCGGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig594:7016..14584+

>mRNA_Ecto-sp13_S_contig594.16488.1 ID=mRNA_Ecto-sp13_S_contig594.16488.1|Name=mRNA_Ecto-sp13_S_contig594.16488.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1194bp|location=Sequence derived from alignment at Ecto-sp13_S_contig594:7016..14584+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCCCGGTCCAAGATTTACGGAGCCTTGAGCTTCATGGTGGTCCTGCA
TGATGGTAGCGGCTTCCTGAGGCCTGTGCTACAGACAACAACGAGCGACT
TGGCATTGCTGTCGCGATCAGGTCTCCGGAGGACCGGCTGCGTCAAGCGA
ACATCTTCATCCAACCTCGGCGTTGCCCTATCACGGTCTTGCCTCTCCAG
GAGTGAACGAGGCGGCATTGCGATGATGGCCAAGAAGCGGCGAAGGCGGA
GAGTAGACGGAGAGCAATCAGCAGCGAAAACCCCGCCGAAACCAGCCGCA
CCCGAACCCGAGGTGGACGTGGACGGGGAAGATGAAGATGAGGGTGGGGT
TGTGATGCCGCCGATGCCATCGGAATTGGGGGTGGACGCCGTGATGACCG
CACAGAAGTTCCAAGGCGAAGACATGCTGTCGCCAGCAGCGTTCCAGCCG
AAGCCGGAGGTGTCCGACCTGGAGATGGCCGGTGGGGAAGGGCTCAGCGC
CAGGGATCTCCTGGACGAACCTTCCACCGAACGAAAGAGGTCCAAGTACA
GCGGGTTTGATCTCGACGTGGAGCTGCCGATGGAATCGGAGAGCCGCAAG
TCGGGCAAGGGCGGGCTGGGCTCCGTGATGAGCCCCGACGGCGTGATGCC
ACTCCCTGACTTCCGCGAACTGGCCAAGAAGCCCCGCAAGAAGGACCGAG
AGCAACAGGCTACCAACGTGGATGAGGCCAACAAGGTGGAGCGTGGCAAC
ATGGCAGCGTTCACGAAGCTTTTGGAGCTCGACCCTGAGGCAGACAGCGA
GGAGGCTCTCTTCACGACCGAATCGTACGACGCATTCTCAAGCGTCCTCG
GCGAGGGGAAGCCCTTCGTGGGCATCGCAAACTCGTACCTGCAGTCGGGG
CATACGGTACTGCTGGCCCTTGTGCTGCTGTGTGGCTTCATCGAGGTCCC
AGGGTTCCCTTTGACTTCACTACCGTACGACGTGCGCGAATTCCTGAAGA
CGGGGTTGCTTGTTACATACGTCATCAACGCCGGCATCGCCTATCTCAGC
TATCTAGAGGCCAAGAGGATAGGACAGCCCGCCGGTTTCTGGGCCGTGAA
AGGGTTCGTATTGGGAGGGCTATCTTTCAACGAGCTAAGCCAGATCGAGC
CTGTAAAGGTCAAGCCAACGGGAGGCAGAGAACGCCGGGGCTAG
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