mRNA_Ecto-sp13_S_contig5933.16476.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5933.16476.1
Unique NamemRNA_Ecto-sp13_S_contig5933.16476.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig5933.16476.1 vs. uniprot
Match: A0A6H5JN47_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN47_9PHAE)

HSP 1 Score: 142 bits (359), Expect = 2.010e-37
Identity = 82/130 (63.08%), Postives = 93/130 (71.54%), Query Frame = 1 
Query:   16 FFLVCSERDPSLGEPPPATSNAAVRAELGIQSLRTGRHARKLTWQCRMCRMGEERWPRIA*EATWANK-RGRQPTEWDKVV-GDVWECFVIDEDDTLDTEGLTGSRRRCLLLLPRE-NKI*QKQPRTRRV 396
              L CS+R          TSNAA+RAELGIQSLR+GR ARKLTWQ RMC MGEER PRI  EA WANK RGRQPTEW KVV  DVW+ F IDED+TL+TEGL G + +  +L+ RE N+I  K PR RRV
Sbjct:  154 IVLGCSKR----------TSNAAIRAELGIQSLRSGRDARKLTWQYRMCGMGEERLPRIVWEAKWANKKRGRQPTEWVKVVEDDVWKGFDIDEDETLETEGLKGFKEKVSVLVSREKNRIEGKNPRIRRV 273
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BLAST of mRNA_Ecto-sp13_S_contig5933.16476.1 vs. uniprot
Match: A0A6H5JE92_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE92_9PHAE)

HSP 1 Score: 133 bits (334), Expect = 2.610e-34
Identity = 73/102 (71.57%), Postives = 77/102 (75.49%), Query Frame = 1 
Query:   19 FLVCSERDPSLGEPPPATSNAAVRAELGIQSLRTGRHARKLTWQCRMCRMGEERWPRIA*EATWAN-KRGRQPTEWDKVVGDVWECFVIDEDDTLDTEGLTG 321
             L CS+R          TSNAAVRAELGIQSLR+GR ARKLTWQ RMC MGEER PRIA EA WAN KRGRQPTE  KVVGDVW+ F IDED+ LDTEGL G
Sbjct:   97 ILGCSKR----------TSNAAVRAELGIQSLRSGRDARKLTWQYRMCGMGEERLPRIAWEAKWANNKRGRQPTECVKVVGDVWKGFEIDEDNALDTEGLKG 188
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BLAST of mRNA_Ecto-sp13_S_contig5933.16476.1 vs. uniprot
Match: A0A6H5KPL5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPL5_9PHAE)

HSP 1 Score: 128 bits (322), Expect = 6.650e-34
Identity = 67/96 (69.79%), Postives = 73/96 (76.04%), Query Frame = 1 
Query:   49 LGEPPPATSNAAVRAELGIQSLRTGRHARKLTWQCRMCRMGEERWPRIA*EATWANK-RGRQPTEWDKVVGDVWECFVIDEDDTLDTEGLTGSRRR 333
            LG     TSNA VRAELGIQSLR+G  ARKLTWQ RMC MGEER PRI  EA WANK RGRQPTEW KVV DVW+   IDED+TL+TEGL G + +
Sbjct:    8 LGGCSKRTSNATVRAELGIQSLRSGGDARKLTWQYRMCGMGEERLPRIVWEAKWANKKRGRQPTEWVKVVEDVWKGLDIDEDETLETEGLQGFKEK 103
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BLAST of mRNA_Ecto-sp13_S_contig5933.16476.1 vs. uniprot
Match: A0A6H5KNB0_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNB0_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 8.470e-34
Identity = 70/103 (67.96%), Postives = 76/103 (73.79%), Query Frame = 1 
Query:   16 FFLVCSERDPSLGEPPPATSNAAVRAELGIQSLRTGRHARKLTWQCRMCRMGEERWPRIA*EATWAN-KRGRQPTEWDKVVGDVWECFVIDEDDTLDTEGLTG 321
              L CS+R          TSNA+VRAELGIQSLR+GR ARKLTWQ RMC MGEER PRI  EA WAN KRGRQPTEW KVV DVW+   IDED+TL+TEGL G
Sbjct:   19 IILGCSKR----------TSNASVRAELGIQSLRSGRDARKLTWQYRMCEMGEERLPRIVWEAKWANYKRGRQPTEWIKVVEDVWKGLDIDEDETLETEGLQG 111
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BLAST of mRNA_Ecto-sp13_S_contig5933.16476.1 vs. uniprot
Match: A0A6H5JSP2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSP2_9PHAE)

HSP 1 Score: 132 bits (331), Expect = 1.080e-33
Identity = 70/107 (65.42%), Postives = 78/107 (72.90%), Query Frame = 1 
Query:   16 FFLVCSERDPSLGEPPPATSNAAVRAELGIQSLRTGRHARKLTWQCRMCRMGEERWPRIA*EATWANK-RGRQPTEWDKVVGDVWECFVIDEDDTLDTEGLTGSRRR 333
              L CS+R          TSNAAVR ELGIQSLR+GR ARKLTWQ RMC MGEER P+I  EA WANK RGRQPTEW KVV DVW+ F IDED+TL+TEGL G + +
Sbjct:    6 IILGCSKR----------TSNAAVRTELGIQSLRSGRDARKLTWQYRMCGMGEERLPKIVWEAKWANKTRGRQPTEWVKVVEDVWKGFDIDEDETLETEGLKGFKEK 102
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BLAST of mRNA_Ecto-sp13_S_contig5933.16476.1 vs. uniprot
Match: A0A6H5K736_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K736_9PHAE)

HSP 1 Score: 132 bits (331), Expect = 1.260e-33
Identity = 71/107 (66.36%), Postives = 77/107 (71.96%), Query Frame = 1 
Query:   16 FFLVCSERDPSLGEPPPATSNAAVRAELGIQSLRTGRHARKLTWQCRMCRMGEERWPRIA*EATWANK-RGRQPTEWDKVVGDVWECFVIDEDDTLDTEGLTGSRRR 333
              L CS R          TSNAAVRAELGIQSLR+GR ARKLTWQ RMC MGEER PRI  EA WANK RGRQPTEW KVV DVW+   IDED+TL+TEGL G + +
Sbjct:  111 IILGCSRR----------TSNAAVRAELGIQSLRSGRDARKLTWQYRMCGMGEERLPRIVWEAKWANKKRGRQPTEWVKVVEDVWKGLDIDEDETLETEGLQGFKEK 207
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BLAST of mRNA_Ecto-sp13_S_contig5933.16476.1 vs. uniprot
Match: A0A6H5JNH9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNH9_9PHAE)

HSP 1 Score: 130 bits (327), Expect = 1.290e-33
Identity = 70/107 (65.42%), Postives = 77/107 (71.96%), Query Frame = 1 
Query:   16 FFLVCSERDPSLGEPPPATSNAAVRAELGIQSLRTGRHARKLTWQCRMCRMGEERWPRIA*EATWANK-RGRQPTEWDKVVGDVWECFVIDEDDTLDTEGLTGSRRR 333
              L CS R          TSNAAVRAELGIQSLR+GR ARKLTWQ RMC MGEER PRI  EA WANK RGRQPTEW KVV DVW+   IDED++L+TEGL G + +
Sbjct:   72 IILGCSRR----------TSNAAVRAELGIQSLRSGRDARKLTWQYRMCGMGEERLPRIVWEAKWANKKRGRQPTEWVKVVEDVWKGLDIDEDESLETEGLQGFKEK 168
[Close]
BLAST of mRNA_Ecto-sp13_S_contig5933.16476.1 vs. uniprot
Match: A0A6H5J9I5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9I5_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 4.110e-33
Identity = 71/102 (69.61%), Postives = 76/102 (74.51%), Query Frame = 1 
Query:   19 FLVCSERDPSLGEPPPATSNAAVRAELGIQSLRTGRHARKLTWQCRMCRMGEERWPRIA*EATWANK-RGRQPTEWDKVVGDVWECFVIDEDDTLDTEGLTG 321
             L CS+R          TSNAAVRAELGIQSLR+GR ARKLTWQ RMC MGEER PRI  EA WANK RGRQPTEW KVV DVW+   IDED+TL+TEGL G
Sbjct:  113 ILGCSKR----------TSNAAVRAELGIQSLRSGRDARKLTWQYRMCGMGEERLPRIVWEAKWANKKRGRQPTEWVKVVEDVWKGLDIDEDETLETEGLQG 204
[Close]
BLAST of mRNA_Ecto-sp13_S_contig5933.16476.1 vs. uniprot
Match: A0A6H5JBG4_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBG4_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 4.850e-33
Identity = 67/89 (75.28%), Postives = 73/89 (82.02%), Query Frame = 1 
Query:   70 TSNAAVRAELGIQSLRTGRHARKLTWQCRMCRMGEERWPRIA*EATWANK-RGRQPTEWDKVVGDVWECFVIDEDDTLDTEGLTGSRRR 333
            TSNAAVRAELGIQSLR+GR ARKLTWQ RMC MGEER PRI  EA WANK RGRQPTEW KVV DVW+   IDED+TL+TEGL G + +
Sbjct:  162 TSNAAVRAELGIQSLRSGRDARKLTWQYRMCGMGEERLPRIVWEAKWANKKRGRQPTEWVKVVEDVWKGLDIDEDETLETEGLQGFKEK 250
[Close]
BLAST of mRNA_Ecto-sp13_S_contig5933.16476.1 vs. uniprot
Match: A0A6H5L0Q0_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0Q0_9PHAE)

HSP 1 Score: 133 bits (334), Expect = 5.050e-33
Identity = 71/112 (63.39%), Postives = 80/112 (71.43%), Query Frame = 1 
Query:    1 VGSKHFFLVCSERDPSLGEPPPATSNAAVRAELGIQSLRTGRHARKLTWQCRMCRMGEERWPRIA*EATWANK-RGRQPTEWDKVVGDVWECFVIDEDDTLDTEGLTGSRRR 333
            + + +  L CS R          TSNAAVRAELGIQSLR+GR ARKLTWQ RMC MGEER PRI  EA WANK RGRQPTEW KVV DVW+   IDED+TL+TEGL G + +
Sbjct:   77 IKAANIILGCSRR----------TSNAAVRAELGIQSLRSGRDARKLTWQYRMCGMGEERLPRIVWEAKWANKKRGRQPTEWVKVVEDVWKGLDIDEDETLETEGLQGFKEK 178
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5933.16476.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JN47_9PHAE2.010e-3763.08Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JE92_9PHAE2.610e-3471.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KPL5_9PHAE6.650e-3469.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KNB0_9PHAE8.470e-3467.96Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JSP2_9PHAE1.080e-3365.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K736_9PHAE1.260e-3366.36Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JNH9_9PHAE1.290e-3365.42Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J9I5_9PHAE4.110e-3369.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JBG4_9PHAE4.850e-3375.28Reverse transcriptase domain-containing protein (F... [more]
A0A6H5L0Q0_9PHAE5.050e-3363.39Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5933contigEcto-sp13_S_contig5933:775..1626 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size854
Hectar predicted targeting categoryother localisation
Exons1
Cds size198
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463824.984737-CDS-Ecto-sp13_S_contig5933:774..9721681463824.984737-CDS-Ecto-sp13_S_contig5933:774..972Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5933 775..972 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463824.997375-UTR-Ecto-sp13_S_contig5933:972..16261681463824.997375-UTR-Ecto-sp13_S_contig5933:972..1626Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5933 973..1626 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5933.16476.1prot_Ecto-sp13_S_contig5933.16476.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5933 775..972 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5933.16476.1

>prot_Ecto-sp13_S_contig5933.16476.1 ID=prot_Ecto-sp13_S_contig5933.16476.1|Name=mRNA_Ecto-sp13_S_contig5933.16476.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=66bp
VGSKHFFLVCSERDPSLGEPPPATSNAAVRAELGIQSLRTGRHARKLTWQ
CRMCRMGEERWPRIA*
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mRNA from alignment at Ecto-sp13_S_contig5933:775..1626+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5933.16476.1 ID=mRNA_Ecto-sp13_S_contig5933.16476.1|Name=mRNA_Ecto-sp13_S_contig5933.16476.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=852bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5933:775..1626+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTGGGATCAAAGCACTTTTTCCTTGTTTGCTCGGAGAGAGATCCGTCTCT
TGGAGAGCCCCCCCCCGCCACAAGTAATGCAGCCGTCAGGGCAGAACTGG
GGATCCAATCCCTACGAACGGGACGACATGCAAGGAAGCTGACATGGCAG
TGTCGCATGTGCCGCATGGGAGAGGAAAGGTGGCCTAGAATAGCCTGAGA
GGCGACGTGGGCAAACAAGAGGGGTAGACAACCCACGGAGTGGGACAAGG
TTGTAGGTGACGTATGGGAATGTTTCGTAATTGACGAAGACGATACGCTG
GATACGGAGGGTCTAACGGGTTCCAGGAGAAGATGTCTGCTGCTTTTACC
GAGAGAGAACAAAATCTAACAAAAGCAACCAAGGACAAGGAGGGTATAGA
AGTGCACGGAACGTTGAAAGAATAGGGTTCAAGGAGTACCGTGCCGGAAT
GAATTTCTATTGGCCAATTCCCCCGGCCCAACGCTGCATCATTGCACCAC
CCCCCCACTAGTGATGACGTACCATTACAATGGATCGCTGGTTGGTGGCT
ATGTTTGCGTGTTTGCTTGTTAGTTAGTGGTCTCTCCACCGTGTGCCTTT
TTTTGTCTCTTGTTTCTTGCTATTTTCGGCCTGGTTGTTTTTTGCCCTCG
CTCTTGTTCAATTTGGTTTCTCTTTTCCTCTCTTTTTTTCTCTCTTTTCC
TGTGCCAGATGGCCTTGTCTCTGGTTGCGTTCTGAAGTACCGAGATTGAA
CAAAGGGGGTGTACCTCTTTCTCTCCGGCCCGTGATGGTGACTCCCAGTC
TCAGTTGTTACCTCGCGTACAGTTCTATCAAGTGGGTCGTTTTTTTGGGG
TG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5933:775..1626+

>mRNA_Ecto-sp13_S_contig5933.16476.1 ID=mRNA_Ecto-sp13_S_contig5933.16476.1|Name=mRNA_Ecto-sp13_S_contig5933.16476.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=198bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5933:775..1626+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTGGGATCAAAGCACTTTTTCCTTGTTTGCTCGGAGAGAGATCCGTCTCT
TGGAGAGCCCCCCCCCGCCACAAGTAATGCAGCCGTCAGGGCAGAACTGG
GGATCCAATCCCTACGAACGGGACGACATGCAAGGAAGCTGACATGGCAG
TGTCGCATGTGCCGCATGGGAGAGGAAAGGTGGCCTAGAATAGCCTGA
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