mRNA_Ecto-sp13_S_contig5933.16475.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5933.16475.1
Unique NamemRNA_Ecto-sp13_S_contig5933.16475.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5933.16475.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5933contigEcto-sp13_S_contig5933:48..752 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size705
Hectar predicted targeting categorysignal anchor
Exons1
Cds size426
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463824.8941932-UTR-Ecto-sp13_S_contig5933:47..871681463824.8941932-UTR-Ecto-sp13_S_contig5933:47..87Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5933 48..87 +
1681463824.912259-UTR-Ecto-sp13_S_contig5933:513..7521681463824.912259-UTR-Ecto-sp13_S_contig5933:513..752Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5933 514..752 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463824.9034412-CDS-Ecto-sp13_S_contig5933:87..5131681463824.9034412-CDS-Ecto-sp13_S_contig5933:87..513Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5933 88..513 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5933.16475.1prot_Ecto-sp13_S_contig5933.16475.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5933 88..513 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5933.16475.1

>prot_Ecto-sp13_S_contig5933.16475.1 ID=prot_Ecto-sp13_S_contig5933.16475.1|Name=mRNA_Ecto-sp13_S_contig5933.16475.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=142bp
MRSELCSAKLAFLAVILCFVFPPCFVLFYCVFVPPVCAIPPLRVLSGRVR
VRPINCRFFFGHFCGQFSFSLEVVFLQDYLPESRCRSGGRFLVMMLAFVN
FWSKNACVCRLYLLFSATKKERVWSKNFLSCPPPSPAESVR*
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mRNA from alignment at Ecto-sp13_S_contig5933:48..752+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5933.16475.1 ID=mRNA_Ecto-sp13_S_contig5933.16475.1|Name=mRNA_Ecto-sp13_S_contig5933.16475.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=705bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5933:48..752+ (Ectocarpus species13 EcNAP12_S_4_19m)
TAGTAGGCAGGAAGCTTCAGTTTCGTTTACGTCTGTTGTTATGCGTTCAG
AGTTGTGCTCTGCAAAACTTGCGTTTCTCGCGGTTATTTTGTGTTTTGTC
TTCCCCCCCTGTTTTGTGTTGTTTTATTGTGTTTTCGTTCCACCAGTCTG
TGCTATTCCTCCTCTTCGAGTTCTCTCAGGAAGGGTCCGCGTCCGTCCAA
TAAACTGTCGCTTCTTCTTCGGACACTTTTGTGGGCAATTTTCTTTTTCT
CTTGAGGTGGTCTTCCTCCAAGATTATTTGCCCGAAAGCAGGTGCAGGAG
TGGTGGTAGATTTCTCGTAATGATGTTGGCCTTTGTGAATTTCTGGTCAA
AAAACGCATGCGTGTGCAGGCTTTACCTTCTTTTCAGCGCCACGAAAAAA
GAAAGAGTGTGGTCGAAAAACTTTCTTTCGTGCCCCCCCCCTTCTCCAGC
AGAATCCGTACGATGAGTGAACGAAGACATTTGAAGCAAAGACGCGGAAT
GCAAGCCTTTCCTTTCTTGGCTGCTGCTGTTGCCTCCGCTATCTTGCCTT
TGCCGTCGACGGCCCGTTGCCACGTGTTTGACCGCGCGGTGTAGATGTGT
TGTTGTGTCACTCACCCAATGTCGGGGGCGGAGGAGGGGCTTCAGCAACC
AAAGTCTGCCCAGGGCACTGCACACACGGCAAAGAGAGAGAGAGGCGTGT
GGGCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5933:48..752+

>mRNA_Ecto-sp13_S_contig5933.16475.1 ID=mRNA_Ecto-sp13_S_contig5933.16475.1|Name=mRNA_Ecto-sp13_S_contig5933.16475.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=426bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5933:48..752+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGTTCAGAGTTGTGCTCTGCAAAACTTGCGTTTCTCGCGGTTATTTT
GTGTTTTGTCTTCCCCCCCTGTTTTGTGTTGTTTTATTGTGTTTTCGTTC
CACCAGTCTGTGCTATTCCTCCTCTTCGAGTTCTCTCAGGAAGGGTCCGC
GTCCGTCCAATAAACTGTCGCTTCTTCTTCGGACACTTTTGTGGGCAATT
TTCTTTTTCTCTTGAGGTGGTCTTCCTCCAAGATTATTTGCCCGAAAGCA
GGTGCAGGAGTGGTGGTAGATTTCTCGTAATGATGTTGGCCTTTGTGAAT
TTCTGGTCAAAAAACGCATGCGTGTGCAGGCTTTACCTTCTTTTCAGCGC
CACGAAAAAAGAAAGAGTGTGGTCGAAAAACTTTCTTTCGTGCCCCCCCC
CTTCTCCAGCAGAATCCGTACGATGA
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