mRNA_Ecto-sp13_S_contig59318.16473.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig59318.16473.1
Unique NamemRNA_Ecto-sp13_S_contig59318.16473.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig59318.16473.1 vs. uniprot
Match: D7FU09_ECTSI (Photolyase 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU09_ECTSI)

HSP 1 Score: 211 bits (538), Expect = 6.240e-65
Identity = 110/144 (76.39%), Postives = 112/144 (77.78%), Query Frame = 1
Query:    1 MEQRYLRWQGWLVRYALGGNGDAAAPTVLLVHGFGASSDQWDR-----------------------------LPLSNVVGGDLAGDAAAAQEGVRLLALDLVGFGHSAKPPLSFSQYSWADCARDVALRVGGGPFYIAGNSIGG 345
            MEQRYLRWQGWLVRYALGG+GDAAAPT LLVHGFGASSDQWDR                             LPLS  VGGDLAGDAAAAQEGVRLLALDLVGFGHSAKPPLSFSQYSWADCARDVALRVGGGPF+IAGNSIGG
Sbjct:   88 MEQRYLRWQGWLVRYALGGSGDAAAPTALLVHGFGASSDQWDRVFEQFSPSXXXXXXXXXXXXXXXXXADGKLPLSGGVGGDLAGDAAAAQEGVRLLALDLVGFGHSAKPPLSFSQYSWADCARDVALRVGGGPFFIAGNSIGG 231          
BLAST of mRNA_Ecto-sp13_S_contig59318.16473.1 vs. uniprot
Match: A0A6H5LA65_9PHAE (Photolyase/cryptochrome alpha/beta domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LA65_9PHAE)

HSP 1 Score: 207 bits (527), Expect = 4.490e-61
Identity = 108/145 (74.48%), Postives = 111/145 (76.55%), Query Frame = 1
Query:    1 MEQRYLRWQGWLVRYALGGNGDAAAPTVLLVHGFGASSDQWDR------------------------------LPLSNVVGGDLAGDAAAAQEGVRLLALDLVGFGHSAKPPLSFSQYSWADCARDVALRVGGGPFYIAGNSIGG 345
            MEQRYLRWQGWLVRYALGG+GDAAAPT LLVHGFGASSDQWDR                              LPLS+ VGGDL GDAAAA EGVRLLALDLVGFGHSAKPPLSFSQYSWADCARDVALRVGGGPF+IAGNSIGG
Sbjct:  354 MEQRYLRWQGWLVRYALGGSGDAAAPTALLVHGFGASSDQWDRVFEQFSPSLSPFSSXXXXXXXXXXXTADGKLPLSDDVGGDLGGDAAAALEGVRLLALDLVGFGHSAKPPLSFSQYSWADCARDVALRVGGGPFFIAGNSIGG 498          
BLAST of mRNA_Ecto-sp13_S_contig59318.16473.1 vs. uniprot
Match: A0A7S2UUB3_9STRA (Hypothetical protein n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UUB3_9STRA)

HSP 1 Score: 116 bits (290), Expect = 6.260e-29
Identity = 57/112 (50.89%), Postives = 71/112 (63.39%), Query Frame = 1
Query:   10 RYLRWQGWLVRYALGGNGDAAAPTVLLVHGFGASSDQWDRLPLSNVVGGDLAGDAAAAQEGVRLLALDLVGFGHSAKPPLSFSQYSWADCARDVALRVGGGPFYIAGNSIGG 345
            +Y +W GWL RYA+GGN D+ AP +LLVHGFGAS +QW              G      +  ++ ALDL+GFGHS KPPL FSQY+W D  RD A ++   PF +AGNSIGG
Sbjct:   46 KYWKWNGWLCRYAVGGNADSQAPPLLLVHGFGASVEQWK-------------GVFEQLSQEYQVYALDLIGFGHSQKPPLCFSQYTWQDQVRDFATQIIQKPFVVAGNSIGG 144          
BLAST of mRNA_Ecto-sp13_S_contig59318.16473.1 vs. uniprot
Match: A0A7S4D640_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D640_HETAK)

HSP 1 Score: 103 bits (258), Expect = 3.350e-26
Identity = 57/115 (49.57%), Postives = 70/115 (60.87%), Query Frame = 1
Query:    1 MEQRYLRWQGWLVRYALGGNGDAAAPTVLLVHGFGASSDQWDRLPLSNVVGGDLAGDAAAAQEGVRLLALDLVGFGHSAKPPLSFSQYSWADCARDVALRVGGGPFYIAGNSIGG 345
            +E +Y RW GWL RY++GG  D   P ++LVHGFGAS +QW  L         L GD        R+ A+D++GFGHSAKP  S+SQYSWA+   D    V  G F IAGNSIGG
Sbjct:    5 VEIKYQRWNGWLTRYSVGGKEDG--PALVLVHGFGASLEQWRGLH------DQLQGDH-------RIYAIDMLGFGHSAKPAFSYSQYSWANQVADFCREVVQGDFIIAGNSIGG 104          
BLAST of mRNA_Ecto-sp13_S_contig59318.16473.1 vs. uniprot
Match: A0A0G4GX81_VITBC (Photolyase/cryptochrome alpha/beta domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4GX81_VITBC)

HSP 1 Score: 107 bits (266), Expect = 1.350e-24
Identity = 55/116 (47.41%), Postives = 70/116 (60.34%), Query Frame = 1
Query:    1 MEQRYLRWQGWLVRYALGGNG-DAAAPTVLLVHGFGASSDQWDRLPLSNVVGGDLAGDAAAAQEGVRLLALDLVGFGHSAKPPLSFSQYSWADCARDVALRVGGGPFYIAGNSIGG 345
            +E RY  W+G+LVRY       D A P VLLVHGFGAS+DQW +               A  Q+   + A+D++GFGHS KP L+F+QY+W    RD  L V  GP+Y+AGNSIGG
Sbjct:  436 LETRYYHWRGFLVRYIKSATQHDPAKPKVLLVHGFGASADQWRKT-------------MAVLQQHYEVFAIDMLGFGHSEKPRLTFTQYTWESLLRDFVLEVVRGPYYVAGNSIGG 538          
BLAST of mRNA_Ecto-sp13_S_contig59318.16473.1 vs. uniprot
Match: A0A7S1EEH2_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1EEH2_HEMAN)

HSP 1 Score: 102 bits (253), Expect = 3.950e-23
Identity = 53/112 (47.32%), Postives = 67/112 (59.82%), Query Frame = 1
Query:   10 RYLRWQGWLVRYALGGNGDAAAPTVLLVHGFGASSDQWDRLPLSNVVGGDLAGDAAAAQEGVRLLALDLVGFGHSAKPPLSFSQYSWADCARDVALRVGGGPFYIAGNSIGG 345
            +Y +WQG +VRYA GGN     P VL VHGFGAS+DQW +                      ++ A+DL+GFGHSAKP +++SQY W D  RD AL V   P Y++GNSIGG
Sbjct:  141 KYFKWQGHMVRYAEGGN--EQGPAVLFVHGFGASADQWHKC-------------IKELGSTHKVYAIDLLGFGHSAKPIVTYSQYLWEDVVRDFALEVVSRPLYLSGNSIGG 237          
BLAST of mRNA_Ecto-sp13_S_contig59318.16473.1 vs. uniprot
Match: A0A7S3BI32_9VIRI (Hypothetical protein (Fragment) n=1 Tax=Prasinoderma singulare TaxID=676789 RepID=A0A7S3BI32_9VIRI)

HSP 1 Score: 96.3 bits (238), Expect = 1.890e-21
Identity = 54/118 (45.76%), Postives = 68/118 (57.63%), Query Frame = 1
Query:    1 MEQRYLRWQGWLVRYAL---GGNGDAAAPTVLLVHGFGASSDQWDRLPLSNVVGGDLAGDAAAAQEGVRLLALDLVGFGHSAKPPLSFSQYSWADCARDVALRVGGGPFYIAGNSIGG 345
            +E RY RW G L+RY +       DA  P ++ VHGFGAS+DQWD          DL  D AA   G R+ A+DL GFGH+ KPP+S++QY W     D    V   P+ +AGNSIGG
Sbjct:  218 IEVRYWRWHGILLRYTMTAPSAGCDADKPPLVCVHGFGASADQWD----------DLMDDMAA--RGRRVFAVDLPGFGHAQKPPISYTQYLWEQSVVDFGRAVVKEPYVVAGNSIGG 323          
BLAST of mRNA_Ecto-sp13_S_contig59318.16473.1 vs. uniprot
Match: I2CPL0_NANGC (Alpha beta hydrolase fold protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CPL0_NANGC)

HSP 1 Score: 94.4 bits (233), Expect = 5.970e-21
Identity = 52/96 (54.17%), Postives = 62/96 (64.58%), Query Frame = 1
Query:   76 PTVLLVHGFGASSDQWDRLPLSNVVGGDLAGDA------AAAQEGVRLLALDLVGFGHSAKPPLSFSQYSWADCARDVALRVGGGPFYIAGNSIGG 345
            PT+LLVHGFGAS+DQW +  L     GD A         A    GVR+ ALDL+GFGHS KP ++++QY W D  RD AL V   PF+IAGNSIGG
Sbjct:    9 PTLLLVHGFGASADQWSKCFLELRRMGDPAHPHFDPAFHARFPRGVRVFALDLLGFGHSEKPSVTYTQYLWQDQVRDFALEVLQSPFFIAGNSIGG 104          
BLAST of mRNA_Ecto-sp13_S_contig59318.16473.1 vs. uniprot
Match: A0A4D9CZF8_9STRA (Photolyase/cryptochrome alpha/beta domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CZF8_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 1.120e-20
Identity = 63/144 (43.75%), Postives = 77/144 (53.47%), Query Frame = 1
Query:    4 EQRYLRWQGWLVRYAL------------GGNGDAA------------APTVLLVHGFGASSDQWDRLPLSNVVGGDLAGDA------AAAQEGVRLLALDLVGFGHSAKPPLSFSQYSWADCARDVALRVGGGPFYIAGNSIGG 345
            E +Y R+ G  VRYA+            GG+G                PT+LLVHGFGAS+DQW +  L     GD A         A    GVR+ ALDL+GFGHS KP ++++QY W D  RD AL V   PF+IAGNSIGG
Sbjct:  561 EFKYWRFHGHNVRYAVSKPHMASGKSGSGGSGPEDQGQVPAEGGGEDVPTLLLVHGFGASADQWSKCFLELRRMGDPAHPHFDPAFHARFPRGVRVFALDLLGFGHSEKPSVTYTQYLWQDQVRDFALEVLQSPFFIAGNSIGG 704          
BLAST of mRNA_Ecto-sp13_S_contig59318.16473.1 vs. uniprot
Match: A0A836C8C6_9STRA (Alpha/Beta hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8C6_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 7.640e-20
Identity = 44/86 (51.16%), Postives = 58/86 (67.44%), Query Frame = 1
Query:   88 LVHGFGASSDQWDRLPLSNVVGGDLAGDAAAAQEGVRLLALDLVGFGHSAKPPLSFSQYSWADCARDVALRVGGGPFYIAGNSIGG 345
            +VHGFG S+DQW R   S +            +   RL A+DL+GFGHSAKPPL++SQY+W+DC RD  L++   PF++AGNSIGG
Sbjct:    1 MVHGFGGSADQWARCFESEL------------RATHRLFAIDLLGFGHSAKPPLTYSQYTWSDCVRDFGLQIVKTPFFVAGNSIGG 74          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig59318.16473.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FU09_ECTSI6.240e-6576.39Photolyase 1 n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
A0A6H5LA65_9PHAE4.490e-6174.48Photolyase/cryptochrome alpha/beta domain-containi... [more]
A0A7S2UUB3_9STRA6.260e-2950.89Hypothetical protein n=2 Tax=Fibrocapsa japonica T... [more]
A0A7S4D640_HETAK3.350e-2649.57Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A0G4GX81_VITBC1.350e-2447.41Photolyase/cryptochrome alpha/beta domain-containi... [more]
A0A7S1EEH2_HEMAN3.950e-2347.32Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]
A0A7S3BI32_9VIRI1.890e-2145.76Hypothetical protein (Fragment) n=1 Tax=Prasinoder... [more]
I2CPL0_NANGC5.970e-2154.17Alpha beta hydrolase fold protein (Fragment) n=1 T... [more]
A0A4D9CZF8_9STRA1.120e-2043.75Photolyase/cryptochrome alpha/beta domain-containi... [more]
A0A836C8C6_9STRA7.640e-2051.16Alpha/Beta hydrolase protein n=1 Tax=Tribonema min... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig59318contigEcto-sp13_S_contig59318:23..475 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score214.2
Seed ortholog evalue3.3e-53
Seed eggNOG ortholog2880.D7FU09
Model size348
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.regulation of endocannabinoid signaling pathway
EggNOG OGsCOG0596@1,KOG1454@2759
Cds size348
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463824.6267927-CDS-Ecto-sp13_S_contig59318:22..1511681463824.6267927-CDS-Ecto-sp13_S_contig59318:22..151Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig59318 23..151 +
1681463824.6393998-CDS-Ecto-sp13_S_contig59318:256..4751681463824.6393998-CDS-Ecto-sp13_S_contig59318:256..475Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig59318 257..475 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig59318.16473.1prot_Ecto-sp13_S_contig59318.16473.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig59318 23..475 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig59318.16473.1

>prot_Ecto-sp13_S_contig59318.16473.1 ID=prot_Ecto-sp13_S_contig59318.16473.1|Name=mRNA_Ecto-sp13_S_contig59318.16473.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=116bp
MEQRYLRWQGWLVRYALGGNGDAAAPTVLLVHGFGASSDQWDRLPLSNVV
GGDLAGDAAAAQEGVRLLALDLVGFGHSAKPPLSFSQYSWADCARDVALR
VGGGPFYIAGNSIGG*
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mRNA from alignment at Ecto-sp13_S_contig59318:23..475+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig59318.16473.1 ID=mRNA_Ecto-sp13_S_contig59318.16473.1|Name=mRNA_Ecto-sp13_S_contig59318.16473.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=453bp|location=Sequence derived from alignment at Ecto-sp13_S_contig59318:23..475+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGCAACGGTACCTCCGCTGGCAGGGCTGGCTGGTGCGGTACGCCCT CGGCGGCAACGGGGACGCCGCCGCGCCCACCGTCCTCCTGGTCCACGGCT TCGGGGCCTCTTCCGACCAGTGGGACCGCGTTTTCGAACAGTTTTCTCCT TCTCCTCCTCCTTCTTCTTCTCCTTCTTCTTCTTCTTCTTCTTCTCCTTC TGCTGCTGCTGCTGCTGCTACTGCTGATGGAAAGTTGCCGCTTTCGAACG TTGTCGGCGGTGACCTCGCCGGTGATGCCGCGGCTGCGCAAGAAGGGGTT AGGCTTCTGGCGCTTGATCTCGTGGGCTTCGGGCACTCGGCGAAGCCTCC GCTGTCCTTCTCCCAGTACTCGTGGGCGGACTGCGCGAGGGACGTTGCTC TGAGGGTCGGCGGGGGACCGTTTTACATCGCCGGCAACTCGATCGGAGGG TGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig59318:23..475+

>mRNA_Ecto-sp13_S_contig59318.16473.1 ID=mRNA_Ecto-sp13_S_contig59318.16473.1|Name=mRNA_Ecto-sp13_S_contig59318.16473.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=348bp|location=Sequence derived from alignment at Ecto-sp13_S_contig59318:23..475+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGCAACGGTACCTCCGCTGGCAGGGCTGGCTGGTGCGGTACGCCCT
CGGCGGCAACGGGGACGCCGCCGCGCCCACCGTCCTCCTGGTCCACGGCT
TCGGGGCCTCTTCCGACCAGTGGGACCGCTTGCCGCTTTCGAACGTTGTC
GGCGGTGACCTCGCCGGTGATGCCGCGGCTGCGCAAGAAGGGGTTAGGCT
TCTGGCGCTTGATCTCGTGGGCTTCGGGCACTCGGCGAAGCCTCCGCTGT
CCTTCTCCCAGTACTCGTGGGCGGACTGCGCGAGGGACGTTGCTCTGAGG
GTCGGCGGGGGACCGTTTTACATCGCCGGCAACTCGATCGGAGGGTGA
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