mRNA_Ecto-sp13_S_contig59152.16445.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig59152.16445.1
Unique NamemRNA_Ecto-sp13_S_contig59152.16445.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig59152.16445.1 vs. uniprot
Match: D7G6V6_ECTSI (Cysteine synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6V6_ECTSI)

HSP 1 Score: 248 bits (634), Expect = 2.250e-79
Identity = 124/126 (98.41%), Postives = 126/126 (100.00%), Query Frame = 1
Query:    1 QVEYLNPGGTSKDRIAASMIKEAEATGDLKQGGTVVEGTSGSTGICLASLCRAKGYRCVIVMPDDQAGEKVELLRTFGAEVIQVRTASIANPDHYINVAARLARERPGYVFMDQFETEANLKAHLA 378
            +VEYLNPGGTSKDRIAASMIKEAEATG+LKQGGTVVEGTSGSTGICLASLCRAKGYRCVIVMPDDQAGEKVELLRTFGAEVIQVRTASIANPDHYINVAARLARERPGYVFMDQFETEANLKAHLA
Sbjct:  102 KVEYLNPGGTSKDRIAASMIKEAEATGELKQGGTVVEGTSGSTGICLASLCRAKGYRCVIVMPDDQAGEKVELLRTFGAEVIQVRTASIANPDHYINVAARLARERPGYVFMDQFETEANLKAHLA 227          
BLAST of mRNA_Ecto-sp13_S_contig59152.16445.1 vs. uniprot
Match: A0A835Z4W8_9STRA (Putative cysteine synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4W8_9STRA)

HSP 1 Score: 182 bits (462), Expect = 5.810e-54
Identity = 88/126 (69.84%), Postives = 104/126 (82.54%), Query Frame = 1
Query:    1 QVEYLNPGGTSKDRIAASMIKEAEATGDLKQGGTVVEGTSGSTGICLASLCRAKGYRCVIVMPDDQAGEKVELLRTFGAEVIQVRTASIANPDHYINVAARLARERPGYVFMDQFETEANLKAHLA 378
            +VE+LNPGGT KDR+AA+MI+ AEA G LK GGTVVEGTSGSTGI LAS+CRA+G+RCVIVMPDDQAGEK  +L T GA V+QV+TA+IA+P+HY+N A R+A E  G VFMDQFET AN   H A
Sbjct:   70 KVEFLNPGGTGKDRLAAAMIEAAEAAGLLKPGGTVVEGTSGSTGISLASICRARGFRCVIVMPDDQAGEKKAMLETLGATVVQVKTAAIASPEHYVNAARRIAAETLGAVFMDQFETSANFNVHYA 195          
BLAST of mRNA_Ecto-sp13_S_contig59152.16445.1 vs. uniprot
Match: A0A7S1UH35_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UH35_9STRA)

HSP 1 Score: 174 bits (442), Expect = 1.100e-51
Identity = 88/126 (69.84%), Postives = 99/126 (78.57%), Query Frame = 1
Query:    1 QVEYLNPGGTSKDRIAASMIKEAEATGDLKQGGTVVEGTSGSTGICLASLCRAKGYRCVIVMPDDQAGEKVELLRTFGAEVIQVRTASIANPDHYINVAARLARERPGYVFMDQFETEANLKAHLA 378
            + E LNPGGT+KDRIA +MI+EAEA+G L+ GG VVEGTSGSTGI LA+ C  +GYRCVI MPDDQA EKV+LLRTFGAEV  VRTA IANP+HY   AA  A   PG VFMDQFET AN +AH A
Sbjct:   58 KAELLNPGGTAKDRIARAMIEEAEASGKLRPGGEVVEGTSGSTGIALAAQCAGRGYRCVIFMPDDQAQEKVDLLRTFGAEVHVVRTAGIANPEHYARKAAAYAEATPGAVFMDQFETLANFRAHYA 183          
BLAST of mRNA_Ecto-sp13_S_contig59152.16445.1 vs. uniprot
Match: A0A7S2RC68_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RC68_9STRA)

HSP 1 Score: 167 bits (424), Expect = 2.400e-48
Identity = 87/134 (64.93%), Postives = 99/134 (73.88%), Query Frame = 1
Query:    1 QVEYLNPGGTSKDRIAASMIKEAEATGDLKQGGTVVEGTSGSTGICLASLCRAKGYRCVIVMPDDQAGEKVELLRTFGAEVIQVRTASIANPDHYINVAARLARERP--------GYVFMDQFETEANLKAHLA 378
            + EYLNPGGT KDRIA +MI+EAE  G L  GGTVVEGTSGSTGI LA+LC  +GYRCVIVMPDDQ+ EK  LLR FGAEV+ VRTASI+NP HY+NVA +LA+           G  F DQFET AN  AH+A
Sbjct:   50 KAEYLNPGGTGKDRIALAMIEEAERRGQLAPGGTVVEGTSGSTGIALAALCACRGYRCVIVMPDDQSPEKQRLLRQFGAEVLVVRTASISNPQHYVNVARKLAKGEEVAGHHLPGGGYFTDQFETLANYHAHVA 183          
BLAST of mRNA_Ecto-sp13_S_contig59152.16445.1 vs. uniprot
Match: A0A4D9DD93_9STRA (PALP domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DD93_9STRA)

HSP 1 Score: 163 bits (413), Expect = 2.580e-46
Identity = 85/125 (68.00%), Postives = 96/125 (76.80%), Query Frame = 1
Query:    1 QVEYLNPGGTSKDRIAASMIKEAEATGDLKQGGTVVEGTSGSTGICLASLCRAKGYRCVIVMPDDQAGEKVELLRTFGAEVIQVRTASIANPDHYINVAARLARERPGY-VFMDQFETEANLKAH 372
            +VEYLNPGGTSKDR+A  MI+EAE  G L  G TV+EGTSGSTGI LASLCRA+GYRC+IVMPDDQA EK  LL+ FGAEV  V+ ASIANP+HY N A   A E     V+MDQFET AN +AH
Sbjct:   87 KVEYLNPGGTSKDRVALRMIQEAEKAGLLHPGSTVIEGTSGSTGIALASLCRARGYRCLIVMPDDQAAEKAHLLKQFGAEVEIVKPASIANPNHYCNRARARAEELGDEAVYMDQFETMANFRAH 211          
BLAST of mRNA_Ecto-sp13_S_contig59152.16445.1 vs. uniprot
Match: A0A6V1K2C6_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1K2C6_HETAK)

HSP 1 Score: 161 bits (407), Expect = 2.110e-45
Identity = 81/124 (65.32%), Postives = 95/124 (76.61%), Query Frame = 1
Query:    1 QVEYLNPGGTSKDRIAASMIKEAEATGDLKQGGTVVEGTSGSTGICLASLCRAKGYRCVIVMPDDQAGEKVELLRTFGAEVIQVRTASIANPDHYINVAARLARERPGYVFMDQFETEANLKAH 372
            + E+LNPGGT KDRIA  MI+E E  G L++GGTVVEGTSGSTGI LA +CRA+GYRCVIVMPDD +  KV+LLR FGAEV  V+ ASIANP H+  VA  LA++  G VFMDQF T  N +AH
Sbjct:  100 KAEHLNPGGTGKDRIALQMIEECEKRGLLREGGTVVEGTSGSTGISLALVCRARGYRCVIVMPDDTSQTKVDLLRMFGAEVKVVKAASIANPKHFCKVAEELAKKIDGAVFMDQFNTGFNYRAH 223          
BLAST of mRNA_Ecto-sp13_S_contig59152.16445.1 vs. uniprot
Match: A0A2R5GHA2_9STRA (Cysteine synthase n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GHA2_9STRA)

HSP 1 Score: 159 bits (402), Expect = 2.200e-45
Identity = 80/122 (65.57%), Postives = 92/122 (75.41%), Query Frame = 1
Query:    7 EYLNPGGTSKDRIAASMIKEAEATGDLKQGGTVVEGTSGSTGICLASLCRAKGYRCVIVMPDDQAGEKVELLRTFGAEVIQVRTASIANPDHYINVAARLARERPGYVFMDQFETEANLKAH 372
            E+LNPGG+SKDR+A S+++EAE  G L  GGTVVEGTSGSTGI LA +CRA+GYRCVI+MPDDQA EK ELL   GAEV  VR ASI N  HY+NVA   A E PG +F +QFE  AN K H
Sbjct:   35 EFLNPGGSSKDRVALSIVEEAEREGRLGPGGTVVEGTSGSTGISLAQVCRARGYRCVIIMPDDQAIEKRELLSRLGAEVELVRPASIVNQGHYVNVARERAAEIPGAIFANQFENMANFKMH 156          
BLAST of mRNA_Ecto-sp13_S_contig59152.16445.1 vs. uniprot
Match: M4BZJ5_HYAAE (PALP domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BZJ5_HYAAE)

HSP 1 Score: 157 bits (396), Expect = 5.530e-44
Identity = 76/124 (61.29%), Postives = 94/124 (75.81%), Query Frame = 1
Query:    1 QVEYLNPGGTSKDRIAASMIKEAEATGDLKQGGTVVEGTSGSTGICLASLCRAKGYRCVIVMPDDQAGEKVELLRTFGAEVIQVRTASIANPDHYINVAARLARERPGYVFMDQFETEANLKAH 372
            + E+LNPGG+SKDR+A  ++++AE  G LK+GGT+VEGTSGSTGI L+ + RA+GYRCVIVMPDDQA EK  LL  FGAEV+ V+ ASI N  HY+N A RLAR+  G  F DQFE  AN  +H
Sbjct:   82 KAEFLNPGGSSKDRVAKKIVEDAERRGLLKEGGTIVEGTSGSTGISLSLMARARGYRCVIVMPDDQAKEKSRLLSQFGAEVVLVKPASIVNAKHYVNEAKRLARKTQGGYFTDQFENTANFDSH 205          
BLAST of mRNA_Ecto-sp13_S_contig59152.16445.1 vs. uniprot
Match: W2RD14_PHYPN (PALP domain-containing protein n=6 Tax=Phytophthora TaxID=4783 RepID=W2RD14_PHYPN)

HSP 1 Score: 157 bits (396), Expect = 7.480e-44
Identity = 74/124 (59.68%), Postives = 94/124 (75.81%), Query Frame = 1
Query:    1 QVEYLNPGGTSKDRIAASMIKEAEATGDLKQGGTVVEGTSGSTGICLASLCRAKGYRCVIVMPDDQAGEKVELLRTFGAEVIQVRTASIANPDHYINVAARLARERPGYVFMDQFETEANLKAH 372
            + E+LNPGG+SKDR+A  ++++AE  G LK+GGT++EGTSGSTGI L+ + RA+GYRC+IVMPDDQA EK +LL  FGAEV+ V+ ASI N  HY+N A RLAR   G  F DQFE  AN  +H
Sbjct:   97 KAEFLNPGGSSKDRVAKGIVEDAERRGLLKEGGTIIEGTSGSTGISLSLMARARGYRCIIVMPDDQAKEKSQLLEQFGAEVVLVKPASIVNAKHYVNEAKRLARNTEGGYFTDQFENTANFDSH 220          
BLAST of mRNA_Ecto-sp13_S_contig59152.16445.1 vs. uniprot
Match: A0A3R7H2M7_9STRA (PALP domain-containing protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7H2M7_9STRA)

HSP 1 Score: 154 bits (389), Expect = 6.260e-43
Identity = 73/126 (57.94%), Postives = 95/126 (75.40%), Query Frame = 1
Query:    1 QVEYLNPGGTSKDRIAASMIKEAEATGDLKQGGTVVEGTSGSTGICLASLCRAKGYRCVIVMPDDQAGEKVELLRTFGAEVIQVRTASIANPDHYINVAARLARERPGYVFMDQFETEANLKAHLA 378
            + E+LNPGG+SKDR+A  ++++AE  G LK+GGT++EGTSGSTGI L+ + RA+GY+CVIVMPDDQA EK +LL  FGA+V+ V+ ASI N  HY+N A RLA+   G  F DQFE  AN  +H A
Sbjct:   84 KAEFLNPGGSSKDRVAKGIVEDAERRGLLKEGGTIIEGTSGSTGISLSLMARARGYKCVIVMPDDQAKEKSQLLEQFGAQVVLVKPASIVNAKHYVNEAKRLAQNTKGGYFTDQFENTANYDSHYA 209          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig59152.16445.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6V6_ECTSI2.250e-7998.41Cysteine synthase n=1 Tax=Ectocarpus siliculosus T... [more]
A0A835Z4W8_9STRA5.810e-5469.84Putative cysteine synthase n=1 Tax=Tribonema minus... [more]
A0A7S1UH35_9STRA1.100e-5169.84Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S2RC68_9STRA2.400e-4864.93Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A4D9DD93_9STRA2.580e-4668.00PALP domain-containing protein n=2 Tax=Monodopsida... [more]
A0A6V1K2C6_HETAK2.110e-4565.32Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A2R5GHA2_9STRA2.200e-4565.57Cysteine synthase n=1 Tax=Hondaea fermentalgiana T... [more]
M4BZJ5_HYAAE5.530e-4461.29PALP domain-containing protein n=1 Tax=Hyaloperono... [more]
W2RD14_PHYPN7.480e-4459.68PALP domain-containing protein n=6 Tax=Phytophthor... [more]
A0A3R7H2M7_9STRA6.260e-4357.94PALP domain-containing protein n=2 Tax=Phytophthor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig59152contigEcto-sp13_S_contig59152:34..849 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score248.4
Seed ortholog evalue1.7e-63
Seed eggNOG ortholog2880.D7G6V6
Preferred namecys12
Model size378
KEGG rclassRC00020,RC02814,RC02821
KEGG koko:K01738
KEGG ReactionR00897,R03601,R04859
KEGG Pathwayko00270,ko00920,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00270,map00920,map01100,map01110,map01120,map01130,map01200,map01230
KEGG ModuleM00021
Hectar predicted targeting categoryother localisation
GOsGO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0004124,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0006082,GO:0006520,GO:0006534,GO:0006790,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009069,GO:0009070,GO:0009987,GO:0016020,GO:0016053,GO:0016740,GO:0016765,GO:0019344,GO:0019752,GO:0019842,GO:0019867,GO:0030170,GO:0031090,GO:0031966,GO:0031967,GO:0031968,GO:0031975,GO:0036094,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046394,GO:0048037,GO:0050662,GO:0070279,GO:0071704,GO:0097159,GO:0098588,GO:0098805,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607
Exons2
EggNOG free text desc.cysteine synthase activity
EggNOG OGsCOG0031@1,KOG1481@2759
Ec32 ortholog descriptionCysteine synthase
Ec32 orthologEc-01_012080.1
EC2.5.1.47
Cds size378
COG Functional cat.E
BiGG ReactioniRC1080.CRv4_Au5_s16_g6345_t1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463822.311904-CDS-Ecto-sp13_S_contig59152:33..2311681463822.311904-CDS-Ecto-sp13_S_contig59152:33..231Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig59152 34..231 +
1681463822.3239105-CDS-Ecto-sp13_S_contig59152:669..8491681463822.3239105-CDS-Ecto-sp13_S_contig59152:669..849Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig59152 670..849 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig59152.16445.1prot_Ecto-sp13_S_contig59152.16445.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig59152 34..849 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig59152.16445.1

>prot_Ecto-sp13_S_contig59152.16445.1 ID=prot_Ecto-sp13_S_contig59152.16445.1|Name=mRNA_Ecto-sp13_S_contig59152.16445.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=126bp
QVEYLNPGGTSKDRIAASMIKEAEATGDLKQGGTVVEGTSGSTGICLASL
CRAKGYRCVIVMPDDQAGEKVELLRTFGAEVIQVRTASIANPDHYINVAA
RLARERPGYVFMDQFETEANLKAHLA
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mRNA from alignment at Ecto-sp13_S_contig59152:34..849+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig59152.16445.1 ID=mRNA_Ecto-sp13_S_contig59152.16445.1|Name=mRNA_Ecto-sp13_S_contig59152.16445.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=816bp|location=Sequence derived from alignment at Ecto-sp13_S_contig59152:34..849+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTGGAGTATCTCAACCCCGGCGGAACAAGCAAGGACAGAATCGCGGC GAGCATGATCAAGGAGGCCGAAGCAACTGGGGACCTGAAACAGGGGGGCA CCGTGGTGGAAGGCACGTCTGGGAGCACGGGAATTTGCCTCGCTTCGCTG TGCAGGGCCAAAGGCTACCGCTGCGTCATCGTAATGCCTGACGATCAGGT GAGAAATGAGGAGCAGCATGAAAGGGAACTCCGCAGGTGCGCGGCCTGAA GTATATGAATATCTTCCACGCTCGTCGGCGTCTCATCTCTTCCTAAAGTA AACAGCTTTATATCGCTGGTTGACGTCCTAGAGTACCGCGCGGCCTTCAA CCGTAGTTTTCAAGAATTGTTTTCCTTTTGCTAGAATGGACGGCACCCAC TCAGGAGCGTTGTCCCAAAAGAGCAGGCGTGTGCCCCCAAGACTTGTGCT TGATGCAATAAGGAGGCTCTTGAAATGTATGGAAGCCGTATGTGTACGGG CGCCAATTTTCGTGCCCTATCCTACCGTCATCATCGGTAGGTTGTTCTTG ATTGTTGCCAGCTGCGGTTATTTACTCAGCCCCTATCGACGTGCGTACAT ACCCCACCATTTTCTACTCTGCATATCCCCCTCAAGGCTGGTGAGAAGGT GGAGCTATTGCGCACCTTCGGTGCTGAGGTGATCCAGGTGAGAACAGCAT CCATCGCCAACCCCGACCACTACATCAACGTCGCCGCACGCTTGGCCCGG GAACGGCCTGGCTACGTGTTCATGGACCAGTTCGAGACGGAGGCTAACCT TAAGGCGCACCTAGCA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig59152:34..849+

>mRNA_Ecto-sp13_S_contig59152.16445.1 ID=mRNA_Ecto-sp13_S_contig59152.16445.1|Name=mRNA_Ecto-sp13_S_contig59152.16445.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=378bp|location=Sequence derived from alignment at Ecto-sp13_S_contig59152:34..849+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTGGAGTATCTCAACCCCGGCGGAACAAGCAAGGACAGAATCGCGGC
GAGCATGATCAAGGAGGCCGAAGCAACTGGGGACCTGAAACAGGGGGGCA
CCGTGGTGGAAGGCACGTCTGGGAGCACGGGAATTTGCCTCGCTTCGCTG
TGCAGGGCCAAAGGCTACCGCTGCGTCATCGTAATGCCTGACGATCAGGC
TGGTGAGAAGGTGGAGCTATTGCGCACCTTCGGTGCTGAGGTGATCCAGG
TGAGAACAGCATCCATCGCCAACCCCGACCACTACATCAACGTCGCCGCA
CGCTTGGCCCGGGAACGGCCTGGCTACGTGTTCATGGACCAGTTCGAGAC
GGAGGCTAACCTTAAGGCGCACCTAGCA
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