mRNA_Ecto-sp13_S_contig59059.16431.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig59059.16431.1
Unique NamemRNA_Ecto-sp13_S_contig59059.16431.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig59059.16431.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig59059contigEcto-sp13_S_contig59059:337..851 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size515
Hectar predicted targeting categoryother localisation
Exons1
Cds size387
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463821.0638938-UTR-Ecto-sp13_S_contig59059:336..3501681463821.0638938-UTR-Ecto-sp13_S_contig59059:336..350Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig59059 337..350 +
1681463821.0849977-UTR-Ecto-sp13_S_contig59059:737..8511681463821.0849977-UTR-Ecto-sp13_S_contig59059:737..851Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig59059 738..851 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463821.075259-CDS-Ecto-sp13_S_contig59059:350..7371681463821.075259-CDS-Ecto-sp13_S_contig59059:350..737Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig59059 351..737 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig59059.16431.1prot_Ecto-sp13_S_contig59059.16431.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig59059 351..737 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig59059.16431.1

>prot_Ecto-sp13_S_contig59059.16431.1 ID=prot_Ecto-sp13_S_contig59059.16431.1|Name=mRNA_Ecto-sp13_S_contig59059.16431.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=129bp
MSPCSWATATFGFVSHHNRYGWLSQRGFAAVGFGDTRDRKHLVPSLADTH
HFHHRTSNKPAATTHQVATGNISSKSTAAMPKVMILGRGTPENLQLASIR
GSKTTETRRRNRLQEGGNQQKGTCTVQQ*
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mRNA from alignment at Ecto-sp13_S_contig59059:337..851+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig59059.16431.1 ID=mRNA_Ecto-sp13_S_contig59059.16431.1|Name=mRNA_Ecto-sp13_S_contig59059.16431.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=515bp|location=Sequence derived from alignment at Ecto-sp13_S_contig59059:337..851+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAGCACGAGTTTCTATGTCTCCCTGCTCATGGGCAACAGCAACCTTCGGT
TTTGTGAGTCATCACAACCGATACGGCTGGCTGTCGCAAAGAGGCTTCGC
CGCTGTCGGTTTCGGGGATACACGTGATCGAAAACACCTCGTCCCATCAC
TCGCAGACACACACCACTTTCACCACCGTACGAGCAACAAACCTGCTGCT
ACCACTCACCAGGTCGCGACAGGCAATATTTCGTCAAAGAGCACCGCCGC
CATGCCTAAAGTAATGATTTTGGGACGAGGCACGCCAGAAAATTTGCAGC
TAGCAAGCATAAGAGGCTCCAAGACAACCGAAACAAGACGGCGAAACCGG
CTGCAAGAGGGTGGGAACCAACAAAAGGGAACATGCACGGTACAGCAGTG
AATGAAACACAACTTGGGCACAGCTAATCAGTGTATGCAAGAGGGTGAGA
ATAAAAATAAGATTCAACTAACCTTTTCGGTGAAGGTGAGCTTGCCGTCC
TTGTTGCCGAAGTCT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig59059:337..851+

>mRNA_Ecto-sp13_S_contig59059.16431.1 ID=mRNA_Ecto-sp13_S_contig59059.16431.1|Name=mRNA_Ecto-sp13_S_contig59059.16431.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=387bp|location=Sequence derived from alignment at Ecto-sp13_S_contig59059:337..851+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCTCCCTGCTCATGGGCAACAGCAACCTTCGGTTTTGTGAGTCATCA
CAACCGATACGGCTGGCTGTCGCAAAGAGGCTTCGCCGCTGTCGGTTTCG
GGGATACACGTGATCGAAAACACCTCGTCCCATCACTCGCAGACACACAC
CACTTTCACCACCGTACGAGCAACAAACCTGCTGCTACCACTCACCAGGT
CGCGACAGGCAATATTTCGTCAAAGAGCACCGCCGCCATGCCTAAAGTAA
TGATTTTGGGACGAGGCACGCCAGAAAATTTGCAGCTAGCAAGCATAAGA
GGCTCCAAGACAACCGAAACAAGACGGCGAAACCGGCTGCAAGAGGGTGG
GAACCAACAAAAGGGAACATGCACGGTACAGCAGTGA
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