mRNA_Ecto-sp13_S_contig59.16416.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp13_S_contig59.16416.1
Unique Name	mRNA_Ecto-sp13_S_contig59.16416.1
Type	mRNA
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)

Homology

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BLAST of mRNA_Ecto-sp13_S_contig59.16416.1 vs. uniprot
Match: D8LQ86_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ86_ECTSI)

HSP 1 Score: 157 bits (396), Expect = 8.620e-43
Identity = 75/78 (96.15%), Postives = 78/78 (100.00%), Query Frame = 2

Query:  200 TKAQGQLREATEIQNLQIGEGDVCRGLVIPVYMVLPRLFSCPTMVTPRFRVEFELNVIVCFAEAEGYTATQNFQILLV 433
            ++AQGQLREATEIQNLQIGEGDVCRGLVIP+YMVLPRLFSCPTMVTPRFRVEFELNVIVCFAEAEGYTATQNFQILLV
Sbjct:  162 SQAQGQLREATEIQNLQIGEGDVCRGLVIPIYMVLPRLFSCPTMVTPRFRVEFELNVIVCFAEAEGYTATQNFQILLV 239

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BLAST of mRNA_Ecto-sp13_S_contig59.16416.1 vs. uniprot
Match: A0A6H5KT71_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT71_9PHAE)

HSP 1 Score: 157 bits (396), Expect = 4.680e-42
Identity = 75/78 (96.15%), Postives = 78/78 (100.00%), Query Frame = 2

Query:  200 TKAQGQLREATEIQNLQIGEGDVCRGLVIPVYMVLPRLFSCPTMVTPRFRVEFELNVIVCFAEAEGYTATQNFQILLV 433
            ++AQGQLREATEIQNLQIGEGDVCRGLVIP+YMVLPRLFSCPTMVTPRFRVEFELNVIVCFAEAEGYTATQNFQILLV
Sbjct:  225 SQAQGQLREATEIQNLQIGEGDVCRGLVIPIYMVLPRLFSCPTMVTPRFRVEFELNVIVCFAEAEGYTATQNFQILLV 302

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BLAST of mRNA_Ecto-sp13_S_contig59.16416.1 vs. uniprot
Match: A0A7S2FUK8_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FUK8_9STRA)

HSP 1 Score: 105 bits (261), Expect = 3.710e-23
Identity = 48/70 (68.57%), Postives = 60/70 (85.71%), Query Frame = 2

Query:  221 REATEIQNLQIGEGDVCRGLVIPVYMVLPRLFSCPTMVTPRFRVEFELNVIVCFAEAEGYTATQNFQILL 430
            REATEIQN+QIG+GDVCR LVIP+YM+ PRLF+CPTM+T  F+VEFE+N+IV FA+  GY  T+NF I+L
Sbjct:  153 REATEIQNIQIGDGDVCRNLVIPLYMIFPRLFTCPTMLTELFKVEFEVNLIVVFAD--GYMVTENFPIVL 220

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BLAST of mRNA_Ecto-sp13_S_contig59.16416.1 vs. uniprot
Match: UPI000BA8120E (Down syndrome critical region protein 3-like n=1 Tax=Limulus polyphemus TaxID=6850 RepID=UPI000BA8120E)

HSP 1 Score: 103 bits (256), Expect = 3.360e-22
Identity = 44/75 (58.67%), Postives = 61/75 (81.33%), Query Frame = 2

Query:  206 AQGQLREATEIQNLQIGEGDVCRGLVIPVYMVLPRLFSCPTMVTPRFRVEFELNVIVCFAEAEGYTATQNFQILL 430
            A+G  R+ATEIQN+QIGEGDVCRG+VIP+YM+ PRLF+CPT++T  F++EFE+N++V F +   +  T+NF I L
Sbjct:  174 AEGYSRDATEIQNIQIGEGDVCRGIVIPIYMIFPRLFACPTLITSNFKIEFEVNIVVVFED--DHLITENFPIKL 246

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BLAST of mRNA_Ecto-sp13_S_contig59.16416.1 vs. uniprot
Match: T1KHU9_TETUR (Uncharacterized protein n=1 Tax=Tetranychus urticae TaxID=32264 RepID=T1KHU9_TETUR)

HSP 1 Score: 103 bits (256), Expect = 8.980e-22
Identity = 45/76 (59.21%), Postives = 61/76 (80.26%), Query Frame = 2

Query:  206 AQGQLREATEIQNLQIGEGDVCRGLVIPVYMVLPRLFSCPTMVTPRFRVEFELNVIVCFAEAEGYTATQNFQILLV 433
            A+G  R+ATEIQN+QIG+GD+CRG+ IP+YM+ PRLFSCPT++T  F++EFE+NVIV F +   +  T+NF I LV
Sbjct:  225 AEGYARDATEIQNIQIGDGDICRGVPIPIYMIFPRLFSCPTLITSNFKIEFEVNVIVIFED--NHLITENFPIKLV 298

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BLAST of mRNA_Ecto-sp13_S_contig59.16416.1 vs. uniprot
Match: F0YB46_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YB46_AURAN)

HSP 1 Score: 102 bits (254), Expect = 1.940e-21
Identity = 47/70 (67.14%), Postives = 57/70 (81.43%), Query Frame = 2

Query:  221 REATEIQNLQIGEGDVCRGLVIPVYMVLPRLFSCPTMVTPRFRVEFELNVIVCFAEAEGYTATQNFQILL 430
            REATEIQN+QI EGDVCR LVIP+YM+ PRLF+CPTM+T  F+VEFE+N+IV F +  GY  T+NF I L
Sbjct:  236 REATEIQNIQIAEGDVCRNLVIPIYMIFPRLFTCPTMITDDFKVEFEVNLIVIFGD--GYMITENFPIKL 303

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BLAST of mRNA_Ecto-sp13_S_contig59.16416.1 vs. uniprot
Match: A0A3S4QC84_9ACAR (Down syndrome critical region protein 3-like protein n=1 Tax=Dinothrombium tinctorium TaxID=1965070 RepID=A0A3S4QC84_9ACAR)

HSP 1 Score: 102 bits (253), Expect = 2.260e-21
Identity = 44/76 (57.89%), Postives = 61/76 (80.26%), Query Frame = 2

Query:  206 AQGQLREATEIQNLQIGEGDVCRGLVIPVYMVLPRLFSCPTMVTPRFRVEFELNVIVCFAEAEGYTATQNFQILLV 433
            A+G  R+ATEIQN+QIGEGDVCRG+ IP+YMV PRLF+CPT++T  F++EFE+N++V F +   +  T+NF I L+
Sbjct:  223 AEGYARDATEIQNIQIGEGDVCRGVPIPIYMVFPRLFTCPTLITCNFKIEFEVNIVVIFED--NHLITENFPIKLI 296

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BLAST of mRNA_Ecto-sp13_S_contig59.16416.1 vs. uniprot
Match: A0A6J1N1U1_BICAN (Down syndrome critical region protein 3 homolog isoform X1 n=3 Tax=Satyrini TaxID=127320 RepID=A0A6J1N1U1_BICAN)

HSP 1 Score: 102 bits (253), Expect = 2.460e-21
Identity = 46/76 (60.53%), Postives = 60/76 (78.95%), Query Frame = 2

Query:  206 AQGQLREATEIQNLQIGEGDVCRGLVIPVYMVLPRLFSCPTMVTPRFRVEFELNVIVCFAEAEGYTATQNFQILLV 433
            A+G  ++ATEIQN+Q+GEGDVCRG  IP++MVLPRLF+CPT  TP F++EFELN+ V F +   Y  T+NF ILL+
Sbjct:  226 AEGYSKDATEIQNIQVGEGDVCRGRDIPLHMVLPRLFTCPTTATPHFKIEFELNIAVVFED--DYLVTENFPILLL 299

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BLAST of mRNA_Ecto-sp13_S_contig59.16416.1 vs. uniprot
Match: A0A835LB67_SPOEX (Uncharacterized protein n=1 Tax=Spodoptera exigua TaxID=7107 RepID=A0A835LB67_SPOEX)

HSP 1 Score: 101 bits (252), Expect = 2.570e-21
Identity = 47/76 (61.84%), Postives = 59/76 (77.63%), Query Frame = 2

Query:  206 AQGQLREATEIQNLQIGEGDVCRGLVIPVYMVLPRLFSCPTMVTPRFRVEFELNVIVCFAEAEGYTATQNFQILLV 433
            A+G  ++ATEIQN+QIGEGDVCR   IP+YMVLPRLF+CPT  TP F++EFELN+ V F +   Y  T+NF ILL+
Sbjct:  210 AEGYSKDATEIQNIQIGEGDVCRARDIPLYMVLPRLFTCPTTTTPHFKIEFELNIAVIFDD--DYLVTENFPILLL 283

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BLAST of mRNA_Ecto-sp13_S_contig59.16416.1 vs. uniprot
Match: UPI000C6D5C96 (Down syndrome critical region protein 3-like n=1 Tax=Centruroides sculpturatus TaxID=218467 RepID=UPI000C6D5C96)

HSP 1 Score: 99.8 bits (247), Expect = 3.460e-21
Identity = 43/75 (57.33%), Postives = 59/75 (78.67%), Query Frame = 2

Query:  206 AQGQLREATEIQNLQIGEGDVCRGLVIPVYMVLPRLFSCPTMVTPRFRVEFELNVIVCFAEAEGYTATQNFQILL 430
            A+G  R+ATEIQN+QIGEGD+CRG+ IP+YMV PRLF+CPT++T  F++EFE+N++V F +      T+NF I L
Sbjct:  145 AEGYSRDATEIQNIQIGEGDICRGIAIPIYMVFPRLFTCPTLITNNFKIEFEVNIVVVFEDDR--LITENFPIRL 217

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig59.16416.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig59.16416.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D8LQ86_ECTSI	8.620e-43	96.15	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5KT71_9PHAE	4.680e-42	96.15	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A7S2FUK8_9STRA	3.710e-23	68.57	Hypothetical protein n=1 Tax=Florenciella parvula ...	[more]
UPI000BA8120E	3.360e-22	58.67	Down syndrome critical region protein 3-like n=1 T...	[more]
T1KHU9_TETUR	8.980e-22	59.21	Uncharacterized protein n=1 Tax=Tetranychus urtica...	[more]
F0YB46_AURAN	1.940e-21	67.14	Uncharacterized protein n=1 Tax=Aureococcus anopha...	[more]
A0A3S4QC84_9ACAR	2.260e-21	57.89	Down syndrome critical region protein 3-like prote...	[more]
A0A6J1N1U1_BICAN	2.460e-21	60.53	Down syndrome critical region protein 3 homolog is...	[more]
A0A835LB67_SPOEX	2.570e-21	61.84	Uncharacterized protein n=1 Tax=Spodoptera exigua ...	[more]
UPI000C6D5C96	3.460e-21	57.33	Down syndrome critical region protein 3-like n=1 T...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig59	contig	Ecto-sp13_S_contig59:792..1774 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Stop	1
Start	1
Seed ortholog score	157.1
Seed ortholog evalue	4.2e-36
Seed eggNOG ortholog	2880.D8LQ86
Preferred name	DSCR3
Model size	983
Hectar predicted targeting category	other localisation
GOs	GO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0008565,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016192,GO:0016197,GO:0016482,GO:0030904,GO:0030906,GO:0031410,GO:0031982,GO:0032991,GO:0033036,GO:0034613,GO:0042147,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0044424,GO:0044425,GO:0044444,GO:0044464,GO:0045184,GO:0046907,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070727,GO:0071702,GO:0071705,GO:0097708,GO:0098796
Exons	1
EggNOG free text desc.	protein transporter activity
EggNOG OGs	KOG2717@1,KOG2717@2759
Cds size	306
COG Functional cat.	DT
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681463819.579132-UTR-Ecto-sp13_S_contig59:791..921	1681463819.579132-UTR-Ecto-sp13_S_contig59:791..921	Ectocarpus species13 EcNAP12_S_4_19m	UTR	Ecto-sp13_S_contig59 792..921 +
1681463819.6141872-UTR-Ecto-sp13_S_contig59:1227..1774	1681463819.6141872-UTR-Ecto-sp13_S_contig59:1227..1774	Ectocarpus species13 EcNAP12_S_4_19m	UTR	Ecto-sp13_S_contig59 1228..1774 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681463819.602974-CDS-Ecto-sp13_S_contig59:921..1227	1681463819.602974-CDS-Ecto-sp13_S_contig59:921..1227	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig59 922..1227 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig59.16416.1	prot_Ecto-sp13_S_contig59.16416.1	Ectocarpus species13 EcNAP12_S_4_19m	polypeptide	Ecto-sp13_S_contig59 922..1227 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp13_S_contig59:792..1774+
coding sequence from alignment at Ecto-sp13_S_contig59:792..1774+

protein sequence of mRNA_Ecto-sp13_S_contig59.16416.1

>prot_Ecto-sp13_S_contig59.16416.1 ID=prot_Ecto-sp13_S_contig59.16416.1|Name=mRNA_Ecto-sp13_S_contig59.16416.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=102bp
MHAERLPKRPLFCALPRTRWHPKTKAQGQLREATEIQNLQIGEGDVCRGL
VIPVYMVLPRLFSCPTMVTPRFRVEFELNVIVCFAEAEGYTATQNFQILL
V*

mRNA from alignment at Ecto-sp13_S_contig59:792..1774+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp13_S_contig59.16416.1 ID=mRNA_Ecto-sp13_S_contig59.16416.1|Name=mRNA_Ecto-sp13_S_contig59.16416.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=983bp|location=Sequence derived from alignment at Ecto-sp13_S_contig59:792..1774+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGTGCAATCCTTGGACTGTGGGAGAAGCGACCAATTTTTTTTTTTTCACC
CTTCATGTCGCAAGCGCGCGCCGCAAACACAACAATCATGTACCACAAAA
CATTTCATCCACTCAGCAAAGACGAGCCCGATGCATGCAGAACGCCTACC
CAAGCGTCCCCTTTTCTGTGCCCTCCCTCGTACCCGGTGGCATCCAAAAA
CAAAGGCGCAAGGCCAGCTGCGGGAGGCGACGGAGATTCAGAACCTCCAG
ATAGGGGAGGGGGACGTGTGCCGAGGCCTGGTGATCCCGGTCTACATGGT
GCTGCCGCGGCTGTTTTCTTGCCCCACGATGGTGACCCCGCGGTTCCGTG
TGGAGTTCGAGCTGAACGTGATCGTCTGCTTCGCGGAGGCGGAGGGTTAC
ACGGCCACGCAGAATTTCCAGATACTGTTGGTTTGAAAGTAAGAATGACG
GAAGAGCGTGAGGGTGATTCGGCCATGAAGAATTTCTAGATGCTGTTGGT
GTATGAGAAAGTGCGAGGGTGGTACGGCCACGCAGAATTTCCAGAAACTG
CTGCTTGTGCGAAATGAGAATGATGCAAGGGTCTGAAGGCGACACGGCCA
CAAAGGAATTCAAGATATGGTTGGTGTGGTGAGGCAAGAGGGTAGGGAAG
GTGACATATGCGAGGATTGTACGGCCTCGCAGAATGTCCAGATAGAGTAG
TTGGTTTGGTGAGAATGACGAAAGAGTGTGAGGGTTATACGACCACGCAG
ACTTTTACAGAAACTGAGAACGAAGAACGAGCGTGACTTGTTCCCTCGAT
TTTGTCTTTCGTTGCTGTTCGTGCCATGCGCCTTCAACCCGTGGCCATGC
CCATACTTGATTGGATGTTGTTGTGAGATACCCCTTCCGAAGTAAGTGAT
GCAACGATGGGGCACCATCGATGTTGTTGGTAAATCCCCCAGGGGTGGAA
ATCGGTTGTTTTGCCTCAAACTGCTGTACGACG

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig59:792..1774+

>mRNA_Ecto-sp13_S_contig59.16416.1 ID=mRNA_Ecto-sp13_S_contig59.16416.1|Name=mRNA_Ecto-sp13_S_contig59.16416.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=306bp|location=Sequence derived from alignment at Ecto-sp13_S_contig59:792..1774+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCATGCAGAACGCCTACCCAAGCGTCCCCTTTTCTGTGCCCTCCCTCG
TACCCGGTGGCATCCAAAAACAAAGGCGCAAGGCCAGCTGCGGGAGGCGA
CGGAGATTCAGAACCTCCAGATAGGGGAGGGGGACGTGTGCCGAGGCCTG
GTGATCCCGGTCTACATGGTGCTGCCGCGGCTGTTTTCTTGCCCCACGAT
GGTGACCCCGCGGTTCCGTGTGGAGTTCGAGCTGAACGTGATCGTCTGCT
TCGCGGAGGCGGAGGGTTACACGGCCACGCAGAATTTCCAGATACTGTTG
GTTTGA