mRNA_Ecto-sp13_S_contig58893.16404.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig58893.16404.1
Unique NamemRNA_Ecto-sp13_S_contig58893.16404.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig58893.16404.1 vs. uniprot
Match: A0A6H5K6M6_9PHAE (Diacylglycerol kinase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6M6_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 2.560e-18
Identity = 39/40 (97.50%), Postives = 40/40 (100.00%), Query Frame = 1 
Query:   55 QAAEVELRIRSEIHMQIDGEPWKQAPAKINIQHYGQSTCL 174
            QAAEVELRIRSEIHMQIDGEPWKQAPAK+NIQHYGQSTCL
Sbjct:  786 QAAEVELRIRSEIHMQIDGEPWKQAPAKVNIQHYGQSTCL 825
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BLAST of mRNA_Ecto-sp13_S_contig58893.16404.1 vs. uniprot
Match: UPI000C76EDDD (diacylglycerol kinase epsilon-like n=1 Tax=Eurytemora affinis TaxID=88015 RepID=UPI000C76EDDD)

HSP 1 Score: 48.1 bits (113), Expect = 6.920e-5
Identity = 20/40 (50.00%), Postives = 26/40 (65.00%), Query Frame = 1 
Query:   55 QAAEVELRIRSEIHMQIDGEPWKQAPAKINIQHYGQSTCL 174
            QA EV + I   + +QIDGEPW+Q PA I + HY Q + L
Sbjct:  492 QATEVRIEIEDSVPLQIDGEPWEQHPAVIQLSHYSQVSML 531
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig58893.16404.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K6M6_9PHAE2.560e-1897.50Diacylglycerol kinase n=1 Tax=Ectocarpus sp. CCAP ... [more]
UPI000C76EDDD6.920e-550.00diacylglycerol kinase epsilon-like n=1 Tax=Eurytem... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig58893contigEcto-sp13_S_contig58893:677..850 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size174
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size174
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463818.5116978-CDS-Ecto-sp13_S_contig58893:676..8501681463818.5116978-CDS-Ecto-sp13_S_contig58893:676..850Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig58893 677..850 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig58893.16404.1prot_Ecto-sp13_S_contig58893.16404.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig58893 677..850 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig58893.16404.1

>prot_Ecto-sp13_S_contig58893.16404.1 ID=prot_Ecto-sp13_S_contig58893.16404.1|Name=mRNA_Ecto-sp13_S_contig58893.16404.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=58bp
GIPNCIVRTPCCSAVMFIQAAEVELRIRSEIHMQIDGEPWKQAPAKINIQ
HYGQSTCL
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mRNA from alignment at Ecto-sp13_S_contig58893:677..850+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig58893.16404.1 ID=mRNA_Ecto-sp13_S_contig58893.16404.1|Name=mRNA_Ecto-sp13_S_contig58893.16404.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=174bp|location=Sequence derived from alignment at Ecto-sp13_S_contig58893:677..850+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGCATACCAAATTGTATCGTGCGCACTCCGTGTTGCTCCGCGGTCATGTT
TATCCAGGCAGCCGAGGTTGAGCTAAGGATTCGGTCCGAGATTCACATGC
AGATCGACGGAGAGCCGTGGAAGCAGGCCCCGGCCAAGATCAACATCCAG
CATTACGGGCAGTCCACGTGTCTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig58893:677..850+

>mRNA_Ecto-sp13_S_contig58893.16404.1 ID=mRNA_Ecto-sp13_S_contig58893.16404.1|Name=mRNA_Ecto-sp13_S_contig58893.16404.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=174bp|location=Sequence derived from alignment at Ecto-sp13_S_contig58893:677..850+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGCATACCAAATTGTATCGTGCGCACTCCGTGTTGCTCCGCGGTCATGTT
TATCCAGGCAGCCGAGGTTGAGCTAAGGATTCGGTCCGAGATTCACATGC
AGATCGACGGAGAGCCGTGGAAGCAGGCCCCGGCCAAGATCAACATCCAG
CATTACGGGCAGTCCACGTGTCTG
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