mRNA_Ecto-sp13_S_contig58890.16403.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig58890.16403.1
Unique NamemRNA_Ecto-sp13_S_contig58890.16403.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig58890.16403.1 vs. uniprot
Match: D7G5Z7_ECTSI (Putative sarcosine-dimethylglycine methyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5Z7_ECTSI)

HSP 1 Score: 60.5 bits (145), Expect = 7.010e-9
Identity = 26/26 (100.00%), Postives = 26/26 (100.00%), Query Frame = 2 
Query:    2 ARGLDAWVSAAERDLICWGYVTFAKP 79
            ARGLDAWVSAAERDLICWGYVTFAKP
Sbjct:  597 ARGLDAWVSAAERDLICWGYVTFAKP 622
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BLAST of mRNA_Ecto-sp13_S_contig58890.16403.1 vs. uniprot
Match: A0A6H5L6E6_9PHAE (Methyltransf_11 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6E6_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 6.030e-8
Identity = 25/26 (96.15%), Postives = 25/26 (96.15%), Query Frame = 2 
Query:    2 ARGLDAWVSAAERDLICWGYVTFAKP 79
            ARGLDAWVSAAER LICWGYVTFAKP
Sbjct:   86 ARGLDAWVSAAERGLICWGYVTFAKP 111
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BLAST of mRNA_Ecto-sp13_S_contig58890.16403.1 vs. uniprot
Match: A0A6H5L7A2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7A2_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 6.210e-8
Identity = 25/26 (96.15%), Postives = 25/26 (96.15%), Query Frame = 2 
Query:    2 ARGLDAWVSAAERDLICWGYVTFAKP 79
            ARGLDAWVSAAER LICWGYVTFAKP
Sbjct:  473 ARGLDAWVSAAERGLICWGYVTFAKP 498
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BLAST of mRNA_Ecto-sp13_S_contig58890.16403.1 vs. uniprot
Match: D7G7W9_ECTSI (Putative sarcosine-dimethylglycine methyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7W9_ECTSI)

HSP 1 Score: 50.4 bits (119), Expect = 2.330e-5
Identity = 18/25 (72.00%), Postives = 24/25 (96.00%), Query Frame = 2 
Query:    5 RGLDAWVSAAERDLICWGYVTFAKP 79
            RG++AW+SAA+R+LICWGY+TF KP
Sbjct:  257 RGIEAWISAAQRNLICWGYMTFTKP 281
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig58890.16403.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G5Z7_ECTSI7.010e-9100.00Putative sarcosine-dimethylglycine methyltransfera... [more]
A0A6H5L6E6_9PHAE6.030e-896.15Methyltransf_11 domain-containing protein n=1 Tax=... [more]
A0A6H5L7A2_9PHAE6.210e-896.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G7W9_ECTSI2.330e-572.00Putative sarcosine-dimethylglycine methyltransfera... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig58890contigEcto-sp13_S_contig58890:142..838 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size235
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size174
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463818.458123-UTR-Ecto-sp13_S_contig58890:141..2021681463818.458123-UTR-Ecto-sp13_S_contig58890:141..202Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig58890 142..202 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463818.4700668-CDS-Ecto-sp13_S_contig58890:202..2971681463818.4700668-CDS-Ecto-sp13_S_contig58890:202..297Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig58890 203..297 -
1681463818.4811592-CDS-Ecto-sp13_S_contig58890:759..8381681463818.4811592-CDS-Ecto-sp13_S_contig58890:759..838Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig58890 760..838 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig58890.16403.1prot_Ecto-sp13_S_contig58890.16403.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig58890 203..838 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig58890.16403.1

>prot_Ecto-sp13_S_contig58890.16403.1 ID=prot_Ecto-sp13_S_contig58890.16403.1|Name=mRNA_Ecto-sp13_S_contig58890.16403.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=58bp
GQGTRRLGFGGRARPYLLGVRDLRQAGGVTQEEGHAEACLILPIFEITQR
WNENKRD*
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mRNA from alignment at Ecto-sp13_S_contig58890:142..838-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig58890.16403.1 ID=mRNA_Ecto-sp13_S_contig58890.16403.1|Name=mRNA_Ecto-sp13_S_contig58890.16403.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=697bp|location=Sequence derived from alignment at Ecto-sp13_S_contig58890:142..838- (Ectocarpus species13 EcNAP12_S_4_19m)
GGCCAGGGGACTCGACGCTTGGGTTTCGGCGGCCGAGCGCGACCTTATCT
GCTGGGGGTACGTGACCTTCGCCAAGCCGGTGAGTTGTGTGTTGTTGTTG
TTGATGTTGTTGTTGTTGATGTTGTTTTTGTTGTTGGTGCAGACTTGCGT
GGTGGGTGTTTTTGTTGCTGTGAACAGTCTTCTTATCTTACGATCCCGCT
AGGCAAGTAACAAGCGCCTCCGCCTCTCTCACCTTGAGGGAGAGAGAGAA
AAGCTGGAGGCCAGCGCTTCAAAAAGTGAGGCAAGAAACACGCACACAAC
AGACAACAGTCCCCCAGATGGTACATCAAACGATGCACTTCGAACTAGAA
AGCCCGAAGTCAATATTTCAACCAGTCAGTAGAAGTAAAAGAGAACCAAG
TAGAATACCCTTGACAGACTTGATCTCGGGGTGTGATGCTTGATGCAGGC
ACATTGTGTGTGGCCACCTGAGTTTGTATTCGTCTCATCTGTTGCTGCGC
GTGTTTTCGGGGCTTTTCGGCGTATGTACCTGACTTGTCAGGTGGGGTCA
CACAAGAGGAAGGTCACGCAGAAGCTTGTCTGATCCTTCCAATATTTGAG
ATAACACAACGCTGGAACGAGAACAAAAGAGATTAGCAAAGAGCCAAGAG
GCGAAGAATAGCGAAGGATAAGACAGAATATGTGACCTGGGACTGCA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig58890:142..838-

>mRNA_Ecto-sp13_S_contig58890.16403.1 ID=mRNA_Ecto-sp13_S_contig58890.16403.1|Name=mRNA_Ecto-sp13_S_contig58890.16403.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=174bp|location=Sequence derived from alignment at Ecto-sp13_S_contig58890:142..838- (Ectocarpus species13 EcNAP12_S_4_19m)
GGCCAGGGGACTCGACGCTTGGGTTTCGGCGGCCGAGCGCGACCTTATCT
GCTGGGGGTACGTGACCTTCGCCAAGCCGGTGGGGTCACACAAGAGGAAG
GTCACGCAGAAGCTTGTCTGATCCTTCCAATATTTGAGATAACACAACGC
TGGAACGAGAACAAAAGAGATTAG
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