mRNA_Ecto-sp13_S_contig5886.16397.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig5886.16397.1 vs. uniprot
Match: D8LER1_ECTSI (3-phosphoshikimate 1-carboxyvinyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LER1_ECTSI) HSP 1 Score: 238 bits (607), Expect = 1.990e-72 Identity = 123/131 (93.89%), Postives = 124/131 (94.66%), Query Frame = 1
Query: 1 ELFLGNAGTAMRPLTAVVCAGKGEFVMDGTPRMRERPIVDLVDGLKQVGFFVGCLGVDVSCSDTGCPPVNIKAAGLNGGTTRVSGKISSQYLSALLMAAPLSSGDVVIEITDELVSAPYVHMTIKLMDKFG 393
ELFLGNAGTAMRPLTAVVCAGKGEFVMDGTPRMRERPIVDLVDGLKQ LGVDVSCSDTGCPPVNIKAAGLNGGTTRVSGKISSQYLSALLMAAPLSSG+VVIEITDELVSAPYVHMTIKLMDKFG
Sbjct: 172 ELFLGNAGTAMRPLTAVVCAGKGEFVMDGTPRMRERPIVDLVDGLKQ-------LGVDVSCSDTGCPPVNIKAAGLNGGTTRVSGKISSQYLSALLMAAPLSSGEVVIEITDELVSAPYVHMTIKLMDKFG 295
BLAST of mRNA_Ecto-sp13_S_contig5886.16397.1 vs. uniprot
Match: A0A6V1NGJ7_HETAK (3-phosphoshikimate 1-carboxyvinyltransferase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NGJ7_HETAK) HSP 1 Score: 206 bits (523), Expect = 1.040e-60 Identity = 105/133 (78.95%), Postives = 114/133 (85.71%), Query Frame = 1
Query: 1 ELFLGNAGTAMRPLTAVVCAGKGEFVMDGTPRMRERPIVDLVDGLKQVGFFVGCLGVDVSCSDTGCPPVNIKAAGLNGGTTRVSGKISSQYLSALLMAAPLSSGDVVIEITDELVSAPYVHMTIKLMDKFG*E 399
ELFLGNAGTAMRPLTAV+CAG+G+FV+DG PRMRERPI DL DGL Q LGVD+S SDTGCPPVNIKA G+ GGTTRVSGKISSQY+SALLM APL+ GDVVIEI DELVSAPYVHMTIKLM K+G E
Sbjct: 96 ELFLGNAGTAMRPLTAVMCAGRGDFVLDGVPRMRERPIKDLSDGLLQ-------LGVDISVSDTGCPPVNIKARGVRGGTTRVSGKISSQYISALLMMAPLAQGDVVIEIADELVSAPYVHMTIKLMKKYGVE 221
BLAST of mRNA_Ecto-sp13_S_contig5886.16397.1 vs. uniprot
Match: A0A836CIT3_9STRA (3-phosphoshikimate 1-carboxyvinyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIT3_9STRA) HSP 1 Score: 204 bits (519), Expect = 4.740e-60 Identity = 106/131 (80.92%), Postives = 112/131 (85.50%), Query Frame = 1
Query: 1 ELFLGNAGTAMRPLTAVVCAGKGEFVMDGTPRMRERPIVDLVDGLKQVGFFVGCLGVDVSCSDTGCPPVNIKAAGLNGGTTRVSGKISSQYLSALLMAAPLSSGDVVIEITDELVSAPYVHMTIKLMDKFG 393
ELFLGNAGTAMRPLTAV+CAG+G FVMDGTPRMRERPI DLV GL Q LGVDV+CSDTGCPPV I AAG+ GGT RVSGKISSQYLSALLMAAPL+ GDV IEITDELVSAPYV MT+KLM KFG
Sbjct: 97 ELFLGNAGTAMRPLTAVMCAGEGNFVMDGTPRMRERPIKDLVGGLVQ-------LGVDVTCSDTGCPPVRIAAAGIPGGTARVSGKISSQYLSALLMAAPLARGDVTIEITDELVSAPYVSMTVKLMAKFG 220
BLAST of mRNA_Ecto-sp13_S_contig5886.16397.1 vs. uniprot
Match: W7TSU8_9STRA (3-phosphoshikimate 1-carboxyvinyltransferase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TSU8_9STRA) HSP 1 Score: 199 bits (506), Expect = 1.800e-58 Identity = 100/133 (75.19%), Postives = 113/133 (84.96%), Query Frame = 1
Query: 1 ELFLGNAGTAMRPLTAVVCAGKGEFVMDGTPRMRERPIVDLVDGLKQVGFFVGCLGVDVSCSDTGCPPVNIKAAGLNGGTTRVSGKISSQYLSALLMAAPLSSGDVVIEITDELVSAPYVHMTIKLMDKFG*E 399
EL+LGNAGTAMRPLTA +CAG G+F +DGTPRMRERPI DLVDGL+Q LGVD++CS TGCPPV I+A GL+GG R+SGKISSQYLSALLMAAPL+ GDV IEITDELVSAPYVHMT+KLM +FG E
Sbjct: 165 ELYLGNAGTAMRPLTAALCAGHGDFTLDGTPRMRERPISDLVDGLQQ-------LGVDLACSPTGCPPVTIRARGLSGGIVRISGKISSQYLSALLMAAPLARGDVRIEITDELVSAPYVHMTVKLMARFGVE 290
BLAST of mRNA_Ecto-sp13_S_contig5886.16397.1 vs. uniprot
Match: A0A7S2XVK4_9STRA (3-phosphoshikimate 1-carboxyvinyltransferase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XVK4_9STRA) HSP 1 Score: 195 bits (496), Expect = 3.210e-56 Identity = 101/131 (77.10%), Postives = 108/131 (82.44%), Query Frame = 1
Query: 1 ELFLGNAGTAMRPLTAVVCAGKGEFVMDGTPRMRERPIVDLVDGLKQVGFFVGCLGVDVSCSDTGCPPVNIKAAGLNGGTTRVSGKISSQYLSALLMAAPLSSGDVVIEITDELVSAPYVHMTIKLMDKFG 393
ELFLGNAGTAMRPL AVVCAG+G FV+DG RMRERPI DL DGLKQ LGVDVSCS TGCPPV + A G+ GG TRVSGKISSQ+LSALLM APL+ DVVIEITDELVSAPYVHMTIKLM K+G
Sbjct: 147 ELFLGNAGTAMRPLAAVVCAGQGNFVLDGVARMRERPIKDLTDGLKQ-------LGVDVSCSGTGCPPVFVHAKGIEGGLTRVSGKISSQFLSALLMMAPLAKSDVVIEITDELVSAPYVHMTIKLMAKYG 270
BLAST of mRNA_Ecto-sp13_S_contig5886.16397.1 vs. uniprot
Match: A0A7S1UKH8_9STRA (3-phosphoshikimate 1-carboxyvinyltransferase n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UKH8_9STRA) HSP 1 Score: 186 bits (471), Expect = 1.120e-52 Identity = 95/131 (72.52%), Postives = 106/131 (80.92%), Query Frame = 1
Query: 1 ELFLGNAGTAMRPLTAVVCAGKGEFVMDGTPRMRERPIVDLVDGLKQVGFFVGCLGVDVSCSDTGCPPVNIKAAGLNGGTTRVSGKISSQYLSALLMAAPLSSGDVVIEITDELVSAPYVHMTIKLMDKFG 393
EL+LGNAGTAMRPL AVV A +G +V+DGTPRMRERPI DLV LK L V++ CSDTGCPPV I A GL GGT VSGKISSQYLSALLMAAPL+SGD+ I+I DELVSAPYVHMTIKL++KFG
Sbjct: 130 ELYLGNAGTAMRPLCAVVAASEGRYVLDGTPRMRERPIQDLVTALKD-------LDVELECSDTGCPPVTINAKGLAGGTAEVSGKISSQYLSALLMAAPLASGDITIKIKDELVSAPYVHMTIKLLEKFG 253
BLAST of mRNA_Ecto-sp13_S_contig5886.16397.1 vs. uniprot
Match: A0A7S2RGT1_9STRA (3-phosphoshikimate 1-carboxyvinyltransferase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RGT1_9STRA) HSP 1 Score: 182 bits (463), Expect = 2.730e-51 Identity = 93/131 (70.99%), Postives = 104/131 (79.39%), Query Frame = 1
Query: 1 ELFLGNAGTAMRPLTAVVCAGKGEFVMDGTPRMRERPIVDLVDGLKQVGFFVGCLGVDVSCSDTGCPPVNIKAAGLNGGTTRVSGKISSQYLSALLMAAPLSSGDVVIEITDELVSAPYVHMTIKLMDKFG 393
ELFLGNAGTAMRPL A +C G+G FV+DG RMRERPI DLVDGL Q LG DV+CSDTGCPPV+I A L GG R+SGKISSQ+LSALLMAAPL+SGDV +EITDELVSAPYV +T LM K+G
Sbjct: 155 ELFLGNAGTAMRPLAAALCFGQGAFVLDGVERMRERPIADLVDGLNQ-------LGADVTCSDTGCPPVHINAEPLKGGVARISGKISSQFLSALLMAAPLASGDVTVEITDELVSAPYVMLTAGLMAKYG 278
BLAST of mRNA_Ecto-sp13_S_contig5886.16397.1 vs. uniprot
Match: R7QRX5_CHOCR (3-phosphoshikimate 1-carboxyvinyltransferase n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QRX5_CHOCR) HSP 1 Score: 182 bits (461), Expect = 4.000e-51 Identity = 97/135 (71.85%), Postives = 107/135 (79.26%), Query Frame = 1
Query: 1 ELFLGNAGTAMRPLTAVVCA--GKGEFVMDGTPRMRERPIVDLVDGLKQVGFFVGCLGVDVSCSDTGCPPVNIK--AAGLNGGTTRVSGKISSQYLSALLMAAPLSSGDVVIEITDELVSAPYVHMTIKLMDKFG 393
ELFLGNAGTAMRPLTA +C GKGEFV+DGTPRMRERPI DL+D L+Q LG DV CSDTGCPPV I+ AGL GG RVSGKISSQYLSALL+AAP+++ DV I ITDELVS PYV MTI LM+KFG
Sbjct: 134 ELFLGNAGTAMRPLTAALCVAKGKGEFVLDGTPRMRERPINDLIDALQQ-------LGADVECSDTGCPPVRIRNTEAGLPGGVARVSGKISSQYLSALLIAAPMANEDVTIRITDELVSVPYVKMTINLMNKFG 261
BLAST of mRNA_Ecto-sp13_S_contig5886.16397.1 vs. uniprot
Match: M2Y907_GALSU (3-phosphoshikimate 1-carboxyvinyltransferase n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2Y907_GALSU) HSP 1 Score: 181 bits (460), Expect = 7.100e-51 Identity = 93/131 (70.99%), Postives = 104/131 (79.39%), Query Frame = 1
Query: 1 ELFLGNAGTAMRPLTAVVCAGKGEFVMDGTPRMRERPIVDLVDGLKQVGFFVGCLGVDVSCSDTGCPPVNIKAAGLNGGTTRVSGKISSQYLSALLMAAPLSSGDVVIEITDELVSAPYVHMTIKLMDKFG 393
ELFLGNAGTAMRPLTA +C G GEFV+DG RMRERPI DLV GL+Q LG V+CSDTGCPPV+IKA GL GG T VSGK+SSQ+LS+LLMAAP S DVVIEI DEL+S PYV MTI+LM +FG
Sbjct: 151 ELFLGNAGTAMRPLTAALCLGDGEFVLDGVKRMRERPIADLVQGLQQ-------LGAQVTCSDTGCPPVHIKAKGLRGGKTIVSGKMSSQFLSSLLMAAPYSKNDVVIEIQDELISVPYVSMTIELMRRFG 274
BLAST of mRNA_Ecto-sp13_S_contig5886.16397.1 vs. uniprot
Match: A0A7S2VGI4_9STRA (3-phosphoshikimate 1-carboxyvinyltransferase (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2VGI4_9STRA) HSP 1 Score: 180 bits (456), Expect = 4.060e-50 Identity = 94/150 (62.67%), Postives = 109/150 (72.67%), Query Frame = 1
Query: 1 ELFLGNAGTAMRPLTAVVCAGKGEFVMDGTPRMRERPIVDLVDGLKQVGFFVGCLGVDVSC-SDTGCPPVNIKAAGLNGGTTRVSGKISSQYLSALLMAAPLSSGDVVIEITDELVSAPYVHMTIKLMDKFG*EFCRCCDVHTCQVFVFG 447
ELFLGNAGTAMRPL A +C GKG+FV+DG PRMRERPI DL+DGLKQ LG DVSC +TGCPPV I A GLNGGT +SGK+SSQ+LS+LLMA+P+ GDV I I DEL+SAPYV +TI LM KFG D+ F+ G
Sbjct: 176 ELFLGNAGTAMRPLAAALCMGKGKFVLDGVPRMRERPIADLIDGLKQ-------LGADVSCVEETGCPPVTINANGLNGGTASISGKMSSQFLSSLLMASPVVDGDVTIAIKDELISAPYVSLTIGLMKKFGVNVKIEGDMDGTPSFIIG 318 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5886.16397.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig5886.16397.1 >prot_Ecto-sp13_S_contig5886.16397.1 ID=prot_Ecto-sp13_S_contig5886.16397.1|Name=mRNA_Ecto-sp13_S_contig5886.16397.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=122bp MRPLTAVVCAGKGEFVMDGTPRMRERPIVDLVDGLKQVGFFVGCLGVDVSback to top mRNA from alignment at Ecto-sp13_S_contig5886:1228..2257+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig5886.16397.1 ID=mRNA_Ecto-sp13_S_contig5886.16397.1|Name=mRNA_Ecto-sp13_S_contig5886.16397.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1030bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5886:1228..2257+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5886:1228..2257+ >mRNA_Ecto-sp13_S_contig5886.16397.1 ID=mRNA_Ecto-sp13_S_contig5886.16397.1|Name=mRNA_Ecto-sp13_S_contig5886.16397.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=366bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5886:1228..2257+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |