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|
Homology
BLAST of mRNA_Ecto-sp13_S_contig5882.16393.1 vs. uniprot
Match: D8LU49_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU49_ECTSI) HSP 1 Score: 219 bits (558), Expect = 3.130e-65 Identity = 114/125 (91.20%), Postives = 119/125 (95.20%), Query Frame = 1
Query: 238 MKLKVGHRHVDQSGLVYLPYLHEWAARTHNLVELIANMSGVFGAEPPLFAGSSREKPPIPDTSRPRTPP-VIVSPEEVRKRTEKDLTAKLQSELQAMYAVLRTDMDSAFETQGQLEESKEEVERD 609
MKLKVGHRHVDQSGLVYLPYLHEWAARTHNLVELIANMSGVFGAEPPLFAGSS++ PPIPD + P PP VIVSPE+VRK+TEKDLTAKLQSELQAMYAVLRTDMDSAFETQGQLEESKEEVERD
Sbjct: 1 MKLKVGHRHVDQSGLVYLPYLHEWAARTHNLVELIANMSGVFGAEPPLFAGSSQQNPPIPDPTPPMIPPPVIVSPEQVRKKTEKDLTAKLQSELQAMYAVLRTDMDSAFETQGQLEESKEEVERD 125
BLAST of mRNA_Ecto-sp13_S_contig5882.16393.1 vs. uniprot
Match: D8LU50_ECTSI (UEV domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU50_ECTSI) HSP 1 Score: 168 bits (426), Expect = 6.390e-48 Identity = 78/79 (98.73%), Postives = 79/79 (100.00%), Query Frame = 1
Query: 1 QDPNRIRTDVLNVWRHHQSLVPKRGRLTLNTGQECELLMLEGTFPIVYRAVTYFTPVEIYISENYPTSPPMCYIRPTAG 237
QDPNRIRTDVLNVWRHHQSLVPKRGRLTLNTGQECELLMLEGTFPIVYRAVTYFTPVEIYISENYPTSPP+CYIRPTAG
Sbjct: 73 QDPNRIRTDVLNVWRHHQSLVPKRGRLTLNTGQECELLMLEGTFPIVYRAVTYFTPVEIYISENYPTSPPVCYIRPTAG 151
BLAST of mRNA_Ecto-sp13_S_contig5882.16393.1 vs. uniprot
Match: A0A7S4D482_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D482_HETAK) HSP 1 Score: 167 bits (423), Expect = 5.900e-45 Identity = 91/215 (42.33%), Postives = 127/215 (59.07%), Query Frame = 1
Query: 13 RIRTDVLNVWRHHQSLVPKRGRLTLNTGQECELLMLEGTFPIVYRAVTYFTPVEIYISENYPTSPPMCYIRPTAGMKLKVGHRHVDQSGLVYLPYLHEWAARTHNLVELIANMSGVFGAEPPLFAGSSREKPPIP-------------DTSRPRTPPVIVSPEEVRKRTEKD-----LTAKLQSELQAMYAVLRTDMDSAFETQGQLEESKEEVE 603
R++ DV+ + R ++++PK+G L N G E LL+L GT PI +R TY PVEI+I+E +P SPPMCY+RPT M LK+ HRHVD GLVYLPYLH W ARTHNL +L+ ++S VFG +PPL++ S+ P +++ PP S K LT KLQS+L Y+ LR D+D+ E Q +L + + ++E
Sbjct: 22 RVKQDVMALSRSVRTMIPKKGSLIRNDGTESTLLVLGGTVPISFRGSTYNIPVEIFITEPFPNSPPMCYVRPTNNMMLKIPHRHVDSEGLVYLPYLHTWNARTHNLTDLVGHVSAVFGQDPPLYSKPSQPNPXXXXXXXXXXXXQRSSESNTMSQPPSYQSVSRGHAADPKQEALELLTRKLQSKLHGFYSGLRDDIDAELERQAKLADQQADME 236
BLAST of mRNA_Ecto-sp13_S_contig5882.16393.1 vs. uniprot
Match: D8LU57_ECTSI (UEV domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LU57_ECTSI) HSP 1 Score: 159 bits (402), Expect = 4.650e-41 Identity = 77/132 (58.33%), Postives = 101/132 (76.52%), Query Frame = 1
Query: 1 QDPNRIRTDVLNVWRHHQSLVPKRGRLTLNTGQECELLMLEGTFPIVYRAVTYFTPVEIYISENYPTSPPMCYIRPTAGMKLKVGHRHVDQSGLVYLPYLHEWAARTHNLVELIANMSGVFGAEPPLFAGSS 396
Q+P+R++ DVL + + ++LVPKRG + L +G+ ELL L GTFP+V+R YFTPV+IYI+E+YP SPP+CYI PT GM L+ GH+ VD++GLV LPYL W+A HNLVEL+ MS VFGA+PPLFA S
Sbjct: 33 QEPDRVQRDVLELSKSCKTLVPKRGSVDLESGRT-ELLTLHGTFPMVFRNAQYFTPVQIYITESYPASPPVCYIIPTPGMSLRAGHQSVDETGLVSLPYLQGWSA-AHNLVELVGTMSTVFGAQPPLFATPS 162
BLAST of mRNA_Ecto-sp13_S_contig5882.16393.1 vs. uniprot
Match: A0A835ZFB1_9STRA (UEV domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFB1_9STRA) HSP 1 Score: 157 bits (398), Expect = 1.510e-40 Identity = 74/132 (56.06%), Postives = 96/132 (72.73%), Query Frame = 1
Query: 1 QDPNRIRTDVLNVWRHHQSLVPKRGRLTLNTGQECELLMLEGTFPIVYRAVTYFTPVEIYISENYPTSPPMCYIRPTAGMKLKVGHRHVDQSGLVYLPYLHEWAARTHNLVELIANMSGVFGAEPPLFAGSS 396
+D RIR D+ NV + ++L P G L LNTG+E L L GT I +R +Y PVEI+I+++YP SPPM Y+RPT M ++ GHRHVD +G+VYLPYLHEW AR+H+LVEL A MSGVFG +PP++A SS
Sbjct: 17 RDVARIRWDISNVLTNVKTLSPAAGSLVLNTGEELHLATLAGTISISFRGASYNIPVEIFITKHYPESPPMAYVRPTKDMDIQKGHRHVDSAGMVYLPYLHEWEARSHDLVELCAAMSGVFGQDPPVYARSS 148
BLAST of mRNA_Ecto-sp13_S_contig5882.16393.1 vs. uniprot
Match: W7TRL2_9STRA (UEV domain-containing protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TRL2_9STRA) HSP 1 Score: 150 bits (379), Expect = 1.870e-39 Identity = 69/125 (55.20%), Postives = 89/125 (71.20%), Query Frame = 1
Query: 13 RIRTDVLNVWRHHQSLVPKRGRLTLNTGQECELLMLEGTFPIVYRAVTYFTPVEIYISENYPTSPPMCYIRPTAGMKLKVGHRHVDQSGLVYLPYLHEWAARTHNLVELIANMSGVFGAEPPLFA 387
R+R DV+ ++L+PK + N G E ELL+L GT I Y++ Y PVE+YISE YP +PP CY+RPT M +KVGHRHVD+ GL+YLPYLHEW AR+HN+ EL A MS VFG +PP++A
Sbjct: 51 RVRADVIACIAQVRTLIPKVEKFIHNNGTESELLVLSGTVAINYQSRQYNIPVEVYISEPYPEAPPRCYVRPTKEMDIKVGHRHVDRDGLIYLPYLHEWNARSHNVTELCAAMSSVFGLDPPVYA 175
BLAST of mRNA_Ecto-sp13_S_contig5882.16393.1 vs. uniprot
Match: A0A4D9CWE8_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CWE8_9STRA) HSP 1 Score: 150 bits (379), Expect = 5.540e-38 Identity = 69/125 (55.20%), Postives = 89/125 (71.20%), Query Frame = 1
Query: 13 RIRTDVLNVWRHHQSLVPKRGRLTLNTGQECELLMLEGTFPIVYRAVTYFTPVEIYISENYPTSPPMCYIRPTAGMKLKVGHRHVDQSGLVYLPYLHEWAARTHNLVELIANMSGVFGAEPPLFA 387
R+R DV+ ++L+PK + N G E ELL+L GT I Y++ Y PVE+YISE YP +PP CY+RPT M +KVGHRHVD+ GL+YLPYLHEW AR+HN+ EL A MS VFG +PP++A
Sbjct: 22 RVRADVIACIAQVRTLIPKVEKFIHNNGTESELLVLSGTVAINYQSRQYNIPVEVYISEPYPEAPPRCYVRPTKEMDIKVGHRHVDRDGLIYLPYLHEWNARSHNVTELCAAMSSVFGLDPPVYA 146
BLAST of mRNA_Ecto-sp13_S_contig5882.16393.1 vs. uniprot
Match: A0A6G0WKG4_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WKG4_9STRA) HSP 1 Score: 128 bits (322), Expect = 2.720e-30 Identity = 78/240 (32.50%), Postives = 111/240 (46.25%), Query Frame = 1
Query: 4 DPNRIRTDVLNVWRHHQSLVPKRGRLTLNTGQECELLMLEGTFPIVYRAVTYFTPVEIYISENYPTSPPMCYIRPTAGMKLKVGHRHVDQSGLVYLPYLHEWAARTHNLVELIANMSGVFGAEPPLFAGSSREKPPIP-----------------------------------------DTSRPRTPPVIVSPEEVRKRTEKDLTAKLQSELQAMYAVLRTDMDSAFETQGQLEESKEEV 600
DP R+R DV + R SL P+ G T N G +L L GT PI Y Y PVEI++ E YP + P C++RPTA M ++ GH HVDQ+GL+ LPY W + H+LVELI +FGA PP+F + + P P + S PP + + + T K+Q ELQ +Y +R ++D FETQ ++ ++ +
Sbjct: 9 DPTRVRQDVETLLRQIPSLGPQNGVFTHNNGTTSTMLSLSGTIPIYYGGNQYNIPVEIWMPEAYPFAAPTCFVRPTADMMIRPGHPHVDQNGLIVLPYSTNWDS-DHSLVELIGYQCSIFGATPPVFRRPANQPAPAPVQYLPSPAQQYSQQPQYQGGYTSSQQAYGQTTPSYHQAAYTEPSNTYKPPYTXXXXXXXXKLKAEATEKIQHELQKIYRRIRDEIDGQFETQREISHGQQRI 247
BLAST of mRNA_Ecto-sp13_S_contig5882.16393.1 vs. uniprot
Match: A0A1V9ZMC8_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZMC8_9STRA) HSP 1 Score: 128 bits (322), Expect = 3.190e-30 Identity = 87/252 (34.52%), Postives = 124/252 (49.21%), Query Frame = 1
Query: 4 DPNRIRTDVLNVWRHHQSLVPKRGRLTLNTGQECELLMLEGTFPIVYRAVTYFTPVEIYISENYPTSPPMCYIRPTAGMKLKVGHRHVDQSGLVYLPYLHEWAARTHNLVELIANMSGVFGAEPPLFAGSSREKPPI--------------PDTSRPR-----------TPPVIV----------SPEEVRKRTEKDLTAKLQSELQAMYAVLRTDMDSAFETQGQLEESKEEVERDXXXXXXRKKELERLL 654
D R+R DV + R SL P+ G T N G +L L GT PI Y Y PVEI++ E YP + P CY+RPTA M ++ GH HVDQ+GL+ LPY W + H+LVELI VFG +PP++ + + P P TS + PP +P+ K + D T KLQ E+Q +Y +R ++D+ FETQ ++ + ++E+ + K ELE+ L
Sbjct: 21 DATRVRQDVETLLRQIPSLSPQSGVYTHNNGTTSTMLSLSGTIPIYYNGNQYNIPVEIWMPEAYPFAAPTCYVRPTADMMIRPGHPHVDQNGLILLPYSTHWDS-DHSLVELIGYQCSVFGTQPPVYKRPAHQPAPTYTXXXXNPYESHMQPSTSAAQYGYQQPPQSQYNPPSYTXXXXXAYAQPTPDPSIK-LKADATEKLQHEMQKLYKRIREEIDAQFETQREVSQGRDELIQGEQSLLQLKHELEQTL 270
BLAST of mRNA_Ecto-sp13_S_contig5882.16393.1 vs. uniprot
Match: A0A485L049_9STRA (Aste57867_13975 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L049_9STRA) HSP 1 Score: 127 bits (319), Expect = 9.760e-30 Identity = 84/249 (33.73%), Postives = 118/249 (47.39%), Query Frame = 1
Query: 4 DPNRIRTDVLNVWRHHQSLVPKRGRLTLNTGQECELLMLEGTFPIVYRAVTYFTPVEIYISENYPTSPPMCYIRPTAGMKLKVGHRHVDQSGLVYLPYLHEWAARTHNLVELIANMSGVFGAEPPLFAGSSREKP-PIP----------------------------------------------DTSR---PRTPPVIVSPEEVRKRTEKDLTAKLQSELQAMYAVLRTDMDSAFETQGQLEESKEEV 600
D R+R DV + R SL P+ G T N G +L L GT PI Y Y PVEI++ E YP + P C++RPTA M ++ GH HVDQ+GL++LPY W + H+LVELI VFGA PP+F + ++P P P D S+ P TPPV+ + + + D T K+Q ELQ +Y +R ++D FETQ + ++ +
Sbjct: 21 DATRVRQDVETLLRQIPSLGPQSGIFTHNNGSTSTMLSLSGTIPIYYGGNQYNIPVEIWLPEAYPFAAPTCFVRPTADMMIRPGHPHVDQNGLIHLPYSTNWDS-DHSLVELIGYQCSVFGATPPVFRRPANQQPVPAPTYAXXXXXXXXXXQQTYQGGGXXXXXXXXXXXXXXASQYPGSSAYADPSQNYQPYTPPVV----DPSVKLKADATEKIQHELQKLYKRIRDEIDLQFETQRDISHGQQRI 264
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Eukaryota |
| Stop | 1 |
| Start | 1 |
| Seed ortholog score | 222.6 |
| Seed ortholog evalue | 1.5e-55 |
| Seed eggNOG ortholog | 2880.D8LU49 |
| Preferred name | TSG101 |
| Model size | 1103 |
| KEGG ko | ko:K08576,ko:K11974,ko:K12183 |
| KEGG Pathway | ko04144,ko04217,ko04621,map04144,map04217,map04621 |
| KEGG Module | M00409 |
| Hectar predicted targeting category | other localisation |
| GOs | GO:0000813,GO:0001558,GO:0001932,GO:0001933,GO:0003674,GO:0003676,GO:0003677,GO:0003712,GO:0003713,GO:0003714,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005768,GO:0005769,GO:0005770,GO:0005771,GO:0005829,GO:0005886,GO:0006355,GO:0006464,GO:0006469,GO:0006508,GO:0006511,GO:0006513,GO:0006807,GO:0006810,GO:0006858,GO:0006887,GO:0006914,GO:0006996,GO:0007032,GO:0007034,GO:0007041,GO:0007049,GO:0007050,GO:0007163,GO:0007175,GO:0007176,GO:0007275,GO:0007399,GO:0008150,GO:0008152,GO:0008285,GO:0008333,GO:0008544,GO:0009056,GO:0009057,GO:0009888,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009913,GO:0009966,GO:0009968,GO:0009987,GO:0010008,GO:0010256,GO:0010468,GO:0010469,GO:0010556,GO:0010557,GO:0010558,GO:0010563,GO:0010604,GO:0010605,GO:0010629,GO:0010646,GO:0010648,GO:0012505,GO:0016020,GO:0016032,GO:0016043,GO:0016050,GO:0016192,GO:0016197,GO:0016236,GO:0016322,GO:0016567,GO:0017157,GO:0019058,GO:0019068,GO:0019219,GO:0019220,GO:0019222,GO:0019538,GO:0019899,GO:0019941,GO:0021700,GO:0022008,GO:0022402,GO:0022411,GO:0022607,GO:0023051,GO:0023057,GO:0030011,GO:0030100,GO:0030154,GO:0030163,GO:0030182,GO:0030216,GO:0030374,GO:0030587,GO:0030855,GO:0031090,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031399,GO:0031400,GO:0031410,GO:0031625,GO:0031974,GO:0031981,GO:0031982,GO:0032182,GO:0032268,GO:0032269,GO:0032446,GO:0032501,GO:0032502,GO:0032509,GO:0032510,GO:0032801,GO:0032879,GO:0032880,GO:0032940,GO:0032984,GO:0032991,GO:0033043,GO:0033673,GO:0035088,GO:0035090,GO:0036211,GO:0036257,GO:0036258,GO:0036452,GO:0039702,GO:0040008,GO:0040012,GO:0040017,GO:0042058,GO:0042059,GO:0042127,GO:0042325,GO:0042326,GO:0042551,GO:0042802,GO:0042803,GO:0043086,GO:0043112,GO:0043130,GO:0043162,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043230,GO:0043231,GO:0043232,GO:0043233,GO:0043405,GO:0043408,GO:0043412,GO:0043549,GO:0043588,GO:0043632,GO:0043900,GO:0043901,GO:0043902,GO:0043903,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044092,GO:0044126,GO:0044130,GO:0044144,GO:0044146,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044403,GO:0044419,GO:0044421,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0045570,GO:0045571,GO:0045786,GO:0045807,GO:0045859,GO:0045892,GO:0045921,GO:0045926,GO:0045934,GO:0045935,GO:0045936,GO:0046620,GO:0046621,GO:0046755,GO:0046790,GO:0046903,GO:0046907,GO:0046983,GO:0048306,GO:0048468,GO:0048469,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048524,GO:0048583,GO:0048585,GO:0048638,GO:0048640,GO:0048666,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050730,GO:0050732,GO:0050789,GO:0050790,GO:0050792,GO:0050793,GO:0050794,GO:0051046,GO:0051047,GO:0051049,GO:0051050,GO:0051093,GO:0051128,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051179,GO:0051222,GO:0051223,GO:0051234,GO:0051239,GO:0051241,GO:0051246,GO:0051248,GO:0051252,GO:0051253,GO:0051254,GO:0051338,GO:0051348,GO:0051603,GO:0051641,GO:0051649,GO:0051703,GO:0051704,GO:0051726,GO:0060255,GO:0060341,GO:0060429,GO:0060627,GO:0061097,GO:0061099,GO:0061245,GO:0061919,GO:0065007,GO:0065009,GO:0070013,GO:0070062,GO:0070201,GO:0070647,GO:0070925,GO:0071695,GO:0071704,GO:0071840,GO:0071900,GO:0071944,GO:0071985,GO:0080090,GO:0090087,GO:0090702,GO:0097159,GO:0097352,GO:0097708,GO:0097734,GO:0098588,GO:0098796,GO:0098805,GO:0099120,GO:0140110,GO:0140112,GO:1901184,GO:1901185,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1902115,GO:1902186,GO:1902188,GO:1902531,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:1903530,GO:1903532,GO:1903541,GO:1903543,GO:1903551,GO:1903561,GO:1903772,GO:1903774,GO:1903827,GO:1903829,GO:1903900,GO:1903902,GO:1904951,GO:1990182,GO:2000026,GO:2000112,GO:2000113,GO:2000272,GO:2000395,GO:2000397,GO:2001141 |
| Exons | 10 |
| EggNOG free text desc. | Tumor susceptibility |
| EggNOG OGs | KOG2391@1,KOG2391@2759 |
| Ec32 ortholog description | Ubiquitin-conjugating enzyme/RWD-like |
| Ec32 ortholog | Ec-16_000220.1 |
| EC | 2.3.2.31 |
| Cds size | 576 |
| COG Functional cat. | O |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko00001,ko00002,ko01000,ko01002,ko04121,ko04131,ko04147 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1681463817.4207969-UTR-Ecto-sp13_S_contig5882:1..175 | 1681463817.4207969-UTR-Ecto-sp13_S_contig5882:1..175 | Ectocarpus species13 EcNAP12_S_4_19m | UTR | Ecto-sp13_S_contig5882 2..175 - |
| 1681463817.4419143-UTR-Ecto-sp13_S_contig5882:767..924 | 1681463817.4419143-UTR-Ecto-sp13_S_contig5882:767..924 | Ectocarpus species13 EcNAP12_S_4_19m | UTR | Ecto-sp13_S_contig5882 768..924 - |
| 1681463817.454451-UTR-Ecto-sp13_S_contig5882:2272..2354 | 1681463817.454451-UTR-Ecto-sp13_S_contig5882:2272..2354 | Ectocarpus species13 EcNAP12_S_4_19m | UTR | Ecto-sp13_S_contig5882 2273..2354 - |
| 1681463817.5442975-UTR-Ecto-sp13_S_contig5882:6564..6596 | 1681463817.5442975-UTR-Ecto-sp13_S_contig5882:6564..6596 | Ectocarpus species13 EcNAP12_S_4_19m | UTR | Ecto-sp13_S_contig5882 6565..6596 - |
| 1681463817.5564642-UTR-Ecto-sp13_S_contig5882:8030..8112 | 1681463817.5564642-UTR-Ecto-sp13_S_contig5882:8030..8112 | Ectocarpus species13 EcNAP12_S_4_19m | UTR | Ecto-sp13_S_contig5882 8031..8112 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1681463817.4640827-CDS-Ecto-sp13_S_contig5882:2354..2370 | 1681463817.4640827-CDS-Ecto-sp13_S_contig5882:2354..2370 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig5882 2355..2370 - |
| 1681463817.4738336-CDS-Ecto-sp13_S_contig5882:3067..3144 | 1681463817.4738336-CDS-Ecto-sp13_S_contig5882:3067..3144 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig5882 3068..3144 - |
| 1681463817.4845445-CDS-Ecto-sp13_S_contig5882:3472..3562 | 1681463817.4845445-CDS-Ecto-sp13_S_contig5882:3472..3562 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig5882 3473..3562 - |
| 1681463817.5018306-CDS-Ecto-sp13_S_contig5882:4601..4730 | 1681463817.5018306-CDS-Ecto-sp13_S_contig5882:4601..4730 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig5882 4602..4730 - |
| 1681463817.5119386-CDS-Ecto-sp13_S_contig5882:4919..5062 | 1681463817.5119386-CDS-Ecto-sp13_S_contig5882:4919..5062 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig5882 4920..5062 - |
| 1681463817.5210674-CDS-Ecto-sp13_S_contig5882:5835..5896 | 1681463817.5210674-CDS-Ecto-sp13_S_contig5882:5835..5896 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig5882 5836..5896 - |
| 1681463817.5313218-CDS-Ecto-sp13_S_contig5882:6504..6564 | 1681463817.5313218-CDS-Ecto-sp13_S_contig5882:6504..6564 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig5882 6505..6564 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig5882.16393.1 >prot_Ecto-sp13_S_contig5882.16393.1 ID=prot_Ecto-sp13_S_contig5882.16393.1|Name=mRNA_Ecto-sp13_S_contig5882.16393.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=192bp
MLEGTFPIVYRAVTYFTPVEIYISENYPTSPPMCYIRPTAGMKLKVGHRH VDQSGLVYLPYLHEWAARTHNLVELIANMSGVFGAEPPLFAGSSREKPPI PDTSRPRTPPVIVSPEEVRKRTEKDLTAKLQSELQAMYAVLRTDMDSAFE TQGQLEESKEEVERDVEELSRRKKELERLLQARIRIGVRRS* back to topmRNA from alignment at Ecto-sp13_S_contig5882:2..8112- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp13_S_contig5882.16393.1 ID=mRNA_Ecto-sp13_S_contig5882.16393.1|Name=mRNA_Ecto-sp13_S_contig5882.16393.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=8111bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5882:2..8112- (Ectocarpus species13 EcNAP12_S_4_19m) CAGGATCCGAATCGCATTCGAACAGACGTGCTGAACGTTTGGAGACATCA
CCAGAGCCTGGTACCAAAGCGCGGGAGATTGAGTGAGTGCGATACGGAAT
GGCGGGCAGGCGGGAGGGGTACCGTAAATCACATTACGTCAGATACCACA
CCCCCTGGAACGATTTTGAAAGCTCGATTACTCCACAACGCACAGGGTGC
AGAAACCAAATGATGCGCTTTCGGAAGGCTCTAGACGAGACGTGTCCAAT
TTTCGGCGCCGTCGCTGCCTTTCTGCAGAATACTCGAGCTTGAATAACGA
CAGGGTGTGTGTTGTCTTACGTATGAAACCTATCACAGTATGTACAGCAG
TGCACCCTTGCACACGTATCCTGCTCACCAAGTCAAGTCGGGTCTAGCGA
CCAATACCAAAGCAAGCCATGCCCGGCATCATATGGGACCAATCGTATCA
CAGTAGAGGTCCCTGTTCAGTGCCGGTTGAAAAGCACTGGCGCCCGGTAT
TGTGCCGGTGTTTCGGGGGGCACACGCTGAATTTCCAACCATGCTCAATA
CTTTAAACTGTACAGGTCCGGCATTGTGCCAGTGAGTTTTCTGGTCGTTG
AACTGAAGAAGGATCACGATGTTGCCCTCAGTCTATTTTCGTGCTCGCGT
ATGTATGTGTGTAAAGCATATATGCAATACCAACCACTCTGTTTGGAAAT
ATGGTATATTGAACCGTTGGAATTTGAATCCGGATCGTCGGTACTTTTTC
AAGGAATGATTCATGCATTTCTCACATCTGCCTTAAGTTTTCCTGGTGCG
TCATGACCACCCTCCGTTAGTAGGGTACCGCTGTTGAAATCTGCCCAGCC
CTCATGTTGAGTTGAGTTCTTTCACGGACAGGGGAAACGCGTGCTATCTA
CGGTGCATTTCAGGGTGACAGAACAGAACATAACACCACGGCGAAACGTA
AGGGTCAAGAACTTCAGGTTCAATAAGATCGGAGCTTAAGAACTTGTCCG
TAAGAAATAGTGCTCAGTGCTCAGTTGAGCATCCTAAGAGCAAGCCTGCC
AATATACCGTACTCAACACCGGGGCGTGATGAGGCGGACACAAGCCCACG
TTACCAGTTCGTCGGGGTCCGTTTGTAGGAGTCATGGACGCCAAGCTATT
CGAAGTACAAGTATGGGTCGCGGTCACGAGAGAGATGTGTCGCGCCGGTA
GAGCCAAGTTTGTGTTGTACCTGTCGTAGCTCTACCCTGTTGTGTTGGTG
CTGCGTACCCTTGCGTTCGTTCGTGTGTGCGTGCGACTATTGTACGGGTA
TGTAGCCATCAATGCTGCCATACACGAACTGTAGTAGTAAGTCTCCTGTG
CATGTGTGCTGTCTCCGTTGCTTGCCGATTGCAACCACTGTCTGTTCGTT
TTGTAGCTGACAATACTGCTACACACGAACTGTCGGAAGTGTCCTGCGCA
TGTGTGCTGTCTCCGTTTGCTTGCTGATCGCAATCACTGCCTGTGAACGG
ACACGGACGAACGCAGCCTTGAACACGGGTCAGGAGTGCGAGCTGCTGAT
GCTGGAGGGAACGTTTCCTATCGTCTACCGTGCGGTGACTTACTTTACTC
CCGTGGAGGTAAGTCGACCAGTCAAGAAGCCACTCGAACAATTCAAGTAT
TCGGAAGACAGTCAACACACGTCAACAATCGAAGAGAGAAGAACGGTCGT
GTGAAGTTTTGTAGTGGTGGCATTTGGAGGGGTCAAAGCGTACTCTAGGG
CTAGGGGCGTTGGGCTTTGGCCAACACATCCATCGAACTCTCGTGTTTCC
TCCTGTTGGAGGTGTTGGAAGCCTTTCATGCTTGCCATGGATGCGTTGCT
TGCTTCCCGTGAGGTTGAGACGGAGGTGCAGTTTTTTTTTTTTTTTTGTA
TAGTAATTCAGCAATATTTTAGGCTGTAGCCACGGAAACGGTCCGTCCGC
ATTCAAGCGTGCAGTGCGTCATATGAGATGGTATGGAGTGGTATCGTACG
ATTTCTCATGTCATTTGTGGTATTCCTCTCTGCGCGGTACGTATCCCCGG
TAACATGTCCGTTCCTAGTATTTTGTTTCCTGCTTGTTCTTCAATGTTCT
TTCTTGTTTTGTTCGTGGTATCGTTCCGCAAGCGAACGACTTCCTCTCGC
GCTTTTTTTCCAAAATTTCGGCTTGGATTTTCCCGTATCTCCTTTCGTTT
TTCCTTTTTTCTCTAGATCTACATCTCGGAGAACTACCCCACGTCGCCCC
CCATGTGTTACATCAGACCAACTGCCGGTGAGACCTAGCTACCGTGCCTT
ACCATGGAGAAGTTCTGCTGTCCGCAGCTGCCGGGTTGTGCTTGCGGCTG
TGATCGAATCGTTGTGGCGAGGACGTTGGTTGTGTGGCCGTGGTAGCGGT
TGGCGTTTTCGTTGTTGTTGGTGGAGTTGTCTTGGCGTGCATGTTTCAAT
TCAAAGGCGTTGCTGGCCTTTGGCCCTGTACGTAATCTCGTGCACACCAT
TCTTCATATACAAGTAGTCTCCTGACATGAGAACGCACTTGGTGGCAAAA
CTCGACCAAATAAGGTACTTGTCATACTCCATAACTGTCGCTCATGATCA
TCGGTAGTGATGATGCAGCTAGCCTCCATGGTACCCGTTTGAGCGATCAT
CTCAACAGGGTCAGTACCATGTTATTCTACGGCCCTCTCCTTCCTCTCTT
TTGGCTTTGTGTCATTCCATCCTGTCGACTGACTGTCCTATCTATCCCCG
CTTTGCCTTAGGCCTCTCGCTTGTTTTGGTATCAAAACGGCAGCGATAAC
ATCATCTTTGCCGCCGGCTGCTCCATCTTCAATCTTTTGCGGGCATGTGT
CCTCTTCTGTTTTCAAATCAAGGCTTGATCGTGGTTCCGATAGAAGAGGG
CAGTGTGACAATGGCCTTGGCCAGTCCCCCTGATACGTTCGTCGCTTTCT
TCCACATGTGCCTCAACCCGACCCCTCATCACTACAAATGCTCACGTCAT
TGGACTACAAAGCCCGTGCGCGATTCTGCGTAACCCCTGGTGCCTTTCAG
GGATGAAGCTGAAGGTGGGGCACCGGCACGTGGACCAAAGCGGCCTCGTG
TACTTGCCGTACCTGCACGAGTGGGCCGCCAGGACGCACAACCTCGTGGA
GCTCATCGCCAACATGTCGGGCGTCTTTGGGGCGGAACCTCCGGTATGTG
TGCTCTGGAGTATGTTGTCTCAACCACTACTGTACTTGTACAGATGTTCT
TCTCGTTTGTGAGATGCGCTCTCGTGCTTAGCCCGGCCTGATTTTCTTGC
ACTCTCCCCTCTTCTTCTCTACTCACGCCTTCCCTGTTCCTCCGCCGTTG
GAACGAACGCTATGCTCGTGTGTTGCTCTCAGCTCTTCGCAGGATCGTCC
CGAGAGAAACCGCCAATCCCGGATACTTCTCGTCCGAGAACCCCCCCCGT
GATAGTAAGCCCGGAAGAGGTCCGCAAAAGGACGGAGAAGGACCTAACTG
CCAAGCTGCAGGTAGGTGTCTAGTGGTCCCGGTATGATGCGTCGGTTGGC
TTGGTGAAATGGCGTAGCACATGTTGAACTTGTTTCTTGCTCTGAACAAT
GCCGGTTGCCCGCTATAATTCCGGTTCGAAGAGGCTGGCACCTACCGGCA
TGTTCGGACGGGCTGACACCTACCGGCATTATAGCGGAACCCCTGCCGGT
CGCCCCGGTGGTCTGGTTGGTATCCTCGATACCTCCTATAGGTCAGGTAG
GGGTTCGAAACCCGGCGTGAGCGAGCTTTTCCAAAGTGATTTTTCTCTCG
CTTTCGCTCCTGGCCTAGTGGATAGCCCTGGTTCGTGTGTACACAGAGGG
AAGAGAGTGCTGAACTCTTCTCGCATTCAAAATCGGAGGCAACGTACCGC
AGGAGGGTAGGGTAGACAGGGGCCCTTCTGTGTGACAACGGGTTGGAGGA
AACGGCACTTGTGCTGTGAGCGCTGATTTGAAGTCTTCAAAAAAAAAAAA
CTGTAGGCTATGTAAAGGACGGCGTGGTTGGGGGTTAGTTTGGTGATGGA
CTCGGGAGACGGAGGGCAAAATAATTACGAGTATGCATAATAGTCGCTCT
CGCCGTGGACAGTCACTCTTTAACCAGGCGGTACAATAGCTTGGCGTGCT
AGGTTGGGGTGATTGACTCGAGAAACGGAGAGCATACGTGTGTCATGTTG
ATTTGAAACGACAAAAGACAGAAAACGAAAGGGGTTTCAATTTTAGAGGT
AGAGTTAGCAAGCAGTGCGTTAATTGAGGATTTAGAGACTTGCAGTAGGT
TGTGTGGTGGGTGGAACGCGGTCGCCCTTCATTTCTTTGTGTACGTCCGC
GTCACTCAAATGTGAATGCTTTGGTTTCACTAAGTTATATCCTTATTTAC
GAAGTATATTTTTCTCTATTGATAGCATTCTTTGTGTTGGGGAGGACAAA
ATAATCAATACAATCGCTCGCCGTTGTCAGTCTCATGTAGGGTCATCTTT
CTCACCCTTTCTCCCCAACCTCCGTGTGCTGCATGGTGCATTTTGTGCAG
AGCGAGCTACAGGCGATGTATGCGGTGCTGAGAACGGATATGGACTCAGC
GTTCGAAACCCAGGGTCAGCTGGAAGAGAGTAAGGAAGAGGTGGGTGTGG
CGGTGCTGGCGATTGTCGTACGTGTGTGTCTCGTCTCGGCTTCGAACCAC
AACACTTGTTTGCTTGAACAACTAAACACTTGACATGGCACACGGAAGTT
ACGAAACCTCGTTCTTGTTAACCTTTCGTGCCCCATGGCTTTGCTCGTGG
CTTGTTCTACGCCCAGCTCTCGAGGATGTTTCCACGATGGCGCCCTCGTT
TTGATTGTATCTCTTGCTGATTTTTTTTTGCCCGTTTGGTGGTGTTGTAT
TTTTTCTTTTTTCTTTCCTCGCGTTATGTTTTCATTCTTGTTTTGTGTTT
TTTTTTGTAACGTGCCAGGTAGAAAGGGACGTGGAGGAGCTTTCTCGTCG
CAAGAAGGAACTGGAGCGGCTGCTTCAGGCAAGGATAAGGATAGGGTATA
TGGATGAAGGATTCGCTAATCCGAGGATCTACGACTGTCATCGCTTCTGT
GGACTAGATGAAATGACTGGAAGTATATTCACCGCGAACTGCTACAGTTG
GCATCTGCCGTTCTGCATGCCGCTTCGTAGGCTTTGTTCGCTGTCGCTGC
TGTTGTTGTTTTCACAACAGGAAAAACGCGTTCCCCATACACGCGATACA
CACCCTCTCTCTGTCATCTCTACCGGTGCAGCCGACGCGGACGTCTTCCG
CGGTCACAACACTTGCCAAACCTCTGGTTTTTTTTTTCAATCTAGTCTAG
TCAAACGTAGGTGTCACGTCACTCAGGGTTCAAGTGCTCTTGTTTTTTGG
GTGTGAGGGTGACGAGTTTTTGTATACGTGTGTCTTCTGGCACGAGTACT
CATCGTGGGCCATGTTTTATTTATTTTTCTGTTCCTGGTTCTCGACCGAA
CATTGGCAATTGGTTGTGACTGCTGCCCTTGCCTGCAGACACGGATATGT
AGAACCGATGTGTATGCATACAATTCTGCTGCAGTTTCTGCTCACATACC
CTTCGTTTGGAGCGTTTCGATTCCTTCTTTTTTTCCCCTCCGCTTGCGAT
AACCCTCATGTCCGACTACCCATGTGCGCACATGTTCGACGGTGGACTTC
TCGTTTCGATGGAATTAATAATTAATTCAGGTATCGAAGGAGCGTGAGGC
GGAGTTAGACACGTACCTGCAGGACCGAAAAAAGGAAGGCGAGCCCTCTG
TGGACGAACTCATCGAGCCAAAAGATAACTTGTCAGACCAGTGAGTGAAC
GTCCGCTGTCCCCTGTCCCCTCCTAGGATAGCTTTGTCAGGCCAGTGAGT
GAACGTCCCCGATCCCCTGTCCCCTCCCCGCCGATGATAGCTTGTGTCAG
TTCAGTAATGAAAGTCTCCTGTCCCCTGCCCCCTACGCGCTGGGGAACAC
TCTAGTCTTGTGCTTTTGATCGATCGATCTCCTAGCCGAGAAAAACCACG
TGGACAAGAACGACTTGAATGTTCCCCACAAGGTCTCTTGAAGGTCACGT
CGCAAGGGGATTTGAGGTTCGTGGCGAGCTATGCGTACATTATTATTAAA
AGTACCAAACACACGCCGTCGTCTGTTTCGACCAACCGGTGACCCGATGC
CCTCTACGTATGATATTGCGATTACACGATTCGATTTGATATGATCTAAT
ATGATCCTCCACTTCCACCTCCACCTCCACCTCCCGGAGGGCTACCGTAC
ACAGAGCGACAGCGGAGTTTCTGGGCTTGTGATTGCAGCCCCCCCCTCTC
GAACGACGCTAAAGACTGTATACAGATTTGTGGATTTTTCTTTTTTGTTC
GATGAATTTCGCTGGGCTCTTGGAGAGGTAAACACGCCAGCTGTGTGAGT
CAGCTGTTCGAGCTTGCGAGACGTCACGGATGGTAGCTAGCAGTTGATTC
CTGCTTTACTTCAATCTTGCATCACAACACGCCTCGAGGACACCACCCCT
GTGGTTTGATGAGCCCACTCCGGAGGCGCGCCTTACATTGAATTTTTTAT
TGAATCGCCACGCCTAGGCAAGTCAGTGAGTGAGCTTTAAGGCTTGCCCT
CTCGCCCAAAAGGGTCAACGTCAACTCGCGCATTTTCTTACCAGAAAGTG
AAATGACGTCTCCCGTCCCCTGGCCATCCAAATACCACAAGCAGTACGTA
TATGTCTAGTTGCGTGCATGTCAATCCATTTTCCTTGTCTATGATCTAAC
TAAACAAAGAAAAGGGGGGGGGGCTTCCTGTAGTGAAACGTAGGGGTTGG
TCATGTTGGCTGTCGGCCGATCCCGGAGGAACAATTTCGGACCAGCAGCC
AGATAGTGTACCGTCTAGGTCTCCCACGTAGTTTCTCGGATCATGTTACA
CGCACGTTTGAAACATGACTGATGTGGGCATTCGGGAGAACTTTCGGGCT
TGTGACGGAGATGTGGTCATCGTCGTCTTTTTTTTCTTTTTTTTAAAACG
TTTATGTAAAACCACAGAAAGACTACCCGTTCGAGATGTAACTACTGTAC
AGTTGAAAGGGATTTGCTGAAGTCCTTGTGGTTGCCCCCGTTCGTCATCC
TCCGTGCTGCCATTGCTGCCAATTGTGTTGCGTTCTAGGATGCTCCGACT
TGTCGCGGAGAATGCAGCGTTGGAGGACGCACTTTACTACCTGGATCTTG
GTGTAACCGACTCTGTGATCACGGTGGACGTGTTCTTGCGGGAGATCAGA
AGGCTGGCACGGAAGCAGTTCGTGGCTAGAGCGACCATGAAGAAGGTCAT
TCCTTTGTATTCTTTTTTTTTCGAGAGCCTTGATGAGGAGAGCTTTTGTC
GTTGGACGCACGCCTCTGCTCATGTTTGACTACCTTCAACCAACGATACT
CACCGCACGATCAAGATCATGTAAAAACACATGACACAAAGAACTCGATC
AGTTAGTAATCTGTTGGTGCATGGACATCGCTATCTCAGCAAGATGCCTA
CCATGTTCGTTCATCAATCTCACCCCATTTTATCGATCGTTATCAAATCT
GATATTTTATCCAGTGAGCCAATCTTTTGCTGAAATCCCTCCTAATATTT
TTGGACATGACATGTGTGCACTCGTCTCTCTTTCGGCAGACGTTCTTCCT
CCTCACCCACCTGTTTCGCGCCTGCCTGCCTACGTTCCATGTTTTGCCTT
CTACATTCTATATCTTGCCCTCTTCGATGTTCGCGGTTATTTTTCATTCC
ATATATGTACATCTCGGTTGTGTGTTGGGCTGTACAGCGAAACGCCATCG
AAAAGAGTTTTGACGAGACCCTGACTGTCTGGTTTGACCCTAATGACTGT
CTGGTTTGACCCTATTTGCTTATTTGTGTCGTGACAGGTCGAGCGGGCTC
AGCACGCACTAAAAGCGCAAAGAGCGAGTTTCAATGCGCAGCAGCAGCAC
CAGCAGGCGGCGAGCAGAGCCAGCGGCGGCTACTACCCCCACCTCCCCCC
GCAACAACAGCAGCAGCATCAACAACCTGGTGCGCGTGGGGGGTCGGCGG
CATACATGGGC back to topCoding sequence (CDS) from alignment at Ecto-sp13_S_contig5882:2..8112- >mRNA_Ecto-sp13_S_contig5882.16393.1 ID=mRNA_Ecto-sp13_S_contig5882.16393.1|Name=mRNA_Ecto-sp13_S_contig5882.16393.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=576bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5882:2..8112- (Ectocarpus species13 EcNAP12_S_4_19m) ATGCTGGAGGGAACGTTTCCTATCGTCTACCGTGCGGTGACTTACTTTAC TCCCGTGGAGATCTACATCTCGGAGAACTACCCCACGTCGCCCCCCATGT GTTACATCAGACCAACTGCCGGGATGAAGCTGAAGGTGGGGCACCGGCAC GTGGACCAAAGCGGCCTCGTGTACTTGCCGTACCTGCACGAGTGGGCCGC CAGGACGCACAACCTCGTGGAGCTCATCGCCAACATGTCGGGCGTCTTTG GGGCGGAACCTCCGCTCTTCGCAGGATCGTCCCGAGAGAAACCGCCAATC CCGGATACTTCTCGTCCGAGAACCCCCCCCGTGATAGTAAGCCCGGAAGA GGTCCGCAAAAGGACGGAGAAGGACCTAACTGCCAAGCTGCAGAGCGAGC TACAGGCGATGTATGCGGTGCTGAGAACGGATATGGACTCAGCGTTCGAA ACCCAGGGTCAGCTGGAAGAGAGTAAGGAAGAGGTAGAAAGGGACGTGGA GGAGCTTTCTCGTCGCAAGAAGGAACTGGAGCGGCTGCTTCAGGCAAGGA TAAGGATAGGCGTGAGGCGGAGTTAG back to top
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