mRNA_Ecto-sp13_S_contig5881.16392.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig5881.16392.1 vs. uniprot
Match: D8LNS2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNS2_ECTSI) HSP 1 Score: 471 bits (1212), Expect = 2.510e-163 Identity = 235/303 (77.56%), Postives = 244/303 (80.53%), Query Frame = 3
Query: 213 ELEEGGVDSAWTTEGGVPDAVFYPRVKLDQLQEATTEELRIEAIPANTDYNSEGNYVEDGRGQCVIFRTSAATAFVGQERDPHEYLDYTHLD-MYWYPGGKF*NSTTCVADGVERADHRECVYGFLSDPEDPTAISTGFPLSYSCITNTFNTHIFNTF-------------------------------VNPNITMPNAHLSLEMKQQFDSWEIITESNPYEFAEMFGNIGGFWDLLLILWPLCFVAATQEDPHLKPRTFKMSVVRGAERAVGVSKVIARAAPIRPFRTMNVAPAADDLQDQE 1025
ELEEG VDSAW TEGGVPDAVFYPRVKLDQLQE TTEEL+IEAIP NTDY+SEGNYVEDGRGQCVIF+TSAAT FVGQERDPHEYLDY HLD MYWYPGGKF NSTTCV DGVE ADHRE VYGFLSDPEDP AISTGFPLSYSCITNT NTHIFNT VNPN+TMP AHLSLEMKQQ DSWEIITESNPYEFAEMFGNIGGFWDLLLILWPLCFVA TQ+DPHLKPRTFK SV+RGAERA GV+KVIARAAPIR +M PA D +DQE
Sbjct: 86 ELEEGCVDSAWMTEGGVPDAVFYPRVKLDQLQETTTEELQIEAIPENTDYDSEGNYVEDGRGQCVIFKTSAATTFVGQERDPHEYLDYVHLDQMYWYPGGKFGNSTTCVVDGVEWADHREWVYGFLSDPEDPAAISTGFPLSYSCITNTSNTHIFNTLGIGLTNQNKFMEDDISSYKALFTNFGVHKNTVNPNVTMPYAHLSLEMKQQADSWEIITESNPYEFAEMFGNIGGFWDLLLILWPLCFVATTQQDPHLKPRTFKKSVIRGAERAAGVTKVIARAAPIRHSSSMTATPAVDGFEDQE 388
BLAST of mRNA_Ecto-sp13_S_contig5881.16392.1 vs. uniprot
Match: D8LNQ3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNQ3_ECTSI) HSP 1 Score: 438 bits (1126), Expect = 2.600e-150 Identity = 221/303 (72.94%), Postives = 234/303 (77.23%), Query Frame = 3
Query: 213 ELEEGGVDSAWTTEGGVPDAVFYPRVKLDQLQEATTEELRIEAIPANTDYNSEGNYVEDGRGQCVIFRTSAATAFVGQERDPHEYLDYTHLDMYWYPGGKF*NSTTCVADGVERADHRECVYGFLSDPEDPTAISTGFPLSYSCITNTFNTHIFNTF-------------------------------VNPNITMPNAHLSLEMKQQFDSWEIITESNPYEFAEMFGNIGGFWDLLLILWPLCFVAATQEDPHLKPRTFKMSVVRGAERAVGVSKVIARAAPIRPFRTMNVAPAADDLQDQEE 1028
ELEE VDSAW TEGG PDAVFYPR KLDQL + TTEE +I AIP T+++SEGN+VEDGRG CVIF TSAAT FVGQERD HEYLDY HLDMYWYPGGKF NSTTCVA+GVE ADHRE VYGFLSDPED TAISTGFPLSYSCITNT NTHIFNT VNPN+TMP AHLSLEMKQQ DSWEIITESNPYEFAEMFGNIGGFWDLLLILWPLCFV ATQ+DPHLKPRTFK SV+RGAERA GV+KVIARAAP+R M P D +DQEE
Sbjct: 87 ELEEECVDSAWMTEGGEPDAVFYPREKLDQLHQVTTEERKIAAIPDLTNFDSEGNFVEDGRGHCVIFETSAATDFVGQERDSHEYLDYIHLDMYWYPGGKFGNSTTCVAEGVEWADHREWVYGFLSDPEDSTAISTGFPLSYSCITNTSNTHIFNTLGIGLTNQNKFMEDDISSYKALFTNFGVHKNTVNPNVTMPYAHLSLEMKQQADSWEIITESNPYEFAEMFGNIGGFWDLLLILWPLCFVTATQQDPHLKPRTFKKSVIRGAERAAGVTKVIARAAPVRHSNAM---PGVDGFEDQEE 386
BLAST of mRNA_Ecto-sp13_S_contig5881.16392.1 vs. uniprot
Match: A0A6H5L518_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L518_9PHAE) HSP 1 Score: 427 bits (1099), Expect = 7.870e-146 Identity = 217/304 (71.38%), Postives = 234/304 (76.97%), Query Frame = 3
Query: 210 VELEEGGVDSAWTTEGGVPDAVFYPRVKLDQLQEATTEELRIEAIPANTDYNSEGNYVEDGRGQCVIFRTSAATAFVGQERDPHEYLDYTHLDMYWYPGGKF*NSTTCVADGVERADHRECVYGFLSDPEDPTAISTGFPLSYSCITNTFNTHIFNTF-------------------------------VNPNITMPNAHLSLEMKQQFDSWEIITESNPYEFAEMFGNIGGFWDLLLILWPLCFVAATQEDPHLKPRTFKMSVVRGAERAVGVSKVIARAAPIRPFRTMNVAPAADDLQDQEE 1028
+ELEE V+SAWTTEGGVP+AVFYPRV+LDQ QE TTE+L+IEAIP NTD +SEGN +EDGRG+CVIFRTSAATAFVGQERDPHE+LDY LDMYW PGG STTCV DGVE DHRE VYGFLSDP+DP+AISTG LSYSCITNT NTH FNT VNPNIT P AHLSLEMKQQFDSWEIITESNPYEFAEMFGNIGGFWDLLLILWPLCFVAA Q+DPHLKPR+FK SVVRGAERA VSK IARAAPI P T + A A D +D+EE
Sbjct: 109 LELEEKCVNSAWTTEGGVPNAVFYPRVQLDQEQEITTEQLQIEAIPENTDVDSEGNSLEDGRGKCVIFRTSAATAFVGQERDPHEFLDYILLDMYWNPGGTSGKSTTCVPDGVEWTDHREWVYGFLSDPDDPSAISTGVHLSYSCITNTSNTHTFNTMGIGLTQQKKFMDDDKSSYKALFTNFGVHKNVVNPNITTPYAHLSLEMKQQFDSWEIITESNPYEFAEMFGNIGGFWDLLLILWPLCFVAAAQQDPHLKPRSFKKSVVRGAERAASVSKAIARAAPINPSITKSAASAVDGFEDEEE 412
BLAST of mRNA_Ecto-sp13_S_contig5881.16392.1 vs. uniprot
Match: A0A6H5JV19_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV19_9PHAE) HSP 1 Score: 403 bits (1036), Expect = 1.060e-136 Identity = 211/347 (60.81%), Postives = 232/347 (66.86%), Query Frame = 3
Query: 213 ELEEGGVDSAWTTEGGVPDAVFYPRVKLDQLQEATTEELRIEAIPANTDYNSEGNYVEDGRGQCVIFRTSAATAFVGQERDPHEYLDYTHLD--------------------------------------------MYWYPGGKF*NSTTCVADGVERADHRECVYGFLSDPEDPTAISTGFPLSYSCITNTFNTHIFNTF-------------------------------VNPNITMPNAHLSLEMKQQFDSWEIITESNPYEFAEMFGNIGGFWDLLLILWPLCFVAATQEDPHLKPRTFKMSVVRGAERAVGVSKVIARAAPIRPFRTMNVAPAADDLQDQEE 1028
ELEE V SAW TEGG PDAVFYPRVKLDQL + TTEE +I AIP T+++SEGN E+GRG CV+F TSA T F+GQERDPHEYLDY HLD MYWYPGGKF NSTTCV +GVE ADHRE VYGFLSDPEDPTAISTGFPLSYSCITNT NTHIFNT VNPNITMP AH+SLEMKQQ DSWEIITESNPYEFAEMFGNIGGFWDLLLILWPLCFVAATQ+DPHLKPR+F S VRGA+R GV+K++ARAAP++ + + A A D +DQEE
Sbjct: 37 ELEEECVASAWMTEGGEPDAVFYPRVKLDQLHQVTTEERQINAIPDLTNFDSEGNEQENGRGHCVVFETSAITDFLGQERDPHEYLDYVHLDGILPVGLVANGSLSQHELEPVIGSTVPLSRPCRPDKRMFFADEQMYWYPGGKFGNSTTCVNEGVEWADHREWVYGFLSDPEDPTAISTGFPLSYSCITNTSNTHIFNTLGVGLTNQIKFMSDDISSYKALFTNFGVHKNAVNPNITMPYAHVSLEMKQQADSWEIITESNPYEFAEMFGNIGGFWDLLLILWPLCFVAATQQDPHLKPRSFTKSAVRGAQRVAGVTKMVARAAPVKHTSSTSHASAVDGFEDQEE 383
BLAST of mRNA_Ecto-sp13_S_contig5881.16392.1 vs. uniprot
Match: D8LNQ1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNQ1_ECTSI) HSP 1 Score: 354 bits (908), Expect = 2.830e-118 Identity = 189/272 (69.49%), Postives = 201/272 (73.90%), Query Frame = 3
Query: 213 ELEEGGVDSAWTTEGGVPDAVFYPRVKLDQLQEATTEELRIEAIPANTDYNSEGNYVEDGRGQCVIFRTSAATAFVGQERDPHEYLDYTHLDMYWYPGGKF*NSTTCVADGVERADHRECVYGFLSDPEDPTAISTGFPLSYSCITNTFNTHIFNTFVNPNITMPNAHLSLEMKQQFDSWEIITESNPYEFAEMFGNIGGFWDLLLILWPLCFVAATQEDPHLKPRTFKMSVVRGAERAVGVSKVIARAAPIRPFRTMNVAPAADDLQDQEE 1028
ELEE VDSAW TEGG PDAVFYPRVKLDQLQE TTEEL+IEAIP NTDY+SEGNYVEDGRGQCVIFRTSAATAFVGQERDPHEYLDY HLD GV + + + ED + SY + F H VNPNITMP A+LSLEMKQQ DSWEIITESNPYEFAEMFGNIGGFWDLLLILWPLCFVA TQ+DPHLKPRTFK SVVRGAERA GV+KVIARAAPIR RT+N A AD +DQEE
Sbjct: 74 ELEEECVDSAWMTEGGEPDAVFYPRVKLDQLQETTTEELQIEAIPENTDYDSEGNYVEDGRGQCVIFRTSAATAFVGQERDPHEYLDYIHLD------------------GVGLTNQNKLM-------EDDQS-------SYKALFTNFGHH--KNVVNPNITMPYAYLSLEMKQQADSWEIITESNPYEFAEMFGNIGGFWDLLLILWPLCFVATTQQDPHLKPRTFKKSVVRGAERAAGVTKVIARAAPIRRSRTVNAASVADGFEDQEE 311
BLAST of mRNA_Ecto-sp13_S_contig5881.16392.1 vs. uniprot
Match: D7FXH8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXH8_ECTSI) HSP 1 Score: 275 bits (704), Expect = 1.380e-86 Identity = 148/293 (50.51%), Postives = 185/293 (63.14%), Query Frame = 3
Query: 210 VELEEGGVDSAWTTEGGVPDAVFYPRVKLDQLQEATTEELRIEAIPANTDYNSEGNYVEDGRGQCVIFRTSAATAFVGQERDPHEYLDYTHLDMYWYPGG-KF*NSTTCVADGVERADHRECVYGFLSDPEDPTAISTGFPLSYSCITNTFNTHIFNTF-------------------------------VNPNITMPNAHLSLEMKQQFDSWEIITESNPYEFAEMFGNIGGFWDLLLILWPLCFVAATQEDPHLKPRTFKMSVVRGAERAVGVSKVIARAAPIRPFRTMNV 992
+ LE G V+S+W TE G P+A+FY DQ T+ L IEA +T S + GRG CV F+TSAATAFVGQERDP EYLDY LDMYWYP G + +STTCV DG E HRE VY FL+DPED T +ST LSYSCIT+ +H+FN+ + +IT P A LS+E+KQQFDSWEIITE++P+EFAE+ GNIGGFWDL+LILWPL FVAA+Q +P+LKPR F SV R ERA G++K +A + P+R ++ +
Sbjct: 73 ITLELGCVESSWETEAGPPNAIFYNSEGTDQ---NATDPLEIEATWVDT---SAIEGIVKGRGLCVEFKTSAATAFVGQERDPDEYLDYILLDMYWYPSGNETTDSTTCVEDGEEWEPHREWVYAFLTDPEDVTMVSTAVQLSYSCITSASTSHVFNSVGIGLTNQIKYAADDVSSYKAVSINSGVYKDQADADITKPYARLSMELKQQFDSWEIITEADPFEFAEILGNIGGFWDLILILWPLFFVAASQPEPNLKPRNFAKSVTRTVERASGITKTVANSGPMRRVESIEM 359
BLAST of mRNA_Ecto-sp13_S_contig5881.16392.1 vs. uniprot
Match: D8LNQ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNQ0_ECTSI) HSP 1 Score: 262 bits (669), Expect = 5.690e-83 Identity = 142/233 (60.94%), Postives = 150/233 (64.38%), Query Frame = 3
Query: 213 ELEEGGVDSAWTTEGGVPDAVFYPRVKLDQLQEATTEELRIEAIPANTDYNSEGNYVEDGRGQCVIFRTSAATAFVGQERDPHEYLDYTHLDMYWYPGGKF*NSTTCVADGVERADHRECVYGFLSDPEDPTAISTGFPLSYSCITNTFNTHIFNTF-------------------------------VNPNITMPNAHLSLEMKQQFDSWEIITESNPYEFAEMFGNIGGFW 818
ELEE VDSAW TEGG PDAVFYPRVKLDQL + TTEE +I AIP T+++SEGN E+ MYWYPGGKF NSTTCVA+GVE ADHRE VYGFLSDPEDPTAISTGFPLSYSCITNT NTHIFNT VNPNITMP AH+SLEMKQQ DSWEIITESNPYEFAEMFGNIGGFW
Sbjct: 74 ELEEECVDSAWMTEGGKPDAVFYPRVKLDQLHQVTTEERQINAIPDLTNFDSEGNEQEN---------------------------------MYWYPGGKFGNSTTCVAEGVEWADHREWVYGFLSDPEDPTAISTGFPLSYSCITNTSNTHIFNTLGIGLTNQNKFMSDDISSYKALFTNFGVHKNTVNPNITMPYAHVSLEMKQQADSWEIITESNPYEFAEMFGNIGGFW 273
BLAST of mRNA_Ecto-sp13_S_contig5881.16392.1 vs. uniprot
Match: D8LNQ2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNQ2_ECTSI) HSP 1 Score: 226 bits (575), Expect = 8.570e-71 Identity = 104/118 (88.14%), Postives = 110/118 (93.22%), Query Frame = 3
Query: 213 ELEEGGVDSAWTTEGGVPDAVFYPRVKLDQLQEATTEELRIEAIPANTDYNSEGNYVEDGRGQCVIFRTSAATAFVGQERDPHEYLDYTHLDMYWYPGGKF*NSTTCVADGVERADHR 566
ELEEG VDSAW TEGGVPDAVFYPRVKLDQLQE TTEEL+IEAIP NTD++SEGNYVEDGRGQCVIF+TS+ATAFVGQERDPHEYLDY HLDMYWYPGGKF NSTTCVADGV+ DHR
Sbjct: 25 ELEEGCVDSAWMTEGGVPDAVFYPRVKLDQLQETTTEELQIEAIPENTDFDSEGNYVEDGRGQCVIFKTSSATAFVGQERDPHEYLDYIHLDMYWYPGGKFGNSTTCVADGVQWTDHR 142
BLAST of mRNA_Ecto-sp13_S_contig5881.16392.1 vs. uniprot
Match: D8LNP9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNP9_ECTSI) HSP 1 Score: 210 bits (535), Expect = 1.180e-64 Identity = 97/118 (82.20%), Postives = 106/118 (89.83%), Query Frame = 3
Query: 213 ELEEGGVDSAWTTEGGVPDAVFYPRVKLDQLQEATTEELRIEAIPANTDYNSEGNYVEDGRGQCVIFRTSAATAFVGQERDPHEYLDYTHLDMYWYPGGKF*NSTTCVADGVERADHR 566
ELE+ V SAW TEGG PDAVFYPRVKL Q QE TTE+L+IEAIP NTD++SEGNYVEDGRGQCV+F+TSAATAFVGQERDPHE+LDY HLDMYWYPGG+F NSTTCVADGVE ADHR
Sbjct: 32 ELEKQCVHSAWMTEGGEPDAVFYPRVKLGQEQETTTEQLQIEAIPENTDFDSEGNYVEDGRGQCVVFKTSAATAFVGQERDPHEFLDYVHLDMYWYPGGEFGNSTTCVADGVEWADHR 149
BLAST of mRNA_Ecto-sp13_S_contig5881.16392.1 vs. uniprot
Match: D8LMD2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMD2_ECTSI) HSP 1 Score: 186 bits (471), Expect = 3.800e-52 Identity = 111/271 (40.96%), Postives = 147/271 (54.24%), Query Frame = 3
Query: 213 ELEEGGVDSAWTTEGGVPDAVFYPRVKLDQLQEATTEELRIEAIPANTDYNSEGNYVEDGRGQCVIFRTSAATAFVGQERDPHEYLDYTHLDMYWYPGGKF*NSTTCVADGVERADHRECVYGFLSDPEDPTA--ISTGFPLSYSCITNTFNTHIFNTFVNPNITM--------------------------------PNAHLSLEMKQQFDSWEIITESNPYEFAEMFGNIGGFWDLLLILWPLCFVAATQEDPHLKPRTFKMSVVRGAE 923
ELEE ++SA T G AVFYP + +Q IP E G CV F TS + F+GQER+ YLDY LDMYWYPGG +S TCV +G E H E +Y L D P + +STG + YSCITN ++H F T+V +T+ P A LSL+ +Q+ +S E+ITE++P++ AEMFGN+GGFWDLL+++WP+ FVAA+++DPHLKPR FK SV +G E
Sbjct: 74 ELEEECMESAQLTGWGNTSAVFYPGGEYEQ------------TIPGVGMLTPED-------GWCVEFETSTISQFLGQERNASYYLDYLLLDMYWYPGGTESDSNTCVVEGWE--PHSEWMYVKLKDSGYPESGLVSTGIQVPYSCITNVSSSHSF-TYVGMGVTIEERLGEEPVATNKALSVSTATHKDKVNAAIDKPYAQLSLQFQQEPNSLEVITENDPFDLAEMFGNVGGFWDLLMLVWPIFFVAASRQDPHLKPRNFKKSVAKGLE 322 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5881.16392.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 23
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig5881.16392.1 >prot_Ecto-sp13_S_contig5881.16392.1 ID=prot_Ecto-sp13_S_contig5881.16392.1|Name=mRNA_Ecto-sp13_S_contig5881.16392.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=118bp MSVVAIIAYSVWLCYKAAEKAKSPGTSFVLTNEVNKNPDLWICLCNNYGCback to top mRNA from alignment at Ecto-sp13_S_contig5881:3205..8738+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig5881.16392.1 ID=mRNA_Ecto-sp13_S_contig5881.16392.1|Name=mRNA_Ecto-sp13_S_contig5881.16392.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5534bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5881:3205..8738+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5881:3205..8738+ >mRNA_Ecto-sp13_S_contig5881.16392.1 ID=mRNA_Ecto-sp13_S_contig5881.16392.1|Name=mRNA_Ecto-sp13_S_contig5881.16392.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=354bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5881:3205..8738+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |