mRNA_Ecto-sp13_S_contig588.16389.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig588.16389.1 vs. uniprot
Match: D7FVD1_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVD1_ECTSI) HSP 1 Score: 446 bits (1147), Expect = 6.110e-141 Identity = 236/246 (95.93%), Postives = 241/246 (97.97%), Query Frame = 1
Query: 1 ALQVKGWMAGIIARSPKLSDIFGSSWSFGQMSTVMRSNMSMVHEFELSMISMVDLKHKVARKLIKHRPCLQKENVQVVHDRALAMGDDDPLKPDYSRFLHSEKKRSFSNAVSLRHGHLENLSHWRDTVRIKAVTKIQNLFRGKLARQAAERMAKKQAFLCARAMAVEDTRQRIAAEIWKREAASGVGRLKWDAKVRMKQAKLRAAGENVDRQQVVEAIIEESVRAAQDGVMERFDEIAQDRGFDED 738
ALQVK WMAGIIARSPKLSDIFGSSWSFGQMSTVMR MSMVHEFELSMISMVDLKHKVARKLIKHRPCLQKENVQV+HDRALAMGDDDPLKPDYSRFLHS+KK+SFSNAVSL HGHLENLSHWRDTVRIKAVTKIQNLFRGK ARQAAERMAKKQAFLCARAMAVEDTRQRIAAEIWKREAASGVGRLKWDAKVRMKQAKLRAAGENVDRQQVVEAIIEESV+AAQDGVMERFDEIA+DRGFDED
Sbjct: 395 ALQVKTWMAGIIARSPKLSDIFGSSWSFGQMSTVMRCKMSMVHEFELSMISMVDLKHKVARKLIKHRPCLQKENVQVMHDRALAMGDDDPLKPDYSRFLHSDKKKSFSNAVSLSHGHLENLSHWRDTVRIKAVTKIQNLFRGKQARQAAERMAKKQAFLCARAMAVEDTRQRIAAEIWKREAASGVGRLKWDAKVRMKQAKLRAAGENVDRQQVVEAIIEESVQAAQDGVMERFDEIARDRGFDED 640
BLAST of mRNA_Ecto-sp13_S_contig588.16389.1 vs. uniprot
Match: A0A6H5K633_9PHAE (Clu domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K633_9PHAE) HSP 1 Score: 357 bits (917), Expect = 6.140e-110 Identity = 184/192 (95.83%), Postives = 189/192 (98.44%), Query Frame = 1
Query: 7 QVKGWMAGIIARSPKLSDIFGSSWSFGQMSTVMRSNMSMVHEFELSMISMVDLKHKVARKLIKHRPCLQKENVQVVHDRALAMGDDDPLKPDYSRFLHSEKKRSFSNAVSLRHGHLENLSHWRDTVRIKAVTKIQNLFRGKLARQAAERMAKKQAFLCARAMAVEDTRQRIAAEIWKREAASGVGRLKWDAK 582
+VK WMAGIIARSPKLSDIFGSSWSFGQMSTVMR +MSMVHEFELSMISM+DLKHKVARKLIKHRPCLQKENVQVVHDRALAMGDDDPLKPDYSRFLHS++KRSFSNAVSLRHGHLENLSHWRDTVRIKAVTKIQNLFRGKLARQAAE MAKKQAFLCARAMAVEDTRQRIAAEIWKREAASGVGRLKWDAK
Sbjct: 181 KVKAWMAGIIARSPKLSDIFGSSWSFGQMSTVMRCSMSMVHEFELSMISMIDLKHKVARKLIKHRPCLQKENVQVVHDRALAMGDDDPLKPDYSRFLHSDQKRSFSNAVSLRHGHLENLSHWRDTVRIKAVTKIQNLFRGKLARQAAETMAKKQAFLCARAMAVEDTRQRIAAEIWKREAASGVGRLKWDAK 372
BLAST of mRNA_Ecto-sp13_S_contig588.16389.1 vs. uniprot
Match: A0A2R5GJD7_9STRA (F-box/LRR-repeat protein 2 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GJD7_9STRA) HSP 1 Score: 176 bits (447), Expect = 7.800e-47 Identity = 102/248 (41.13%), Postives = 154/248 (62.10%), Query Frame = 1
Query: 1 ALQVKGWMAGIIARSPKLSDIFGSSWSFGQMSTVMRSNMSMVHEFELSMISMVDLKHKVARKLIKHRPCLQKENVQVVHDRALAMGDDDPLKPDYSRFLHSEKKRSFSNAVSLRHGHLENLSHWRDTVRIKAVTKIQNLFRGKLARQAAERMAKKQAFLCARAMAVEDTRQRIAAEIWKREA--ASGVGRLKWDAKVRMKQAKLRAAGENVDRQQVVEAIIEESVRAAQDGVMERFDEIAQDRGFDED 738
++Q M+ +I S LS +F W++ +S R+ MS + ++EL M+S+ DL ++AR + +RP L E Q +H+RALAMG +DPLKPDY++F+ K + SN V L HG L N+ +++ V A +Q +R KL R+ AER K++AF A +A+E++R ++ E KREA A+ VGR+KWDA VRM+Q KLRA G+ R++VV + EE V+ AQ V E F+++ +RG D
Sbjct: 604 SMQFSSCMSHLICISEDLSKVFNVPWAYANLSEWQRTRMSYIKKYELGMLSLRDLNKRIARLWVTYRPLLALEQKQTMHERALAMGRNDPLKPDYAKFMTRRKHKLQSNVVPLEHGGLGNILYYQSRVTYNAAMMVQAAWRSKLGRRRAEREVKRRAFFAAWRVALEESRAKVEREFAKREAQAANTVGRMKWDATVRMRQGKLRALGQAFSREEVVALLTEEEVKVAQTSVDEEFEKMKLERGIKND 851
BLAST of mRNA_Ecto-sp13_S_contig588.16389.1 vs. uniprot
Match: A0A835YMZ6_9STRA (Clu domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMZ6_9STRA) HSP 1 Score: 168 bits (426), Expect = 5.020e-44 Identity = 99/246 (40.24%), Postives = 145/246 (58.94%), Query Frame = 1
Query: 7 QVKGWMAGIIARSPKLSDIFGSSWSFGQMSTVMRSNMSMVHEFELSMISMVDLKHKVARKLIKHRPCLQKENVQVVHDRALAMGDDDPLKPDYSRFLHSEKKRSFSNAVSLRHGHLENLSHWRDTVRIKAVTKIQNLFRGKLARQAAERMAKKQAFLCARAMAVEDTRQRIAAEIWKREA-ASGVGRLKWDAKVRMKQAKLRA---AGENVDRQQVVEAIIEESVRAAQDGVMERFDEIAQDRGFD 732
+ K W+A ++ R +LS+ FG+ W + S +MR+ + + EL +I++ DLK+++AR +HRP L E VH+RALA GD DPLKPDYSRFL + ++ S AV L HGHL +L HWR + TK+QNL+RG+ A + + +REA A+GV R++WDAKVR++QAK+RA AG+ V R + ++EE+ AA+ V RFDEIA++RG +
Sbjct: 489 EAKRWLAALVRRDRRLSEAFGAPWGAAEASALMRARTAPARQLELGLITLADLKYRLARDGARHRPQLDPERRLAVHERALARGDGDPLKPDYSRFLAAARRACSSAAVPLAHGHLGSLPHWRARAAQRGATKLQNLWRGRRAXXXXXXXXXXXXXXXXXXXXXXXXXXXMELDFRRREAEAAGVARMRWDAKVRVRQAKMRASGSAGDGVTRADALREMLEETAAAAEADVRRRFDEIARERGIE 734
BLAST of mRNA_Ecto-sp13_S_contig588.16389.1 vs. uniprot
Match: W2NLG0_PHYPR (Clu domain-containing protein n=10 Tax=Phytophthora TaxID=4783 RepID=W2NLG0_PHYPR) HSP 1 Score: 159 bits (401), Expect = 1.120e-40 Identity = 95/234 (40.60%), Postives = 146/234 (62.39%), Query Frame = 1
Query: 34 IARSPKLSDIFGSSWSFGQMSTVMRSNMSMVHEFELSMISMVDLKHKVARKLIKHRPCLQKENVQVVHDRALAMGDDDPLKPDYSRFLHSEKKRSFSNAVSLRHGHLENLSHWRDTVRIKAVTKIQNLFRGKLARQAAERMAKKQAFLCARAMAVEDTRQRIAAEIWKREA--ASGVGRLKWDAKVRMKQAKLRAAGENVDRQQVVEAIIEESVRAAQDGVMERFDEIAQDRGF 729
I S L + G SW + Q+S + +MS + ++ L +I++ DLK+ VAR++ + R L ++H+RALAMG++DPLK DYS++L + + SN V L HG NL H+R V +++ K+Q +R K RQ A A+KQAF AR +A+E++RQ+I E R+A A V ++K +AK+RMKQ KLR G N R+Q++ ++EESV+ AQ V RF E+ ++ G+
Sbjct: 784 IESSKYLCGLLGLSWKYQQLSRFVIQHMSPIQQYRLGLINVNDLKYTVARQMTQPREELSCWKKAIIHERALAMGENDPLKTDYSKYLPKRRSKLLSNVVPLDHGGYRNLLHYRMEVILRSAVKLQATWRAKKGRQVARLAAEKQAFYHARGLALEESRQKIEKEWSDRDAKPAHSVDKMKLEAKIRMKQVKLRTKGNNFSREQILALMVEESVQIAQKEVENRFREMEEELGY 1017
BLAST of mRNA_Ecto-sp13_S_contig588.16389.1 vs. uniprot
Match: A0A662XGU1_9STRA (Clu domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XGU1_9STRA) HSP 1 Score: 158 bits (400), Expect = 1.530e-40 Identity = 92/235 (39.15%), Postives = 148/235 (62.98%), Query Frame = 1
Query: 31 IIARSPKLSDIFGSSWSFGQMSTVMRSNMSMVHEFELSMISMVDLKHKVARKLIKHRPCLQKENVQVVHDRALAMGDDDPLKPDYSRFLHSEKKRSFSNAVSLRHGHLENLSHWRDTVRIKAVTKIQNLFRGKLARQAAERMAKKQAFLCARAMAVEDTRQRIAAEIWKREA--ASGVGRLKWDAKVRMKQAKLRAAGENVDRQQVVEAIIEESVRAAQDGVMERFDEIAQDRGF 729
++ RS L ++ G W + +S + +M+ +H++ L +I++ DLK+ VAR++++ R L + +H+RALAMG++DPLK DYS++L + + SN V L HG NL H+R V +K+ K+Q +R K R+ A A+KQAF AR +A+E+ RQ+I E +R+A A V ++K++AK+RMKQ KLR G R+QV+ + EE+V+ AQ V RF E+ ++ G+
Sbjct: 800 LVERSKYLCELLGHPWKYELLSRFVIQHMNAIHQYRLGLININDLKYTVARQMVQPREELTRWKKNEIHERALAMGENDPLKTDYSKYLPKRRTKLLSNVVPLDHGGYRNLLHYRMEVILKSAVKLQTSWRAKKGRRVARLAAEKQAFYHARGLALEEARQKIEKEWGERDAKPAHSVDKMKFEAKIRMKQVKLRTKGNAFTREQVLALMTEEAVQVAQKEVENRFREMEEELGY 1034
BLAST of mRNA_Ecto-sp13_S_contig588.16389.1 vs. uniprot
Match: G4YXI1_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YXI1_PHYSP) HSP 1 Score: 155 bits (391), Expect = 2.230e-39 Identity = 91/234 (38.89%), Postives = 146/234 (62.39%), Query Frame = 1
Query: 34 IARSPKLSDIFGSSWSFGQMSTVMRSNMSMVHEFELSMISMVDLKHKVARKLIKHRPCLQKENVQVVHDRALAMGDDDPLKPDYSRFLHSEKKRSFSNAVSLRHGHLENLSHWRDTVRIKAVTKIQNLFRGKLARQAAERMAKKQAFLCARAMAVEDTRQRIAAEIWKREA--ASGVGRLKWDAKVRMKQAKLRAAGENVDRQQVVEAIIEESVRAAQDGVMERFDEIAQDRGF 729
I S L ++ G W + Q+S + +MS +H++ L +I++ DLK+ +AR++ + R L + ++H+RALAMG++DPLK DYS++L + + SN V L HG NL H+R V +++ ++Q +R + RQ A A+KQAF AR +A+E+ RQ + E R+A A V ++K++AK+RMKQ KLR G R+QV+ + EE+V+AAQ V RF E+ ++ G+
Sbjct: 708 IEGSKYLCELLGHPWKYQQLSRFVVQHMSAIHQYRLGLININDLKYALARQMTQPREELSQWKKAIIHERALAMGENDPLKTDYSKYLPRRQAKLLSNVVPLDHGGYRNLLHYRMEVILRSAVRLQTTWRARKGRQIARLAAEKQAFYHARGLALEEARQTVEREWSDRDAKPAHSVDKMKFEAKIRMKQVKLRTKGNAFSREQVLSLMTEEAVQAAQKEVENRFREMEEELGY 941
BLAST of mRNA_Ecto-sp13_S_contig588.16389.1 vs. uniprot
Match: A0A225WVV9_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WVV9_9STRA) HSP 1 Score: 154 bits (389), Expect = 4.120e-39 Identity = 92/234 (39.32%), Postives = 143/234 (61.11%), Query Frame = 1
Query: 34 IARSPKLSDIFGSSWSFGQMSTVMRSNMSMVHEFELSMISMVDLKHKVARKLIKHRPCLQKENVQVVHDRALAMGDDDPLKPDYSRFLHSEKKRSFSNAVSLRHGHLENLSHWRDTVRIKAVTKIQNLFRGKLARQAAERMAKKQAFLCARAMAVEDTRQRIAAEIWKREA--ASGVGRLKWDAKVRMKQAKLRAAGENVDRQQVVEAIIEESVRAAQDGVMERFDEIAQDRGF 729
I S L ++ G W + Q+S + +M+ +H++ L +I++ DLK+ +AR+LI+ R L ++H+RALAMG++DPLK DYS++L + + S V L HG NL H+R V +++ K+Q +R K RQ A A+KQAF AR +A+ED RQ + E R+A A V ++K++ K+RMKQ KLR G R+QV+ + EE+V+A Q V RF E+ ++ G+
Sbjct: 712 IEGSKYLCELLGHPWKYQQLSRFVVQHMNAIHQYRLGLINVNDLKYALARQLIQPREELSHWKKAIIHERALAMGENDPLKTDYSKYLPKRRAKLLSKVVPLDHGGYRNLLHYRMEVILRSAVKLQTSWRAKKGRQIARLAAEKQAFYHARGLALEDARQAVEMEWRDRDAKPAHSVDKMKFEGKIRMKQVKLRTKGNAFSREQVLALMTEEAVQATQKEVENRFREMEEELGY 945
BLAST of mRNA_Ecto-sp13_S_contig588.16389.1 vs. uniprot
Match: A0A5D6YCH9_9STRA (Clu domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YCH9_9STRA) HSP 1 Score: 154 bits (389), Expect = 4.490e-39 Identity = 94/244 (38.52%), Postives = 145/244 (59.43%), Query Frame = 1
Query: 4 LQVKGWMAGIIARSPKLSDIFGSSWSFGQMSTVMRSNMSMVHEFELSMISMVDLKHKVARKLIKHRPCLQKENVQVVHDRALAMGDDDPLKPDYSRFLHSEKKRSFSNAVSLRHGHLENLSHWRDTVRIKAVTKIQNLFRGKLARQAAERMAKKQAFLCARAMAVEDTRQRIAAEIWKREA--ASGVGRLKWDAKVRMKQAKLRAAGENVDRQQVVEAIIEESVRAAQDGVMERFDEIAQDRGF 729
L+ + + + S L ++ G W + +S + +MS H+F L +I++ DLK VAR++++ R L + VVH+RALAMG++DPLK DYS++L + + SN V L HG NL H R V ++A K+Q +R + RQ A A+KQAF AR +A+E+ R + +E R+A A V ++K++AK+RMKQ KLR G R+QV + EE+V+ AQ V RF E+ ++ G+
Sbjct: 641 LEFEKYCVETVETSKYLCELLGHPWKYEHLSRFVVQHMSATHQFRLGLINLNDLKFAVARQMVQPRKELSRWKKNVVHERALAMGENDPLKTDYSKYLPKRRAKLLSNVVPLDHGGYRNLLHHRMEVILRATVKLQTTWRARKGRQVARLAAEKQAFYHARGVALEEARAAVESEWRARDARPAHSVEKMKFEAKIRMKQVKLRTKGNAFSREQVAALLTEEAVQLAQREVENRFREMEEELGY 884
BLAST of mRNA_Ecto-sp13_S_contig588.16389.1 vs. uniprot
Match: A0A329RIW9_9STRA (Clu domain-containing protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329RIW9_9STRA) HSP 1 Score: 152 bits (385), Expect = 1.540e-38 Identity = 91/234 (38.89%), Postives = 144/234 (61.54%), Query Frame = 1
Query: 34 IARSPKLSDIFGSSWSFGQMSTVMRSNMSMVHEFELSMISMVDLKHKVARKLIKHRPCLQKENVQVVHDRALAMGDDDPLKPDYSRFLHSEKKRSFSNAVSLRHGHLENLSHWRDTVRIKAVTKIQNLFRGKLARQAAERMAKKQAFLCARAMAVEDTRQRIAAEIWKREA--ASGVGRLKWDAKVRMKQAKLRAAGENVDRQQVVEAIIEESVRAAQDGVMERFDEIAQDRGF 729
I S L ++ G W + Q+S + +MS + ++ L +I++ DLK+ +AR++ + R L + ++H+RA+AMG++DPLK DYS++L + + SN V L HG NL H+R V +++ K+Q +R K RQ A A+KQAF AR +A+++ RQRI E R+A A V ++K +AK+RMKQ KLR G R+QV+ + EE+V+ AQ V RF E+ ++ G+
Sbjct: 793 IEGSKYLCELLGLPWKYQQLSRFVIQHMSPIQQYRLGLINVNDLKYTLARQMTQPREELSRWKKAIIHERAVAMGENDPLKTDYSKYLPKRRSKLLSNVVPLDHGGYRNLLHYRMEVIVRSAVKLQATWRAKKGRQVARLAAEKQAFYHARGLALDEARQRIEKEWSDRDAKPAHSVDKMKLEAKIRMKQVKLRTKGNTFSREQVLALMTEEAVQIAQKEVENRFREMEEELGY 1026 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig588.16389.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig588.16389.1 >prot_Ecto-sp13_S_contig588.16389.1 ID=prot_Ecto-sp13_S_contig588.16389.1|Name=mRNA_Ecto-sp13_S_contig588.16389.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=239bp MAGIIARSPKLSDIFGSSWSFGQMSTVMRSNMSMVHEFELSMISMVDLKHback to top mRNA from alignment at Ecto-sp13_S_contig588:1079..2131- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig588.16389.1 ID=mRNA_Ecto-sp13_S_contig588.16389.1|Name=mRNA_Ecto-sp13_S_contig588.16389.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1053bp|location=Sequence derived from alignment at Ecto-sp13_S_contig588:1079..2131- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig588:1079..2131- >mRNA_Ecto-sp13_S_contig588.16389.1 ID=mRNA_Ecto-sp13_S_contig588.16389.1|Name=mRNA_Ecto-sp13_S_contig588.16389.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=717bp|location=Sequence derived from alignment at Ecto-sp13_S_contig588:1079..2131- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |