mRNA_Ecto-sp13_S_contig5877.16384.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5877.16384.1
Unique NamemRNA_Ecto-sp13_S_contig5877.16384.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig5877.16384.1 vs. uniprot
Match: D7FH95_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH95_ECTSI)

HSP 1 Score: 66.6 bits (161), Expect = 1.000e-12
Identity = 38/48 (79.17%), Postives = 40/48 (83.33%), Query Frame = 1 
Query:    1 MRKLEAAGVGGVAAAQELTRRVLCGTGVVVGGGEEVAGKGDKIGVRPL 144
            MR LEAAGVGGVAAAQELTRRVLCGTG VVGGG  VAG G+ +G R L
Sbjct:   32 MRTLEAAGVGGVAAAQELTRRVLCGTGAVVGGGGGVAGMGE-LGARSL 78
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BLAST of mRNA_Ecto-sp13_S_contig5877.16384.1 vs. uniprot
Match: A0A6H5JP54_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP54_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 1.350e-11
Identity = 39/50 (78.00%), Postives = 43/50 (86.00%), Query Frame = 1 
Query:    1 MRKLEAAGVGGVAAAQELTRRVLCGTGVVVGGGEEVAGKGDKIGVRPLQQ 150
            MRKLEAAGVG V AAQELTRRVLCGTG VV G  EVAGKG+ +GVRPL++
Sbjct:   85 MRKLEAAGVGRVTAAQELTRRVLCGTGAVVEGVGEVAGKGE-LGVRPLRR 133
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5877.16384.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FH95_ECTSI1.000e-1279.17Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JP54_9PHAE1.350e-1178.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5877contigEcto-sp13_S_contig5877:6466..7544 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size234
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-13_004550.1
Cds size234
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463816.7371907-CDS-Ecto-sp13_S_contig5877:6465..65551681463816.7371907-CDS-Ecto-sp13_S_contig5877:6465..6555Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5877 6466..6555 -
1681463816.7492812-CDS-Ecto-sp13_S_contig5877:7400..75441681463816.7492812-CDS-Ecto-sp13_S_contig5877:7400..7544Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5877 7401..7544 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5877.16384.1prot_Ecto-sp13_S_contig5877.16384.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5877 6466..7544 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5877.16384.1

>prot_Ecto-sp13_S_contig5877.16384.1 ID=prot_Ecto-sp13_S_contig5877.16384.1|Name=mRNA_Ecto-sp13_S_contig5877.16384.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=78bp
MRKLEAAGVGGVAAAQELTRRVLCGTGVVVGGGEEVAGKGDKIGVRPLQQ
EPQGEMVSSGGSGGDTNGVVESASSSLG
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mRNA from alignment at Ecto-sp13_S_contig5877:6466..7544-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5877.16384.1 ID=mRNA_Ecto-sp13_S_contig5877.16384.1|Name=mRNA_Ecto-sp13_S_contig5877.16384.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1079bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5877:6466..7544- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGGAAGTTGGAAGCGGCGGGGGTCGGAGGGGTGGCCGCGGCGCAGGA
GCTGACCAGACGCGTGCTGTGCGGGACGGGGGTGGTGGTTGGAGGGGGGG
AGGAGGTCGCTGGGAAGGGAGACAAGATTGGAGTACGCCCTTTGGTGAGA
ACAGTTATATTGTGTTGCTGTTGTTGTTACTGATGCTTGTTGTTGTTGCT
GCTGCTGCTGCTGCGGCGGCGTCTGCTGCTGCTGATGTAGCTGGTTGGTG
TTGGTTGGTGAGTGATGTTCAGAAACAAAGATGCTACAGGGCTACCATGC
AACCGCACGCTTGCCTCACGTTTCTTGGTCTGCATGTGTATCGGCGCGAA
CAGTTGATTATTTGCAAGTCCGAACTTGCTTTCGCTTGCGGCTAACCAGT
GTGTTTGATTATACCGGCCACGTTGGACATAACTGCACACGTTTTCTGAC
CTCGCGCATGAAAGTGTCGACATCGTTGCGCTCCTTGAGAAGTTGAGAAT
CAACACCGGTCTTTGTAATCCAGCCAATCTCGTCCTTCTTAGTAGTAAAC
AGCCAATCTTGTAAGGCTTGCACAAATCGGACAGATCAGCTCCCTACAGC
TCTAGATATCTTTTTATCTGTTTCCAAGGATATGGTTCCTTGTGATGGGT
GTATGCATGTGCGCAAGGTTTACTCCATGGTGATCTGTTGGGCGTAGTTG
AGCTAGCCGACGATCTGTCCTGTGTGCATGAACAGCCTTGGCTTGTGACG
TCGCGCAACCCAGACGGAATACTCGAGCTGTGTCATACTCTCAACAGCAG
TGCCGAGTTCTCGAAGGAAAAAGGCCGGCCACACCCGTAGGCGCTGTGCG
GCCTTACCCTTGTACACCGACCACTACTGCTGTATTGTTTGCCGGCAAAG
GACACCACTTGTGCATGTTTTCCCACGTTTTTCTTCGCGTGCTTTGTGAC
GTGGCCCCTGCCATCTCTCTTGTCTTGTAAACACAACAGCAGCAGGAACC
GCAGGGTGAGATGGTGAGCAGCGGCGGCAGCGGCGGCGACACGAACGGCG
TAGTAGAAAGCGCATCTAGCTCTCTAGGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5877:6466..7544-

>mRNA_Ecto-sp13_S_contig5877.16384.1 ID=mRNA_Ecto-sp13_S_contig5877.16384.1|Name=mRNA_Ecto-sp13_S_contig5877.16384.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=234bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5877:6466..7544- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGGAAGTTGGAAGCGGCGGGGGTCGGAGGGGTGGCCGCGGCGCAGGA
GCTGACCAGACGCGTGCTGTGCGGGACGGGGGTGGTGGTTGGAGGGGGGG
AGGAGGTCGCTGGGAAGGGAGACAAGATTGGAGTACGCCCTTTGCAGCAG
GAACCGCAGGGTGAGATGGTGAGCAGCGGCGGCAGCGGCGGCGACACGAA
CGGCGTAGTAGAAAGCGCATCTAGCTCTCTAGGA
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