mRNA_Ecto-sp13_S_contig5875.16381.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5875.16381.1
Unique NamemRNA_Ecto-sp13_S_contig5875.16381.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig5875.16381.1 vs. uniprot
Match: D7G415_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G415_ECTSI)

HSP 1 Score: 334 bits (857), Expect = 6.350e-112
Identity = 232/267 (86.89%), Postives = 239/267 (89.51%), Query Frame = 1 
Query:    1 WQLRKAEAIEKTSERDIEDYSNQRDQIEESIKGVQEEIGALKEGLVVERKKRHNKEVYEETCKDINKYPPHRATKARFTAKRPPSFGYTSAAVFLVLQLAIEKLEQELVLLNERRKAVQAVQKLKHKQIALLLQSLADIQATVEEGEVEEEPTVGALELIGLDEELVVDGTAEEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPSAESDEVERVAVGANGDVAPVMPGVLGGRSSRKGMHSSTSSKQRNQKAIPVSSEIDP 801
            ++LRKAEAIEKTSERDIEDYSNQRDQIEESIKGVQEEIGALKEGLVVERKKRHNKEVYEETCKDINKYPPHRATK                       LAIEKLEQELVLL+ERRKAVQAVQKLKHKQIALLLQSL DIQATVEEGEVEEEPTVGALELIGLDEELVVDGTAEEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPSAESDEVERVAVGANG+ APVMPGVLGG  SRKG+HSST SK+RN+KAIPVSSEIDP
Sbjct:   76 FELRKAEAIEKTSERDIEDYSNQRDQIEESIKGVQEEIGALKEGLVVERKKRHNKEVYEETCKDINKYPPHRATK-----------------------LAIEKLEQELVLLHERRKAVQAVQKLKHKQIALLLQSLTDIQATVEEGEVEEEPTVGALELIGLDEELVVDGTAEEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPSAESDEVERVAVGANGEPAPVMPGVLGGLGSRKGVHSSTLSKRRNRKAIPVSSEIDP 319
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5875.16381.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G415_ECTSI6.350e-11286.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5875contigEcto-sp13_S_contig5875:81..4227 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size813
Hectar predicted targeting categoryother localisation
Exons6
Ec32 ortholog descriptionTHO complex subunit 7/Mft1
Ec32 orthologEc-19_000470.1
Cds size813
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5875.16381.1prot_Ecto-sp13_S_contig5875.16381.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5875 81..4227 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463816.5726008-CDS-Ecto-sp13_S_contig5875:80..1641681463816.5726008-CDS-Ecto-sp13_S_contig5875:80..164Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5875 81..164 +
1681463816.5838358-CDS-Ecto-sp13_S_contig5875:643..8121681463816.5838358-CDS-Ecto-sp13_S_contig5875:643..812Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5875 644..812 +
1681463816.594327-CDS-Ecto-sp13_S_contig5875:1043..12251681463816.594327-CDS-Ecto-sp13_S_contig5875:1043..1225Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5875 1044..1225 +
1681463816.605463-CDS-Ecto-sp13_S_contig5875:2471..26211681463816.605463-CDS-Ecto-sp13_S_contig5875:2471..2621Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5875 2472..2621 +
1681463816.6164246-CDS-Ecto-sp13_S_contig5875:3789..38801681463816.6164246-CDS-Ecto-sp13_S_contig5875:3789..3880Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5875 3790..3880 +
1681463816.627483-CDS-Ecto-sp13_S_contig5875:4090..42271681463816.627483-CDS-Ecto-sp13_S_contig5875:4090..4227Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5875 4091..4227 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5875.16381.1

>prot_Ecto-sp13_S_contig5875.16381.1 ID=prot_Ecto-sp13_S_contig5875.16381.1|Name=mRNA_Ecto-sp13_S_contig5875.16381.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=271bp
WQLRKAEAIEKTSERDIEDYSNQRDQIEESIKGVQEEIGALKEGLVVERK
KRHNKEVYEETCKDINKYPPHRATKARFTAKRPPSFGYTSAAVFLVLQLA
IEKLEQELVLLNERRKAVQAVQKLKHKQIALLLQSLADIQATVEEGEVEE
EPTVGALELIGLDEELVVDGTAEEGDGDNGDGEEGDDDGNDEDGEGEEEG
ERRRGRKRSPSAESDEVERVAVGANGDVAPVMPGVLGGRSSRKGMHSSTS
SKQRNQKAIPVSSEIDPTAS*
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mRNA from alignment at Ecto-sp13_S_contig5875:81..4227+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5875.16381.1 ID=mRNA_Ecto-sp13_S_contig5875.16381.1|Name=mRNA_Ecto-sp13_S_contig5875.16381.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4147bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5875:81..4227+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGGCAGCTTCGGAAAGCGGAGGCCATTGAGAAAACGAGCGAGCGGGACAT
CGAGGACTACAGCAACCAGCGGGACCAGATCGAGGTACGGAATCCAGCTC
CACTAGTCTCGCCCAAGAGGCGAACGCAACTTGCTGATGAGGAGACATCT
CTGCACATTCCCCCCAATGGACCACTTTCCGAAACATGCCGCCATCATTT
GTTTGGATCGAATTTCCATGGGTAGCAGTAGTGATTTTGTGCGGAAGGTG
CGTCTTGTTTTGCTACCCGAAGGATACCAAGAGCGTGCAGACAGCGAAGT
GACGAAAGTGGTGATATTTCTTTCTTACGTGTCTCATTGGTGACCACATA
TGGTGAGAGGTGAACCCACCCCCCCTTGGTGGCATGCCTCAACCTGATCA
TGTAGTTACCGAATCTTCGGGTACGTGAAGTAACACACAATACCATCACC
AACAAAATGTTTTAGCAGCACCACGTTGCTATGTTCCGCATCATTCGGGG
GAGGAGCAAGCAGCGTTAAAATTGTCCCGTGTTGTTCGTAATAACTTCTT
GCACGTCCTACAGGAGAGCATCAAGGGCGTGCAGGAGGAGATCGGAGCAC
TGAAGGAGGGCCTGGTGGTAGAGCGTAAGAAGAGGCACAACAAGGAGGTG
TACGAGGAGACGTGCAAGGACATCAACAAGTACCCTCCGCACAGGGCAAC
GAAGGCAAGATTTACCGCTAAGCGACCGCCTTGTCGGTGTCGGGAATCGA
CTTGTGCCTTGTTGTACCCCATTTATCCCTCACGTTGCCGCTACATGTAC
AACAAAAGCTGATGCTGATGCATCCGTACACTGTTTTTACTGAAAAAGGC
AGTGCTGTACAATCAATGCGTTGGTTGCTGTACTTTCACGAGAAGAGGCG
GGTCGGCGCAAACATGTCGATCAAGAACTGCCTCCCTTTCTGCCCACCGT
ATCAAACAACGAGCGTTTGGGTACACGTCCGCTGCCGTTTTTCTGGTGCT
TCAGCTGGCGATCGAGAAGCTCGAGCAGGAGCTCGTGTTGCTGAACGAGA
GGCGAAAGGCGGTGCAGGCGGTGCAGAAACTGAAGCACAAGCAGATTGCG
CTCCTCCTGCAGTCGCTGGCCGACATTCAGGCCACGGTCGAAGAGGTGCG
AACGAAAATTACACCGGCTGCTGTCGTTGTCGTTGCTTGTTTTGTCGTTG
TTGTTGGTGTTGTCGTCGTTTGTCGTTTGTCGTTTGTGAGTTGCTGCGAT
GGCCTCTTGATGTTGTTCACTTGCGCCCGTGACAAGACTGTAGCCTACGG
TCAACTGAAGGCACAAGAATGGCCAACCGACGGCAGCTGTTGAGGACCAC
TAACTGGTCTAACCCGACAAGAGGAGTCCAGTAACAGCCCAGTATGGTGC
CCGTGACATCCACAAGCCACCGTCAACGAGTTGCGCACGCATGATACCTC
ACCGTGTGTGCGGTGCCACACACCGCGTGTACGAAATTATATCCTGTACC
TATTGATGTCCCGCTCAATTTGAGGCAGCAGATACTGCGCTCTCCGGCAT
CAGACGTCACACCTTCCCGTACGATATCCTAAAGTACAGTGCCGGCATTT
TTGAGGCCAATACGGGTGCCTGGATAAGAAGAGTAACCACCCCAACGAAT
TGAGGGGAACCAATATAATCGTGAGAAACATCTTCCCGTACGATATCCTA
AACTACATTGCCGGCATTGTTGAGGCCAATACGGGTGCCTGGATAAGAAG
AGTAACCTTCCCCCAACGATTTACGGGGAACCAATATAATCGTGAGAAAG
CTCTCGTCAGCAATGTTCGAATGAGCCCATTGGTAGCACCCGATTCGTGC
TGTAAGGAAAGTTATGGCGCAAATCCCATGACGGGAGAAGGCACTTCGCC
TCACAAGAATCGCCGTATCTCAACAACTACGACGATTCGGGCGGAAACAA
ACGCAGTTTCGGAAAGTTATCTTTCAAAATTATAATTCACGAACGCGTCG
GGGAAATTCTAAAGACAAATTGATTTAATCAGTGGTACACAAGGTCTCTG
GTCCGAAACCATCGTCCTGTCTTTATCGTCTTTTTCCCCTTGTTTTATGT
ATTTTTTGAAGTATTTTTCCCATATGTTTATCCTGAAAAATGTATGCAAT
TTTCTTCGATTTCCCGCAAATGTCGTCACCTGGTCTTGTCGGTGCCATCA
CAGGCAGGACGTACGTGAAAAACATTCGAAATCCATGACTGTAGCTAAGT
GTCATGACCGGTCAACTATTATGGGTCTTGCAAATCCGGGCACTGTAACC
ATCATACCGCACCACATCGCACGGTGCCATGCCATGCCACGCCATGTCCT
GCCGTATATCATACGATGCGACATCAATCATTCCCCAATAGGGCGAGGTG
GAGGAGGAACCGACGGTGGGTGCCCTGGAGCTAATTGGCCTGGACGAGGA
GTTGGTAGTGGATGGCACCGCAGAAGAAGGGGACGGAGACAATGGAGACG
GGGAAGAGGGCGATGATGACGGCAACGACGAAGACGGAGAGGTGGGGTGT
CTTTGTTCCCTCTTGCACGCCGGCAGGAATGCTCACAACAAGAATCTTCG
GTCGCTCCGCAAGAAACGTTGTTGTAGCGGTGGCGATGCGCATGTCTTCG
TAGCAGTTTGAACGAAAATTCTCAGGATGCGGAGAGGGTGAAACGGGGAG
CGGGAAGGGCTCGCGGGTGTGGAAAATCTTGTGCACTTTTTGCCGGGTCT
ACGGAGGTCGTGTGATTTTGAGTGCTCCAACACTCTGGTCTCCACGAGTA
TGCCTGTTTCGTTGTCAGACATGTGTGTTCGTGGCCGACATATTGACTTT
CTCTGTAGCCTAGATAGGTGTGAAACTGTCTAAGTTTACAACGCATCTAG
GCTCTTGAACGTATTGCCGACGTGTGCGTCGATACTGCACACAAATTTTT
CCGTTGCTCTCTACTACACACTACTGTGGTGGGCATAGTTTGTGCCTAGT
TATTCCGAGGCAACCAGGAAGGCAAGAGAGCATCAAATTACTGAGAATAT
TAATCACTAGCAGAACTACAGCGATAATGCCGGACGACGGTTGTTTTTTA
TGGCGGTGCCGGCTTCCCTCGGAGGATCGTCCACCATTGGTCGGCGAGTG
TACAGCACACGATCTGCAACCATGCTGTCATTATTTGCCTATAATTTCCG
AGGCTCTGATTGATGTTGGTATTCTTTGGGGTTCATCCCCTCTCGGAATA
TCCACCTCTTATTGTGACACCTTGTATCCCTTGTGACGATGTCCGACGCT
TGACCATCTGGAAGTGTTACGCCTGGGTAGTCGGCACACATTCAGCTTGT
TATCGAATAGAAACCCCAGTGGACTTCGCACATCGCGAAATATTTCCAAC
AACCCGAAACAACACGACGTTCTGGGTGCACCGGGATTCAGTTGCTTCTC
AATCAACAAGGGAACGTACGACAAATGGAAAATGGAACCAGCGGTACACA
GCAACACGCCGTTCTGGGTTCACCGGGATTCTGTTGCTTCTCAATCAACA
AGTCAAGACGTACGATAAATGATAAATGGAAACAGCGTACACAGTACAAC
ATTTGGATGATCAAGGAACAGTGGAAATTGAACAACACAATTATCCATAT
TTTCGTAGTTGTTGGAAACACTGCAGACTGACGTACTGCGTCTTTTTTTT
CTTGGCCAGGGGGAGGAAGAGGGGGAGCGGCGACGTGGTCGAAAACGCTC
TCCGTCGGCCGAGAGCGACGAAGTCGAACGGGTCGCCGTCGGAGCAAATG
GTGAGGTACCGCCCGGCGGCGGACCGCCCGGAGAAGACGAAGAGATGCCG
GACGCAGGCGCCGCCTAATTCGTTGTCCGGCGTACTGGAGTGTCAGAGTT
ATGTGTTTAGTGTACGCCAGCCTTGTTGTCTCTCTCTGAATTGGTTTCGA
GGGTCAGCAGTCCCAACAAAAATGTGTTCTCCTGCCTCATTGAGGCGATA
CTTGCGGAAGGGGACGTGGCACCTGTGATGCCGGGTGTGTTGGGAGGGCG
GAGCAGCCGCAAAGGGATGCATTCGTCGACGTCGTCTAAGCAGCGGAATC
AGAAAGCGATTCCTGTTTCATCGGAAATCGATCCAACTGCTTCATAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5875:81..4227+

>mRNA_Ecto-sp13_S_contig5875.16381.1 ID=mRNA_Ecto-sp13_S_contig5875.16381.1|Name=mRNA_Ecto-sp13_S_contig5875.16381.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=813bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5875:81..4227+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGGCAGCTTCGGAAAGCGGAGGCCATTGAGAAAACGAGCGAGCGGGACAT
CGAGGACTACAGCAACCAGCGGGACCAGATCGAGGAGAGCATCAAGGGCG
TGCAGGAGGAGATCGGAGCACTGAAGGAGGGCCTGGTGGTAGAGCGTAAG
AAGAGGCACAACAAGGAGGTGTACGAGGAGACGTGCAAGGACATCAACAA
GTACCCTCCGCACAGGGCAACGAAGGCAAGATTTACCGCTAAGCGACCGC
CTTCGTTTGGGTACACGTCCGCTGCCGTTTTTCTGGTGCTTCAGCTGGCG
ATCGAGAAGCTCGAGCAGGAGCTCGTGTTGCTGAACGAGAGGCGAAAGGC
GGTGCAGGCGGTGCAGAAACTGAAGCACAAGCAGATTGCGCTCCTCCTGC
AGTCGCTGGCCGACATTCAGGCCACGGTCGAAGAGGGCGAGGTGGAGGAG
GAACCGACGGTGGGTGCCCTGGAGCTAATTGGCCTGGACGAGGAGTTGGT
AGTGGATGGCACCGCAGAAGAAGGGGACGGAGACAATGGAGACGGGGAAG
AGGGCGATGATGACGGCAACGACGAAGACGGAGAGGGGGAGGAAGAGGGG
GAGCGGCGACGTGGTCGAAAACGCTCTCCGTCGGCCGAGAGCGACGAAGT
CGAACGGGTCGCCGTCGGAGCAAATGGGGACGTGGCACCTGTGATGCCGG
GTGTGTTGGGAGGGCGGAGCAGCCGCAAAGGGATGCATTCGTCGACGTCG
TCTAAGCAGCGGAATCAGAAAGCGATTCCTGTTTCATCGGAAATCGATCC
AACTGCTTCATAG
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