mRNA_Ecto-sp13_S_contig587.16370.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig587.16370.1
Unique NamemRNA_Ecto-sp13_S_contig587.16370.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig587.16370.1 vs. uniprot
Match: A0A6H5JTA2_9PHAE (Thioredoxin domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JTA2_9PHAE)

HSP 1 Score: 331 bits (849), Expect = 3.260e-113
Identity = 167/178 (93.82%), Postives = 170/178 (95.51%), Query Frame = 1 
Query:    1 MKVVGRKSMRCAMAVLGLLVLSIGLISPNGSFVTAEAADGAAAAAAEIPPEPKMDADEDGMGGAEGEEEPTIPGATVQVLTDGDFERITQASTGATTGDWFVEFYAPWCGHCRKLDGTWTELAEKLGGEVNVGKVDATANRGLVKRFGIKGFPTLLFFSHGNLHKFAGPRKIDSFIEF 534
            MKVVGRK MRC +A LGLLVLSIGLISP GSFVTA   DGAAAAAAEIP EPKMDADEDGMGGAEGEEEPTIPGATVQVLTDGDFERITQASTGATTGDWFVEFYAPWCGHCRKLDGTWTELAEKLGGEVNVGKVDATANRGLVKRFG+KGFPTLLFFSHGNLHKFAGPRK+DSFIEF
Sbjct:    7 MKVVGRKIMRCVIAALGLLVLSIGLISPKGSFVTAGVVDGAAAAAAEIPQEPKMDADEDGMGGAEGEEEPTIPGATVQVLTDGDFERITQASTGATTGDWFVEFYAPWCGHCRKLDGTWTELAEKLGGEVNVGKVDATANRGLVKRFGVKGFPTLLFFSHGNLHKFAGPRKLDSFIEF 184
[Close]
BLAST of mRNA_Ecto-sp13_S_contig587.16370.1 vs. uniprot
Match: A0A7S2V1W0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1W0_9STRA)

HSP 1 Score: 138 bits (347), Expect = 1.280e-37
Identity = 62/102 (60.78%), Postives = 75/102 (73.53%), Query Frame = 1 
Query:  229 VQVLTDGDFERITQASTGATTGDWFVEFYAPWCGHCRKLDGTWTELAEKLGGEVNVGKVDATANRGLVKRFGIKGFPTLLFFSHGNLHKFAGPRKIDSFIEF 534
            V VL +  FE +TQASTGATTGDWFVEFYAPWCGHC++L   W E+A +L G VNV KVD T NR L+KRFG+ GFPTL FF HG ++ + G R  ++  EF
Sbjct:   40 VIVLDNDSFEHLTQASTGATTGDWFVEFYAPWCGHCKRLTPVWEEIATELKGTVNVAKVDGTQNRKLLKRFGVSGFPTLKFFHHGKMYSYKGARTAEALTEF 141
[Close]
BLAST of mRNA_Ecto-sp13_S_contig587.16370.1 vs. uniprot
Match: U6LL83_9EIME (Thioredoxin, putative n=1 Tax=Eimeria brunetti TaxID=51314 RepID=U6LL83_9EIME)

HSP 1 Score: 137 bits (346), Expect = 2.710e-37
Identity = 61/104 (58.65%), Postives = 77/104 (74.04%), Query Frame = 1 
Query:  223 ATVQVLTDGDFERITQASTGATTGDWFVEFYAPWCGHCRKLDGTWTELAEKLGGEVNVGKVDATANRGLVKRFGIKGFPTLLFFSHGNLHKFAGPRKIDSFIEF 534
            + VQVLTD +FE+ TQA TG+T+GDWFV+FYAPWCGHCRK+   W ELA KL G +NV  +DATAN    +RFGI+GFPTLLFF +G ++ + G R +D    F
Sbjct:   53 SAVQVLTDANFEQETQAVTGSTSGDWFVKFYAPWCGHCRKMAPAWEELARKLKGRINVAHLDATANPQTARRFGIRGFPTLLFFKNGQMYSYQGSRAVDDLYAF 156
[Close]
BLAST of mRNA_Ecto-sp13_S_contig587.16370.1 vs. uniprot
Match: A0A3M6VFL7_9STRA (Thioredoxin domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VFL7_9STRA)

HSP 1 Score: 135 bits (340), Expect = 7.900e-37
Identity = 63/107 (58.88%), Postives = 78/107 (72.90%), Query Frame = 1 
Query:  214 IPGATVQVLTDGDFERITQASTGATTGDWFVEFYAPWCGHCRKLDGTWTELAEKLGGEVNVGKVDATANRGLVKRFGIKGFPTLLFFSHGNLHKFAGPRKIDSFIEF 534
            I  + V VLT  DFE  TQA +GATTGDW VEFYAPWCGHC+KL   + ++A++L G+VNV KVD T N  L KRFGI+GFPT+L FSHG  +KF G R ++ F+ F
Sbjct:   19 ISASNVIVLTSADFEAKTQAGSGATTGDWLVEFYAPWCGHCKKLAPIYEQVADELKGQVNVAKVDVTDNAELGKRFGIRGFPTVLLFSHGKSYKFGGKRTLEEFLVF 125
[Close]
BLAST of mRNA_Ecto-sp13_S_contig587.16370.1 vs. uniprot
Match: A0A812WAE0_SYMMI (Hypothetical protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812WAE0_SYMMI)

HSP 1 Score: 135 bits (340), Expect = 1.160e-36
Identity = 63/113 (55.75%), Postives = 78/113 (69.03%), Query Frame = 1 
Query:  196 GEEEPTIPGATVQVLTDGDFERITQASTGATTGDWFVEFYAPWCGHCRKLDGTWTELAEKLGGEVNVGKVDATANRGLVKRFGIKGFPTLLFFSHGNLHKFAGPRKIDSFIEF 534
            G+EE +   + V VLT  +FE  TQASTG+TTGDW VEFYAPWCGHC++L   W ELA +L G  NVGKVD T NR L  RF IKGFPT+ FF  G  + + G R +++F+ F
Sbjct:   17 GDEETSSKASNVVVLTSANFEMETQASTGSTTGDWIVEFYAPWCGHCKRLQPVWEELATELKGIANVGKVDVTGNRDLGNRFDIKGFPTIKFFRQGQTYDYKGGRSLEAFVNF 129
[Close]
BLAST of mRNA_Ecto-sp13_S_contig587.16370.1 vs. uniprot
Match: A0A0N7L624_PLAHL (Protein disulfide-isomerase domain n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L624_PLAHL)

HSP 1 Score: 134 bits (337), Expect = 2.110e-36
Identity = 60/107 (56.07%), Postives = 78/107 (72.90%), Query Frame = 1 
Query:  214 IPGATVQVLTDGDFERITQASTGATTGDWFVEFYAPWCGHCRKLDGTWTELAEKLGGEVNVGKVDATANRGLVKRFGIKGFPTLLFFSHGNLHKFAGPRKIDSFIEF 534
            +  + + VLT+ DFE  TQA +GATTGDW +EFYAPWCGHC+KL   + ++A++L GEVNV KVD T N  L KRFGI+GFPT+L  SHG  +KF GPR ++  + F
Sbjct:   17 VTSSNIIVLTNADFEHKTQAGSGATTGDWLIEFYAPWCGHCKKLAPIFEKVADELKGEVNVAKVDVTDNAELGKRFGIRGFPTILHLSHGKSYKFTGPRTLNDLVAF 123
[Close]
BLAST of mRNA_Ecto-sp13_S_contig587.16370.1 vs. uniprot
Match: A0A484EI82_BRELC (Thioredoxin domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EI82_BRELC)

HSP 1 Score: 134 bits (337), Expect = 2.300e-36
Identity = 62/108 (57.41%), Postives = 78/108 (72.22%), Query Frame = 1 
Query:  211 TIPGATVQVLTDGDFERITQASTGATTGDWFVEFYAPWCGHCRKLDGTWTELAEKLGGEVNVGKVDATANRGLVKRFGIKGFPTLLFFSHGNLHKFAGPRKIDSFIEF 534
            ++  + V VLTD DFE  TQA +GATTGDW VEFYAPWCGHC+KL   +  +A++L GE+NV KVD T N  L KRF I+GFPT+L FSHG ++K+AG R  D  + F
Sbjct:   20 SVATSNVIVLTDSDFEHKTQAGSGATTGDWLVEFYAPWCGHCKKLTPIYETVAQELQGELNVAKVDVTENAELGKRFNIRGFPTILHFSHGKVYKYAGKRTKDDLVAF 127
[Close]
BLAST of mRNA_Ecto-sp13_S_contig587.16370.1 vs. uniprot
Match: U6JVK8_9EIME (Thioredoxin, putative n=1 Tax=Eimeria mitis TaxID=44415 RepID=U6JVK8_9EIME)

HSP 1 Score: 135 bits (340), Expect = 2.380e-36
Identity = 59/102 (57.84%), Postives = 77/102 (75.49%), Query Frame = 1 
Query:  229 VQVLTDGDFERITQASTGATTGDWFVEFYAPWCGHCRKLDGTWTELAEKLGGEVNVGKVDATANRGLVKRFGIKGFPTLLFFSHGNLHKFAGPRKIDSFIEF 534
            VQVLTD +FE+ TQA TG+TTGDWFV+FYAPWCGHCRK+   W ELA+KL G++NV  +DAT N    +RF I+GFPTLL+F +G ++++ G R +D    F
Sbjct:   59 VQVLTDANFEQETQAVTGSTTGDWFVKFYAPWCGHCRKMAPAWEELAKKLKGQINVAHLDATTNPQTARRFSIRGFPTLLYFKNGQMYQYKGSRTVDDLYAF 160
[Close]
BLAST of mRNA_Ecto-sp13_S_contig587.16370.1 vs. uniprot
Match: H3G8D9_PHYRM (Thioredoxin domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G8D9_PHYRM)

HSP 1 Score: 133 bits (334), Expect = 6.150e-36
Identity = 63/104 (60.58%), Postives = 75/104 (72.12%), Query Frame = 1 
Query:  223 ATVQVLTDGDFERITQASTGATTGDWFVEFYAPWCGHCRKLDGTWTELAEKLGGEVNVGKVDATANRGLVKRFGIKGFPTLLFFSHGNLHKFAGPRKIDSFIEF 534
            + V VL+  DFE  TQA +GATTGDW VEFYAPWCGHC+KL+  +  +A  L GEVNV KVD TAN  L KRFGI+GFPT+L FSHG  +KFAG R ++    F
Sbjct:   21 SNVVVLSTSDFEHKTQAGSGATTGDWLVEFYAPWCGHCKKLEPIYETVANDLKGEVNVAKVDVTANSELGKRFGIRGFPTVLHFSHGKSYKFAGKRTLEELSAF 124
[Close]
BLAST of mRNA_Ecto-sp13_S_contig587.16370.1 vs. uniprot
Match: D0MU36_PHYIT (Protein disulfide-isomerase, putative n=13 Tax=Phytophthora TaxID=4783 RepID=D0MU36_PHYIT)

HSP 1 Score: 133 bits (334), Expect = 7.460e-36
Identity = 62/104 (59.62%), Postives = 78/104 (75.00%), Query Frame = 1 
Query:  223 ATVQVLTDGDFERITQASTGATTGDWFVEFYAPWCGHCRKLDGTWTELAEKLGGEVNVGKVDATANRGLVKRFGIKGFPTLLFFSHGNLHKFAGPRKIDSFIEF 534
            + V VL++ DFE  TQA +GATTGDW VEFYAPWCGHC+KL   + ++A +L G+VNV KVD TAN  L KRFGI+GFPTLL FSHG  +K++G R ++   EF
Sbjct:   28 SNVIVLSNDDFEHKTQAGSGATTGDWLVEFYAPWCGHCKKLVPIYEKVASELKGQVNVAKVDVTANAELGKRFGIRGFPTLLHFSHGKSYKYSGKRTLEDLAEF 131
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig587.16370.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JTA2_9PHAE3.260e-11393.82Thioredoxin domain-containing protein n=2 Tax=Ecto... [more]
A0A7S2V1W0_9STRA1.280e-3760.78Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
U6LL83_9EIME2.710e-3758.65Thioredoxin, putative n=1 Tax=Eimeria brunetti Tax... [more]
A0A3M6VFL7_9STRA7.900e-3758.88Thioredoxin domain-containing protein n=1 Tax=Pero... [more]
A0A812WAE0_SYMMI1.160e-3655.75Hypothetical protein n=1 Tax=Symbiodinium microadr... [more]
A0A0N7L624_PLAHL2.110e-3656.07Protein disulfide-isomerase domain n=1 Tax=Plasmop... [more]
A0A484EI82_BRELC2.300e-3657.41Thioredoxin domain-containing protein n=1 Tax=Brem... [more]
U6JVK8_9EIME2.380e-3657.84Thioredoxin, putative n=1 Tax=Eimeria mitis TaxID=... [more]
H3G8D9_PHYRM6.150e-3660.58Thioredoxin domain-containing protein n=1 Tax=Phyt... [more]
D0MU36_PHYIT7.460e-3659.62Protein disulfide-isomerase, putative n=13 Tax=Phy... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig587contigEcto-sp13_S_contig587:35..4775 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score337.0
Seed ortholog evalue5.2e-90
Seed eggNOG ortholog2880.D8LB12
Model size534
KEGG koko:K13984
KEGG Pathwayko04141,map04141
Hectar predicted targeting categorysignal peptide
Exons6
EggNOG free text desc.cell redox homeostasis
EggNOG OGsCOG0526@1,KOG0191@2759
Ec32 ortholog descriptionThioredoxin-like fold
Ec32 orthologEc-27_005660.1
Cds size534
COG Functional cat.CO
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03110,ko04131
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig587.16370.1prot_Ecto-sp13_S_contig587.16370.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig587 35..4775 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463815.6244817-CDS-Ecto-sp13_S_contig587:34..1181681463815.6244817-CDS-Ecto-sp13_S_contig587:34..118Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig587 35..118 -
1681463815.6364713-CDS-Ecto-sp13_S_contig587:1020..10891681463815.6364713-CDS-Ecto-sp13_S_contig587:1020..1089Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig587 1021..1089 -
1681463815.647948-CDS-Ecto-sp13_S_contig587:1747..18001681463815.647948-CDS-Ecto-sp13_S_contig587:1747..1800Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig587 1748..1800 -
1681463815.6591163-CDS-Ecto-sp13_S_contig587:2208..22291681463815.6591163-CDS-Ecto-sp13_S_contig587:2208..2229Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig587 2209..2229 -
1681463815.6711407-CDS-Ecto-sp13_S_contig587:2723..29431681463815.6711407-CDS-Ecto-sp13_S_contig587:2723..2943Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig587 2724..2943 -
1681463815.6837263-CDS-Ecto-sp13_S_contig587:4688..47751681463815.6837263-CDS-Ecto-sp13_S_contig587:4688..4775Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig587 4689..4775 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig587.16370.1

>prot_Ecto-sp13_S_contig587.16370.1 ID=prot_Ecto-sp13_S_contig587.16370.1|Name=mRNA_Ecto-sp13_S_contig587.16370.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=178bp
MKVVGRKSMRCAMAVLGLLVLSIGLISPNGSFVTAEAADGAAAAAAEIPP
EPKMDADEDGMGGAEGEEEPTIPGATVQVLTDGDFERITQASTGATTGDW
FVEFYAPWCGHCRKLDGTWTELAEKLGGEVNVGKVDATANRGLVKRFGIK
GFPTLLFFSHGNLHKFAGPRKIDSFIEF
back to top

mRNA from alignment at Ecto-sp13_S_contig587:35..4775-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig587.16370.1 ID=mRNA_Ecto-sp13_S_contig587.16370.1|Name=mRNA_Ecto-sp13_S_contig587.16370.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4741bp|location=Sequence derived from alignment at Ecto-sp13_S_contig587:35..4775- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGGTCGTCGGCAGGAAGAGTATGCGCTGTGCAATGGCCGTGTTGGG
GCTGCTGGTGCTCTCGATAGGTCTCATCTCGCCGAACGTGAGGTGACTGG
AATTTTGGTCTGCGGCTTTGCACCCTTCACACACACATAGTCTCAACAGA
GAGCCGTTTTCCTTCGTTGTGGTTATGCTGCCGTTTGTTTCGTTCTGCAA
GCATAGTAGCCGCCAGCCATTGCTCGAAAGCTGGAGTTGGATAGCTGTTG
CTACAGCAGTGGTTATAGTGGCATGCCACTCGGGCGATGCTTGCTTCATG
ATACGAGGTTGTTAGTTGCGCGCGTAAATAATCCGCTTTGAAGACTACGC
TGCGCGTCTGTTGCTCATTGGTCAACGAAGTTTGGAGAGAACCTCAACTT
GCAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNAAAGTGTCGTCTTCGCTCCGAGACCAAAAGCCTGACCT
TCAAGCGGGTAGAAATACGCTTGTTCGCTACGATTCAGTCGATGCAGAGT
TGCTTGAGTCACACCAGACTATCGTGCTTACTGGGTACCCTCGAGTGTTT
GTTTCTTTGGTACATGCCATACTTCATACTCCGTACAAGCTTTCCCGGCC
GATGTCAGTTACCGGCATCCGGCACAGGGTGATCTTTTCAATTTCCCGGG
GGGGTGATGACAAGAGTTTCATGTACACGTGTTTGGATTCCTTTGCCTTT
AGTTGAAAAGGCGTTGGGTGTGCACGTCGTAATCAGACACAGAAGTTTCC
AGGCAAGGAACTAAACCAAAATACCGTTGCCGCAACAATTTGAGCCCTGG
CGTGTGCCGGCAGCTGCGGTCGACCTGCCTCAGGATCTCTGCTCTTGGTC
TCTTGTGCCGTTTTTTGGAGGATGCATGTGTGTTTGACTGCTCAAGTTCG
ACTGCTGCTGCTGCCGGCATACTGTGCTTTCTTCGTGTTTCGCGTGGTTT
AAGCCAAACTCTTGGACTGAAAGAAGCATTTTATGGAATTTTTTGTGTTA
ACGCAATGCAATCGCCAGAGTTCAAAAGCAGAAATCGCGATGCAATCGAA
AACATCATCTCGAAGATCGAGGCCAACATGGCAGGCGACAGCAAGTCAGG
AAGATACCGATAGATGCTCCTTCGCTCTTCTTCCCTTATTATGCAGCCTC
GATTTTCGTGCTTCCCGGCAATCCACCTACTTCTAAGTATTCCGATGCTC
GGGCTCTGACCTCTTCAGCATGGAACATGTGTCCACCCTCTGTGTTCTGC
CGTCCTGACGGGCAGATAACTTGGCTTTTGGTATCACTTCAGAAATCTCA
TGAGTTTTGCTTTAACCGTCGCTCCTTACATGATCAGTGGGGAAACAAAC
AGGAATTTGACGCTCCCTCCTCTAACCCCCCATCACAACATTGGGGACGT
CTTTTGACCCGATCACCCGGCCGCCAATCAAGGGTTCCTTCGTGACTGCC
GAGGCAGCAGATGGCGCCGCCGCCGCCGCCGCCGAGATCCCCCCAGAGCC
AAAGATGGACGCCGACGAGGACGGGATGGGGGGCGCGGAGGGAGAAGAGG
AGCCGACCATCCCGGGGGCGACTGTCCAGGTGCTGACGGACGGCGACTTC
GAGAGGATTACGCAGGCGTCGACGGGGGCCACGACCGGCGACTGGTTCGT
CGGTGAGAGAGATAGGAGCGGCAGCAAAGCGAGCTCGAGTTTGAGTTGCT
CGTCCGCTATCACGGGCTGATGGGATGGGTTTTTGTTTGTCTTGCTGCAT
GCAGGGCTTCGTTCTGCTGTGTTGAATGACATGTCCGCTTTCCATGGCGC
ATGCAGCCAAGGGTTCCGGCCGTGGAGTAGTTGTCGCGCCCGGCGACACT
GCGGTCTCCCCCTCCCATACTGATATTCGTTTTTGGTGGTGTAGAAATTT
TAGCCCGTGTGCCTGCTGCTATGAATCTCAAAAATGTTGCAATGTCCTCC
TGTTCGTCCGGTGGGATGCGGTGTATATGGCCTGTGCGCTTGGACGGCGG
CTTGCGATGCCTCCGCCGCTGATTTCTGCCACGCTCGTGCTCGGGGTGGC
GTTGATGGTGGTCGGACTACCGCTCCTTCTGCTACCGCTGTTGCTGCTGC
TGCTGCTGCTGCTACTGCGTGTGCTGCTGATGCCGTGGATGTGCAGAATT
TTACGCGCCGTGGTGTGGTGAGAGAAGTGTTCCTTGTCTCGTGGCCATTA
TTGCCGTTTGAGTTACGGGGTATATTGCCACCAGTACCCGTGGTGTGCCT
CCATTCCCCCATGAGCCTTTCTTCCGCGGTTTCGAAACTTGGTCTGTCAC
ATCTAAGCCTCGTATGAATACAAAGAATTACAACCAACACAGGGTCCTGT
ACACGCGCGGCTTACACATGCCAGACACTGAGATGAGAACGTCGCGACTC
AAAACCCCATAGGCTGCGGAAGTATTTTTGATGTCGATGAAGAACGCCGT
CTACTGCTCGAATGTCTCCCGCTCGTTCGGCTCTGACTATTTTTTACCCC
TACTTGCATCTTTTGACTGCGCTTGTTTTTGCCGTGTCTACCGCCGACTC
GACCGCCACTGTTGCTTCCCCGTAGGACACTGCCGAAAGCTGGATGGCAC
GTGGACAGAGCTTGCGGAGAAGCTTGGGGTGAGTTCGTGCCAGCAGCACT
CTTGGTTCTTGCCCGCGAGGTTCATCTCGACCTCTCGGACGGGTGAAGGA
TGAAAACCAAACTTTTGTTTTGTTTTTTGTTAGTGTTGTTGTGGCCTACC
ACAGTGGACTCCAGCCCGATCTCCGACCTTTGAAGATCACGGCATTCAAC
AGGATAGGAGACTCCCCCTAAAAGCTACTGCTGTGGTAGATTCAAGCACG
GCGTGCTCTCTGAGACCCTGCTGGTCGAGTCGATGCTCGATCGTGAGGCG
TTTTCTCATACATCTTGGAAGCCCCGGTTGACTTTTCTCCTCGGAGAGGG
TGCTCGATCGCGAAGCGTTCGTGCTCACGAAGAACCGGCTTGTAGTTATG
AAGTAGGGCTTCACCACGGATCGAACCGAGTAAGGCTTCGCTGGCGGTTT
GGACCACCAAGGGGAGCACCGTGTTTATTCCCGCAGCAAGAGAGGACGCT
TTTAACGTCGCGGTGGGCTGGAGGTACCGGAACGCGGTTGCCAACAAGGG
CTTCAACAAGTGTTATGTTACTGAAAATTCGCAGTATTTGATCAGGGGTT
CCGAAAAAGGTTATGGTTCCCCCAACAAGAAGCTGCCCTGGCCTGTGTCC
TCCATTTTTTTGCCGTGCGCGTGCGCTCACGAACAGGGCGAAGTGAACGT
GGGCAAGGTGGATGCGACGGCGAACAGGGGGTTGGTGAAGCGGTTCGGCA
TCAAGGTGATGAATTACTCACGGTAACCCCGGTCGCTCGGTTTGCTGTCA
CCATTTTATCTGTCTATAGCCGAGTCCTGCAAGTCCTTTGGATGAATTTT
TGCTCACGGGGCGGTGACAATGGCCGTGTGGGGGATCATTGTTGCAAGCG
CTTTTGTTCGTCTTCTGTTTAAAGAGCGGCACCGTAGCAATGGTGTGTTC
TTTCCGCTGCTGTCAAATTGGTGATGCTGAGCGCTCGTTTCCTTGTGTTT
CATGGTTGTTTCACGTACTGTTGACGTGTCGGCAAGCCCGAATATTTTTT
TGACGAACAGCGCAAATGACCGGTAGGATGGTGGTCACTCGAAGCTGGAG
TGCTCATTCAAACTATTTGACAGAGTCGTGTGGGCCGAGACCAAACGGAG
GTAGGACCAAGTGTTCGCGCGCAAGCTGGGTGGCCTTTCCCGTGTTGTGA
AAGAGACACCTCAAAAAGATAAGTTGTTTACTTTGTTGTCGTGGATACAT
GTGCTGTAGCGTCTACCTTTCCATCATCCACGTCCGTTCTGCTGCACGAA
CTCTACTCGAATTTCTTACGGCTGAGTTTGCACCACCCACCTCCACCATG
CTGCATGTTTTTCCATCGAAGTTGTCCCGACACAGTGGGGGTCCCTCAAT
AGTGCCACTGCCCGGCATAGTGCCGGTGAAATCGCGTGGCACGGCTGGAA
TGTCAAGTCGCCACCTTCTCTGCATGGAGCCGGGTGCTCGGTATAATTCC
ACCTCACCTGACGGGCACATACGTGCACCACACCTCAGTATTATTGGGTT
CGGTTCGTTCGCGGCACCGCGAAAATGCGACGAATAGGTTCGCCTGGGCG
CTCAAATGTTTGACCCGCATTGCTGGACCCGTAACTCTCCCCACGCCGTC
CACACAGGGCTTCCCGACGCTGTTGTTCTTCTCGCATGGGAACCTCCACA
AGTTCGCTGGCCCTCGCAAGATCGATTCCTTCATCGAATTT
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig587:35..4775-

>mRNA_Ecto-sp13_S_contig587.16370.1 ID=mRNA_Ecto-sp13_S_contig587.16370.1|Name=mRNA_Ecto-sp13_S_contig587.16370.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=534bp|location=Sequence derived from alignment at Ecto-sp13_S_contig587:35..4775- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGGTCGTCGGCAGGAAGAGTATGCGCTGTGCAATGGCCGTGTTGGG
GCTGCTGGTGCTCTCGATAGGTCTCATCTCGCCGAACGGTTCCTTCGTGA
CTGCCGAGGCAGCAGATGGCGCCGCCGCCGCCGCCGCCGAGATCCCCCCA
GAGCCAAAGATGGACGCCGACGAGGACGGGATGGGGGGCGCGGAGGGAGA
AGAGGAGCCGACCATCCCGGGGGCGACTGTCCAGGTGCTGACGGACGGCG
ACTTCGAGAGGATTACGCAGGCGTCGACGGGGGCCACGACCGGCGACTGG
TTCGTCGAATTTTACGCGCCGTGGTGTGGACACTGCCGAAAGCTGGATGG
CACGTGGACAGAGCTTGCGGAGAAGCTTGGGGGCGAAGTGAACGTGGGCA
AGGTGGATGCGACGGCGAACAGGGGGTTGGTGAAGCGGTTCGGCATCAAG
GGCTTCCCGACGCTGTTGTTCTTCTCGCATGGGAACCTCCACAAGTTCGC
TGGCCCTCGCAAGATCGATTCCTTCATCGAATTT
back to top