mRNA_Ecto-sp13_S_contig5869.16369.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5869.16369.1
Unique NamemRNA_Ecto-sp13_S_contig5869.16369.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig5869.16369.1 vs. uniprot
Match: D7FP06_ECTSI (Chalcone Isomerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FP06_ECTSI)

HSP 1 Score: 213 bits (541), Expect = 2.060e-65
Identity = 111/119 (93.28%), Postives = 115/119 (96.64%), Query Frame = 2 
Query:  455 MGAFKACMSTVSAAGALLLLLAAPQNLYARADVTERATKIAFREKVSLPGGGGSSLMGTGVRVKKIGPAGVKVYAVGLYVDEKAAAKELEVHKGEDGETLGKNDGFFARVAKSNFEKTM 811
            MGAFKAC ST++AAGALLLLLAAPQNL ARADVTERATKI+FREKVSLPGG GSSLMGTGVRVKKIGPAGVKVYAVGLYVDEKAAAKELEVHKGEDGE+LGKNDGFF RVAKSNFEKTM
Sbjct:    1 MGAFKACTSTLAAAGALLLLLAAPQNLCARADVTERATKISFREKVSLPGGSGSSLMGTGVRVKKIGPAGVKVYAVGLYVDEKAAAKELEVHKGEDGESLGKNDGFFTRVAKSNFEKTM 119
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BLAST of mRNA_Ecto-sp13_S_contig5869.16369.1 vs. uniprot
Match: A0A835Z9G1_9STRA (Chalcone isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9G1_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 6.340e-18
Identity = 50/104 (48.08%), Postives = 62/104 (59.62%), Query Frame = 2 
Query:  503 LLLLLAAPQNLYARADVTERATKIAFREKVSLPGGG-GSSLMGTGVRVKKIGPAGVKVYAVGLYVDEKAAAKELEVHKGEDGETLGKNDGFFARVAKSNFEKTM 811
            +L LL +       ADV E AT I+F++ + LPG     SL GTGVRVKKIGPA  KVYAVG+YVD   A  EL  H   +   L K+D FF     ++FEKT+
Sbjct:    3 ILALLLSAFAAVTLADVKEHATGISFKDTLKLPGASTAGSLAGTGVRVKKIGPAAFKVYAVGMYVDSAKARSELSKHSSTESRALSKSDAFFKDARSASFEKTL 106
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BLAST of mRNA_Ecto-sp13_S_contig5869.16369.1 vs. uniprot
Match: A0A7R9YAW0_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YAW0_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 8.270e-12
Identity = 47/113 (41.59%), Postives = 62/113 (54.87%), Query Frame = 2 
Query:  476 MSTVSAAGALLLLLAAPQNLYARADVTERATKIAFREKVS---LPGGGGSSLMGTGVRVKKIGPAGVKVYAVGLYVDEKAAAKELEVHKGEDGETLGKNDGFFARVAKSNFEK 805
            MS++  +  L L LA P          + AT I F  +++    PG G  +L GTGVRVKKIGP  VKVYAVGLYVD++A    L   +    ETL  +  FF  + K+ F+K
Sbjct:    1 MSSLCLSALLALALALPSR-----GAVDVATGIEFPNRITDKDFPGVGDGTLAGTGVRVKKIGPVAVKVYAVGLYVDQRAVQSSLNSFEAFPEETLLGSKAFFKAIRKAPFDK 108
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BLAST of mRNA_Ecto-sp13_S_contig5869.16369.1 vs. uniprot
Match: A0A6S9FSE1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9FSE1_HETAK)

HSP 1 Score: 66.2 bits (160), Expect = 2.200e-9
Identity = 41/91 (45.05%), Postives = 55/91 (60.44%), Query Frame = 2 
Query:  539 ARADVTERATKIAFREKVSLPGGGGSSLMGTGVRVKKIGPAGVKVYAVGLYVDEKAAAKELEVHKGEDGETLGK--NDGFFARVAKSNFEK 805
            A ADVTE  T I F ++      GG  L G GVRVK+IGP  VKVY VG+Y+DE +A +E+  + G      GK  + GFF+R+ K + +K
Sbjct:   18 ALADVTEPKTGIKFADRF-----GGLGLAGVGVRVKQIGPLSVKVYGVGMYMDESSALEEISEYAG------GKKADSGFFSRLRKPSIDK 97
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BLAST of mRNA_Ecto-sp13_S_contig5869.16369.1 vs. uniprot
Match: A0A7S1XYD8_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XYD8_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 1.280e-8
Identity = 44/106 (41.51%), Postives = 57/106 (53.77%), Query Frame = 2 
Query:  500 ALLLLLAAPQNLYARADVTERATKIAFREKVS---LPG-GGGSSLMGTGVRVKKIGPAGVKVYAVGLYVDEKAAAKELEVHKGEDGETLGKNDGFFARVAKSNFEK 805
            A+ L L AP          E AT + F+  +S    PG GG + L G G R+K+IGP  VKVYAVGLYVD++A    L   +    ETL  +  FF  + K+ FEK
Sbjct:   10 AVALALVAPLQA-----AVEAATGLDFKPTMSDSDFPGVGGDAKLAGMGCRIKQIGPVKVKVYAVGLYVDQRAVQSSLNSFEAFPEETLLGSKAFFKAIRKAPFEK 110
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BLAST of mRNA_Ecto-sp13_S_contig5869.16369.1 vs. uniprot
Match: A0A2N9IIV6_FAGSY (Chalcone-flavonone isomerase family protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9IIV6_FAGSY)

HSP 1 Score: 55.1 bits (131), Expect = 1.870e-5
Identity = 36/91 (39.56%), Postives = 52/91 (57.14%), Query Frame = 2 
Query:  545 ADVTER-ATKIAFREKVSLPGGGGS-SLMGTGVRVKKIGPAGVKVYAVGLYVDEKAAAKELEVHKGEDGETLGKNDGFFARVAKSNFEKTM 811
            A+ TE   T + F+  ++LPG  GS SL+GTG R K     GVKVYAVGLYV+    +K L   KG+    + ++   F  + +S  EK++
Sbjct:    7 AEYTEEPTTNVKFQRSLNLPGCSGSLSLLGTGYREKVFAIIGVKVYAVGLYVNPSILSK-LNAWKGQSTSEIQESPSLFNLIFQSPLEKSL 96
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BLAST of mRNA_Ecto-sp13_S_contig5869.16369.1 vs. uniprot
Match: W9RV67_9ROSA (Chalcone-flavonone isomerase family protein n=1 Tax=Morus notabilis TaxID=981085 RepID=W9RV67_9ROSA)

HSP 1 Score: 54.3 bits (129), Expect = 6.170e-5
Identity = 34/86 (39.53%), Postives = 50/86 (58.14%), Query Frame = 2 
Query:  557 ERATKIAFREKVSLPGGGGS-SLMGTGVRVKKIGPAGVKVYAVGLYVDEKAAAKELEVHKGEDGETLGKNDGFFARVAKSNFEKTM 811
            E ATK+AF+  +SLP    S SL+GTG R K     GVKVYAVGLYV+    +K L+   G     + ++   F+ + ++  EK++
Sbjct:   88 EPATKVAFQTTLSLPSCSSSLSLLGTGFREKVFAIIGVKVYAVGLYVNPSVFSK-LDSWNGRSAAEIQEDSSVFSSIFQAPLEKSL 172
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BLAST of mRNA_Ecto-sp13_S_contig5869.16369.1 vs. uniprot
Match: A0A328DXE1_9ASTE (Chalcone-flavonone isomerase family protein n=3 Tax=Cuscuta sect. Cleistogrammica TaxID=1824901 RepID=A0A328DXE1_9ASTE)

HSP 1 Score: 53.9 bits (128), Expect = 8.230e-5
Identity = 35/86 (40.70%), Postives = 49/86 (56.98%), Query Frame = 2 
Query:  557 ERATKIAFREKVSLPGGGGS-SLMGTGVRVKKIGPAGVKVYAVGLYVDEKAAAKELEVHKGEDGETLGKNDGFFARVAKSNFEKTM 811
            E ATK+ F+  +S+PG   S SL+GTG R K     GVKVYAVGL+V+E    K L+  +G     + K+   F  + K   EK++
Sbjct:   81 EPATKVKFQTSLSIPGCSESLSLVGTGYREKVFALIGVKVYAVGLHVNESIFGK-LDAWRGRSAAEMMKDSFLFETIFKVPMEKSI 165
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5869.16369.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7FP06_ECTSI2.060e-6593.28Chalcone Isomerase n=2 Tax=Ectocarpus TaxID=2879 R... [more]
A0A835Z9G1_9STRA6.340e-1848.08Chalcone isomerase n=1 Tax=Tribonema minus TaxID=3... [more]
A0A7R9YAW0_9STRA8.270e-1241.59Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A6S9FSE1_HETAK2.200e-945.05Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S1XYD8_9STRA1.280e-841.51Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A2N9IIV6_FAGSY1.870e-539.56Chalcone-flavonone isomerase family protein n=1 Ta... [more]
W9RV67_9ROSA6.170e-539.53Chalcone-flavonone isomerase family protein n=1 Ta... [more]
A0A328DXE1_9ASTE8.230e-540.70Chalcone-flavonone isomerase family protein n=3 Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5869contigEcto-sp13_S_contig5869:647..3324 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score213.0
Seed ortholog evalue9.4e-53
Seed eggNOG ortholog2880.D7FP06
Model size813
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.Chalcone isomerase-like
EggNOG OGs2E0MF@1,2S81H@2759
Ec32 ortholog descriptionChalcone Isomerase-like
Ec32 orthologEc-05_001880.1
Cds size441
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463815.4439774-CDS-Ecto-sp13_S_contig5869:646..7251681463815.4439774-CDS-Ecto-sp13_S_contig5869:646..725Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5869 647..725 -
1681463815.4551406-CDS-Ecto-sp13_S_contig5869:1380..14941681463815.4551406-CDS-Ecto-sp13_S_contig5869:1380..1494Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5869 1381..1494 -
1681463815.4673007-CDS-Ecto-sp13_S_contig5869:2140..23881681463815.4673007-CDS-Ecto-sp13_S_contig5869:2140..2388Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5869 2141..2388 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463815.4765682-UTR-Ecto-sp13_S_contig5869:2388..26781681463815.4765682-UTR-Ecto-sp13_S_contig5869:2388..2678Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5869 2389..2678 -
1681463815.4855845-UTR-Ecto-sp13_S_contig5869:3244..33241681463815.4855845-UTR-Ecto-sp13_S_contig5869:3244..3324Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5869 3245..3324 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5869.16369.1prot_Ecto-sp13_S_contig5869.16369.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5869 647..2388 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5869.16369.1

>prot_Ecto-sp13_S_contig5869.16369.1 ID=prot_Ecto-sp13_S_contig5869.16369.1|Name=mRNA_Ecto-sp13_S_contig5869.16369.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=147bp
MSPLYLSPPVSPFVVEDKRRTADARTTRMGAFKACMSTVSAAGALLLLLA
APQNLYARADVTERATKIAFREKVSLPGGGGSSLMGTGVRVKKIGPAGVK
VYAVGLYVDEKAAAKELEVHKGEDGETLGKNDGFFARVAKSNFEKTM
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mRNA from alignment at Ecto-sp13_S_contig5869:647..3324-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5869.16369.1 ID=mRNA_Ecto-sp13_S_contig5869.16369.1|Name=mRNA_Ecto-sp13_S_contig5869.16369.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2678bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5869:647..3324- (Ectocarpus species13 EcNAP12_S_4_19m)
TTGCAACAGCGCAGCGCCAGACACGTCACAGCGCAGCGGGTGGCTCGGCA
AGTGTATATTTTTTCTCGAAGCCGGGGTCGGTAAGCAATATGTAGACCAG
CGTGAGATGATTTAAACATATTGTATGCCGTGTGGGTGCCCCCCCCGTCT
GACATACAAACCATGTATGTTTGGATCGTGGAATACACATGCATCATTCA
GAGAAAGAACCTGCGCTGCTGTTGTGGCAGCAATGGTGGAGGCTATGCAC
ACCGCCGTGGCTATCGCGTCGTGTCATGCTTCAAAATTCAGCAACGGAAA
ACCCTTCGTACCACCGCTTGCAGGCGCCTGTAGTCATCGTGTTTGTTCAC
AATACATACGTAGTTGTTTGTAGTCTGCAGCATTTTGGCGGGAAGGGCGG
CAACGTTGAACTTGCATTTGTTCCTGGCCGAGTTGGAGAGAGGGCAGCAG
CATGGTGCCCTCCGCCGCCGCCTCTCGCTTGCTGTCGTGTGACGGCAACA
CCTGCTGTTGTGTGACGATTACACAGGAGCCATTATCGTACTTGTAGCCC
TAGTGGTATGTGGTGCAGCAGTAAGCTTTCTGTGCCAGAGGTCTGGCTGA
AAAAGACTCCCCGCGTATGCACATGACACACCGCCTACCGTCGCAGCGGG
AACAACGCGACCACGAGGCTATGTACTGCTGGTGATGCGGTTGACAGAGA
AACAATGACCACCCCATGGACATCGTCCTCCCTCGGGACCAACGCAACCG
CGACGCTACGCAGCGCAGGAGACTGTAATCAGCAATCAATGATATTCTCC
CGCAAGAAGCAAACCCCTGGAAGCAGGCCTGACGAGCAGAAGCAGTAGCG
AGTAAATGACCGCCGCCCTTAGGAGTTGTTGGCTGGGACGGCCAAGTCGC
CAGGTTCTCGAATACTGCAGCTCTTGCCGTTGAACAATGTCCCCCCTCTA
TCTCTCACCCCCCGTATCTCCTTTTGTTGTTGAAGACAAACGAAGGACTG
CAGACGCGCGAACAACAAGGATGGGAGCTTTCAAGGCGTGTATGTCCACC
GTATCGGCGGCGGGCGCACTGCTGCTGCTGCTGGCCGCACCCCAGAACCT
CTACGCCCGGGCCGACGTAACGGAAAGGGCGACCAAGATAGCGTTCCGGG
AAAAAGTCAGCCTACCCGGGGGGGGCGGCAGCAGGTGCAGCATTTGTGCG
TGTGTGTTGCTAGGATCGACCGCGCTAACCGGCTGACCAATGAGATGAAC
GACCGTCTCCGTGCGGTTGACAACGCCGAAGTGCGTGTATGCGTGTCCCT
TTTGTTCGGTAGCATAGACCGCGCTAACCAGCTGATCCATGCACATAGGT
CAGTCTTCGTGCGGTTGAAAACAGAAAGCGTTAGCATAGACCGCGCTAAC
CAGCTGACTTATGCACATAGGTCAGTCTTCGTGCGGTTGAAAACAGAAAG
CGTTTCTAAACTACCAAGCCCGGCAGTGAGTATGGAAGCGTGTCTGTGCG
TGTATTTTTTAGCGAGCATCACCTTGTGTGGGTACAGTTCCATCGCACTC
TTCCAGGCGTTTTCGTCTCCCTGCATGTTTTTTAGCATGCCCGAATCGAA
TCGTGATTCCCGCGCTTTCCCTCCCGTTGGCCCCTGCTGTTTTCTCCGCT
CTCATCTCTCCCTAAGGTGACTCATGTATCTCGTCTTCCGATTTTCCCGA
GCTTATTGGTGTTTCTCTTCCTCCACTGCTTCGTCTTTTGTCTCCCCCGC
CTCGCTGCATTTCTCCTCGCGGGGGCTGGGTCCGGTTGGCTGCCCTGCTC
GGGCGGGTGATACCGGGCAAATCAATTCAGCCTTATGGGGACTGGGGTAA
GAGTGAAGAAGATCGGGCCTGCGGGGGTTAAGGTTTACGCCGTCGGGCTT
TACGTGGACGAGAAGGCGGCCGCTAAGGAGCTCGAGGTTCACAAGTGAGT
TTTTTGGCCGGGGGGGGGAAGGTACTCATGTAAACGCATGCTGTGGTCTT
TAGAACGTTGACCTCGCATTGCCGTGACGAAGCGATATGCCGGGTTTTCG
CCGGCCCAGGCTGAGATAAACCAGAAACTGGTCATTGTAGTTGGGTTTGC
TGTGCCCAAGCAGATATGCCACGGGTTGATTGGGCATCCGGGCTAACCAA
ACGGGGGGTAGGGCGTGGTGTTGAAGATTGGAAGGGGGACGGCTATGGGT
AGGCAGGAGAGCGTCATAGATCGGGACTGCTGCTACTTTTTAAGAGTGCA
ACACATTTTTCCGGAACACAAGAATTGGAATGCGTGAGGTTTACTTGCTT
CCAAGAGTTCGGGGCAAGCAGCGATTCCTGTCCGAAAGCCGTGTTAATTT
TTTTTTTGTCTAGTGTACAACACGGTTGGAGAGTTGTGGCCACTACATCT
TAGTATTTCCGAGTTTGTTATTGGCATCATATCCTGACAGAGTGTCCATG
GGAAAAATTCTTGTTCACCACAGCCGCATTGGCAGCAGCCGTGTTTGCAC
GCAACTTTGGCCATCTATATTCTTCTTTCGCTTGTGCATACCAAACGTTC
GGCGTATTAAACCTCCCCCCCCCCCCCACGAATTTTCCGAAACCGGTAGA
GGCGAAGACGGAGAGACCCTTGGGAAAAACGACGGCTTTTTCGCGCGAGT
GGCCAAGTCCAACTTTGAGAAGACGATG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5869:647..3324-

>mRNA_Ecto-sp13_S_contig5869.16369.1 ID=mRNA_Ecto-sp13_S_contig5869.16369.1|Name=mRNA_Ecto-sp13_S_contig5869.16369.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=441bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5869:647..3324- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCCCCCCTCTATCTCTCACCCCCCGTATCTCCTTTTGTTGTTGAAGA
CAAACGAAGGACTGCAGACGCGCGAACAACAAGGATGGGAGCTTTCAAGG
CGTGTATGTCCACCGTATCGGCGGCGGGCGCACTGCTGCTGCTGCTGGCC
GCACCCCAGAACCTCTACGCCCGGGCCGACGTAACGGAAAGGGCGACCAA
GATAGCGTTCCGGGAAAAAGTCAGCCTACCCGGGGGGGGCGGCAGCAGCC
TTATGGGGACTGGGGTAAGAGTGAAGAAGATCGGGCCTGCGGGGGTTAAG
GTTTACGCCGTCGGGCTTTACGTGGACGAGAAGGCGGCCGCTAAGGAGCT
CGAGGTTCACAAAGGCGAAGACGGAGAGACCCTTGGGAAAAACGACGGCT
TTTTCGCGCGAGTGGCCAAGTCCAACTTTGAGAAGACGATG
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