mRNA_Ecto-sp13_S_contig58641.16362.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig58641.16362.1 vs. uniprot
Match: D8LJR5_ECTSI (Elongator complex protein 3 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJR5_ECTSI) HSP 1 Score: 86.3 bits (212), Expect = 1.260e-18 Identity = 39/41 (95.12%), Postives = 41/41 (100.00%), Query Frame = 1
Query: 4 DQTLYGFLRLRIPSGTSPILPDLKGCALIRELHVYGKLKKV 126
++TLYGFLRLRIPSGTSPILPDLKGCALIRELHVYGKLKKV
Sbjct: 471 EETLYGFLRLRIPSGTSPILPDLKGCALIRELHVYGKLKKV 511
BLAST of mRNA_Ecto-sp13_S_contig58641.16362.1 vs. uniprot
Match: A0A7S3UVY7_HETAK (Elongator complex protein 3 (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UVY7_HETAK) HSP 1 Score: 67.0 bits (162), Expect = 7.090e-12 Identity = 28/41 (68.29%), Postives = 35/41 (85.37%), Query Frame = 1
Query: 4 DQTLYGFLRLRIPSGTSPILPDLKGCALIRELHVYGKLKKV 126
+ LYGFLRLRIPSG SP++P L+G AL+RELHVYG L++V
Sbjct: 273 ESVLYGFLRLRIPSGNSPLVPGLRGAALVRELHVYGLLRRV 313
BLAST of mRNA_Ecto-sp13_S_contig58641.16362.1 vs. uniprot
Match: A0A836CEU0_9STRA (Elongator complex protein 3 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEU0_9STRA) HSP 1 Score: 66.6 bits (161), Expect = 1.030e-11 Identity = 31/41 (75.61%), Postives = 35/41 (85.37%), Query Frame = 1
Query: 4 DQTLYGFLRLRIPSGTSPILPDLKGCALIRELHVYGKLKKV 126
++ LYGFLRLRIPS S L +LKGCALIRELHVYGKLK+V
Sbjct: 469 EKVLYGFLRLRIPSRRSQCLLELKGCALIRELHVYGKLKEV 509
BLAST of mRNA_Ecto-sp13_S_contig58641.16362.1 vs. uniprot
Match: A0A6N1P2T5_9VIRU (Radical SAM core domain-containing protein n=1 Tax=Tupanvirus soda lake TaxID=2126985 RepID=A0A6N1P2T5_9VIRU) HSP 1 Score: 57.0 bits (136), Expect = 2.540e-8 Identity = 24/42 (57.14%), Postives = 33/42 (78.57%), Query Frame = 1
Query: 4 DQTL-YGFLRLRIPSGTSPILPDLKGCALIRELHVYGKLKKV 126
D+T+ YGF RLR+ +S ++P+L GCA+IRELHVYGK+ V
Sbjct: 489 DETIIYGFCRLRLTPNSSTVMPELDGCAMIRELHVYGKMNAV 530
BLAST of mRNA_Ecto-sp13_S_contig58641.16362.1 vs. uniprot
Match: A0A2G9NCJ9_9ARCH (tRNA uridine(34) 5-carboxymethylaminomethyl modification radical SAM/GNAT enzyme Elp3 (Fragment) n=1 Tax=Candidatus Pacearchaeota archaeon CG10_big_fil_rev_8_21_14_0_10_35_13 TaxID=1974445 RepID=A0A2G9NCJ9_9ARCH) HSP 1 Score: 55.5 bits (132), Expect = 4.200e-8 Identity = 20/38 (52.63%), Postives = 29/38 (76.32%), Query Frame = 1
Query: 1 TDQTLYGFLRLRIPSGTSPILPDLKGCALIRELHVYGK 114
++ L+G LRLR P SP++P+L CA++RE+HVYGK
Sbjct: 91 SENVLFGLLRLRFPGSPSPLIPELNDCAIVREVHVYGK 128
BLAST of mRNA_Ecto-sp13_S_contig58641.16362.1 vs. uniprot
Match: A0A3A0BA09_9BACT (tRNA uridine(34) 5-carboxymethylaminomethyl modification radical SAM/GNAT enzyme Elp3 n=1 Tax=Candidatus Microgenomates bacterium TaxID=2093373 RepID=A0A3A0BA09_9BACT) HSP 1 Score: 56.2 bits (134), Expect = 4.760e-8 Identity = 22/37 (59.46%), Postives = 28/37 (75.68%), Query Frame = 1
Query: 4 DQTLYGFLRLRIPSGTSPILPDLKGCALIRELHVYGK 114
DQ LY LRLR+P +SP+ P+L CA+IRE+H YGK
Sbjct: 413 DQKLYSLLRLRLPEVSSPLFPELSDCAIIREIHTYGK 449
BLAST of mRNA_Ecto-sp13_S_contig58641.16362.1 vs. uniprot
Match: A0A812I3D1_9DINO (Hypothetical protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812I3D1_9DINO) HSP 1 Score: 55.8 bits (133), Expect = 6.500e-8 Identity = 26/41 (63.41%), Postives = 29/41 (70.73%), Query Frame = 1
Query: 4 DQTLYGFLRLRI---PSGTSPILPDLKGCALIRELHVYGKL 117
+ TLYG LRLR P SP+ P+L GCALIRELHVYG L
Sbjct: 583 NATLYGLLRLRFNDDPRAPSPVFPELSGCALIRELHVYGAL 623
BLAST of mRNA_Ecto-sp13_S_contig58641.16362.1 vs. uniprot
Match: A0A6C0LYY4_9ZZZZ (N-acetyltransferase domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0LYY4_9ZZZZ) HSP 1 Score: 55.8 bits (133), Expect = 6.500e-8 Identity = 22/38 (57.89%), Postives = 30/38 (78.95%), Query Frame = 1
Query: 4 DQTLYGFLRLRIPSGTSPILPDLKGCALIRELHVYGKL 117
++T+YGF+RLR+ + + +L GCALIRELHVYGKL
Sbjct: 490 NKTIYGFIRLRLDDAKNKVFEELNGCALIRELHVYGKL 527
BLAST of mRNA_Ecto-sp13_S_contig58641.16362.1 vs. uniprot
Match: K2C2V9_9BACT (Radical SAM core domain-containing protein n=1 Tax=uncultured bacterium TaxID=77133 RepID=K2C2V9_9BACT) HSP 1 Score: 55.5 bits (132), Expect = 8.900e-8 Identity = 23/38 (60.53%), Postives = 30/38 (78.95%), Query Frame = 1
Query: 4 DQTLYGFLRLRIPSG-TSPILPDLKGCALIRELHVYGK 114
D L+ LRLR+P G T+P+ P+LKGCALIRE+H YG+
Sbjct: 399 DTKLFSLLRLRLPDGQTAPLFPELKGCALIREIHTYGQ 436
BLAST of mRNA_Ecto-sp13_S_contig58641.16362.1 vs. uniprot
Match: A0A6C0BEA8_9ZZZZ (Elp3 domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0BEA8_9ZZZZ) HSP 1 Score: 55.1 bits (131), Expect = 1.220e-7 Identity = 27/41 (65.85%), Postives = 31/41 (75.61%), Query Frame = 1
Query: 4 DQTLYGFLRLRIPSGTSPILPD-LKGCALIRELHVYGKLKK 123
++ LYGF+RLR PS I+ D LKGCALIRELHVYG L K
Sbjct: 488 NKVLYGFVRLRFPSHDQSIVFDELKGCALIRELHVYGNLTK 528 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig58641.16362.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig58641.16362.1 >prot_Ecto-sp13_S_contig58641.16362.1 ID=prot_Ecto-sp13_S_contig58641.16362.1|Name=mRNA_Ecto-sp13_S_contig58641.16362.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=42bp TDQTLYGFLRLRIPSGTSPILPDLKGCALIRELHVYGKLKKVback to top mRNA from alignment at Ecto-sp13_S_contig58641:610..735- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig58641.16362.1 ID=mRNA_Ecto-sp13_S_contig58641.16362.1|Name=mRNA_Ecto-sp13_S_contig58641.16362.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=126bp|location=Sequence derived from alignment at Ecto-sp13_S_contig58641:610..735- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig58641:610..735- >mRNA_Ecto-sp13_S_contig58641.16362.1 ID=mRNA_Ecto-sp13_S_contig58641.16362.1|Name=mRNA_Ecto-sp13_S_contig58641.16362.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=126bp|location=Sequence derived from alignment at Ecto-sp13_S_contig58641:610..735- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |