mRNA_Ecto-sp13_S_contig58619.16357.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig58619.16357.1
Unique NamemRNA_Ecto-sp13_S_contig58619.16357.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig58619.16357.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig58619contigEcto-sp13_S_contig58619:2..623 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size622
Hectar predicted targeting categoryother localisation
Exons1
Cds size339
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463813.9902873-UTR-Ecto-sp13_S_contig58619:1..1291681463813.9902873-UTR-Ecto-sp13_S_contig58619:1..129Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig58619 2..129 +
1681463814.0111341-UTR-Ecto-sp13_S_contig58619:468..6231681463814.0111341-UTR-Ecto-sp13_S_contig58619:468..623Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig58619 469..623 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463814.0021074-CDS-Ecto-sp13_S_contig58619:129..4681681463814.0021074-CDS-Ecto-sp13_S_contig58619:129..468Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig58619 130..468 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig58619.16357.1prot_Ecto-sp13_S_contig58619.16357.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig58619 130..468 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig58619.16357.1

>prot_Ecto-sp13_S_contig58619.16357.1 ID=prot_Ecto-sp13_S_contig58619.16357.1|Name=mRNA_Ecto-sp13_S_contig58619.16357.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=113bp
MYIAICIDLSHPKTGRAACCHYVFFSTVCRAKIHHDTPPRSCNPSSHVQE
YPPFDGYWASTLNFEKKKNVYDSASLLPPSSRVTTTNKYTNPESRFYHHI
VLAWHDSSNSAG*
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mRNA from alignment at Ecto-sp13_S_contig58619:2..623+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig58619.16357.1 ID=mRNA_Ecto-sp13_S_contig58619.16357.1|Name=mRNA_Ecto-sp13_S_contig58619.16357.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=622bp|location=Sequence derived from alignment at Ecto-sp13_S_contig58619:2..623+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAATAACACCCGCCGGCTCTCAATCACTCGATGGTCAGTTTCATCTTTCC
ACAAACCAGAAGACACACCGGGACAAAGCTCCACCCCTGGTTGAGGTCCG
GTTCGTTCAGTCTTTGGGAAAGACATGCATGTACATAGCAATATGCATTG
ATTTATCTCACCCAAAGACAGGGAGGGCAGCATGCTGCCATTATGTGTTC
TTCTCGACGGTATGTAGAGCTAAAATCCACCACGATACCCCTCCTCGCTC
CTGCAATCCAAGTTCACACGTACAAGAGTACCCCCCTTTTGACGGTTACT
GGGCCAGTACCTTAAATTTCGAAAAAAAAAAAAATGTTTACGACAGCGCT
TCACTACTACCGCCTTCATCCCGGGTTACGACAACAAATAAATATACTAA
TCCTGAGTCGAGATTTTACCACCATATTGTTCTGGCATGGCATGACTCCT
CAAACTCTGCGGGTTGATCATCATTGCTTTGCGTCAATTTCTCCTCATAC
CGAGTCACAATGATCGTTTCAGAGCTAGCGTTTGTCGACGTCTGACTGCT
GTCTCCCCACAACTGTACTAGTACCTCTACATCCACCATCAATACTTCTG
TAAGCATAACCAGCAAGCCCCT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig58619:2..623+

>mRNA_Ecto-sp13_S_contig58619.16357.1 ID=mRNA_Ecto-sp13_S_contig58619.16357.1|Name=mRNA_Ecto-sp13_S_contig58619.16357.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=339bp|location=Sequence derived from alignment at Ecto-sp13_S_contig58619:2..623+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTACATAGCAATATGCATTGATTTATCTCACCCAAAGACAGGGAGGGC
AGCATGCTGCCATTATGTGTTCTTCTCGACGGTATGTAGAGCTAAAATCC
ACCACGATACCCCTCCTCGCTCCTGCAATCCAAGTTCACACGTACAAGAG
TACCCCCCTTTTGACGGTTACTGGGCCAGTACCTTAAATTTCGAAAAAAA
AAAAAATGTTTACGACAGCGCTTCACTACTACCGCCTTCATCCCGGGTTA
CGACAACAAATAAATATACTAATCCTGAGTCGAGATTTTACCACCATATT
GTTCTGGCATGGCATGACTCCTCAAACTCTGCGGGTTGA
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