mRNA_Ecto-sp13_S_contig586.16353.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig586.16353.1 vs. uniprot
Match: A0A6H5JNE6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNE6_9PHAE) HSP 1 Score: 258 bits (659), Expect = 3.770e-83 Identity = 133/142 (93.66%), Postives = 136/142 (95.77%), Query Frame = 1
Query: 1 QGGVVLGADTRATGGKTVCDRNCDKIHILASNIACCGAGTSADAVRITEGARLALLRMAREMQACLPSSRSPLLQRQSRPDGGRPLARCDSGLDEVQRKHLRVGAAALLLKRHLFRYQGTASAALVLGGVDVIGEHIYQARM 426
+GGVVLGADTRATGGKTVCDRNCDKIHILASNIACCGAGTSADAVRITEGARLALLRMAREMQACLPSSRSPLLQ QSR DG RPLA CDSGLDEVQRKHLRVGAAALLL+RHLFRYQGT SAALVLGGVDVIGEHIYQA +
Sbjct: 79 EGGVVLGADTRATGGKTVCDRNCDKIHILASNIACCGAGTSADAVRITEGARLALLRMAREMQACLPSSRSPLLQSQSRADGERPLASCDSGLDEVQRKHLRVGAAALLLERHLFRYQGTVSAALVLGGVDVIGEHIYQAPL 220
BLAST of mRNA_Ecto-sp13_S_contig586.16353.1 vs. uniprot
Match: D7FTB7_ECTSI (Proteasome subunit beta 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTB7_ECTSI) HSP 1 Score: 251 bits (640), Expect = 3.880e-81 Identity = 131/139 (94.24%), Postives = 132/139 (94.96%), Query Frame = 1
Query: 1 QGGVVLGADTRATGGKTVCDRNCDKIHILASNIACCGAGTSADAVRITEGARLALLRMAREMQACLPSSRSPLLQRQSRPDGGRPLARCDSGLDEVQRKHLRVGAAALLLKRHLFRYQGTASAALVLGGVDVIGEHIYQ 417
+GGVVLGADTRATGGKTVCDRNCDKIHILASNIACCGAGTSADAVRITEGARLALLRMAREMQACLPSSRSPLLQ QSR D R LA CDSGLDEVQRKHLRVGAAALLLKRHLFRYQGT SAALVLGGVDVIGEHIYQ
Sbjct: 13 EGGVVLGADTRATGGKTVCDRNCDKIHILASNIACCGAGTSADAVRITEGARLALLRMAREMQACLPSSRSPLLQCQSRADEERALASCDSGLDEVQRKHLRVGAAALLLKRHLFRYQGTVSAALVLGGVDVIGEHIYQ 151
BLAST of mRNA_Ecto-sp13_S_contig586.16353.1 vs. uniprot
Match: A0A6H5L5A8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5A8_9PHAE) HSP 1 Score: 116 bits (290), Expect = 5.220e-29 Identity = 59/68 (86.76%), Postives = 61/68 (89.71%), Query Frame = 1
Query: 223 QRQSRPDGGRPLARCDSGLDEVQRKHLRVGAAALLLKRHLFRYQGTASAALVLGGVDVIGEHIYQARM 426
Q QSR DG RPLA CDSGLDEVQRKHLRVGAAALLLKRHLF+YQGT SAA VLGGVDVIGEHIYQA +
Sbjct: 66 QCQSRADGERPLASCDSGLDEVQRKHLRVGAAALLLKRHLFQYQGTVSAAFVLGGVDVIGEHIYQAPL 133
BLAST of mRNA_Ecto-sp13_S_contig586.16353.1 vs. uniprot
Match: A0A836CF21_9STRA (Nucleophile aminohydrolase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CF21_9STRA) HSP 1 Score: 107 bits (266), Expect = 4.890e-25 Identity = 62/135 (45.93%), Postives = 77/135 (57.04%), Query Frame = 1
Query: 10 VVLGADTRATGGKTVCDRNCDKIHILASNIACCGAGTSADAVRITEGARLALLRMAREMQACLPSSRSPLLQRQSRPDGGRPLARCDSGLDEVQRKHLRVGAAALLLKRHLFRYQGTASAALVLGGVDVIGEHIY 414
+VLGADTRAT +TV D+NC+KIH +A+NI CCGAGTSAD R+T ARL ++ R MQ+ P+ L D+VQR+H RV AA LK + SAA VLGGVD G H+Y
Sbjct: 63 LVLGADTRATNDRTVADKNCEKIHKIAANIYCCGAGTSADCERLTLEARLRMMEFTRLMQSVHPAHSGEL------------------STDDVQRQHCRVAAAHRFLKNATYHSVEDVSAAFVLGGVDTTGPHLY 179
BLAST of mRNA_Ecto-sp13_S_contig586.16353.1 vs. uniprot
Match: A0A8J9SHT9_PHATR (Hypothetical protein (Fragment) n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9SHT9_PHATR) HSP 1 Score: 103 bits (256), Expect = 1.100e-24 Identity = 69/148 (46.62%), Postives = 79/148 (53.38%), Query Frame = 1
Query: 4 GGVVLGADTRATGGKTVCDRNCDKIHILASNIACCGAGTSADAVRITE--GARLALLRMAREMQACLPSSRSPLLQRQSRPDGGRPLARCDSGLDEVQRKHLRVGAAALLLKRHLFRYQGTASAALVLGGVDVIGEHIYQARMYDSFS 441
GGVVLGADTRATGG V ++NC+KIH LA N+ CCGAGT+AD + T ++L LLRM PS RV A LLKR LFRYQG SAALVLGGVDV G H+YQ + S S
Sbjct: 17 GGVVLGADTRATGGTEVAEKNCEKIHYLAPNMYCCGAGTAADTEKTTALISSQLELLRM----DTHAPS---------------------------------RVVTACTLLKRMLFRYQGHVSAALVLGGVDVHGPHVYQIYPHGSTS 127
BLAST of mRNA_Ecto-sp13_S_contig586.16353.1 vs. uniprot
Match: A0A835ZKI2_9STRA (Proteasome endopeptidase complex n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZKI2_9STRA) HSP 1 Score: 105 bits (261), Expect = 1.510e-24 Identity = 65/145 (44.83%), Postives = 78/145 (53.79%), Query Frame = 1
Query: 7 GVVLGADTRATGGKTVCDRNCDKIHILASNIACCGAGTSADAVRITE--GARLALLRMAREMQACLPSSRSPLLQRQSRPDGGRPLARCDSGLDEVQRKHLRVGAAALLLKRHLFRYQGTASAALVLGGVDVIGEHIYQARMYDS 435
G+VLGADTRATGG VCD+NC+KIH LA NI CCGAGT+AD + TE ++L LLR++ Q+ RV A +LKR LFRYQG SAALVLGGVD G H+Y + S
Sbjct: 69 GIVLGADTRATGGTEVCDKNCEKIHYLAPNIYCCGAGTAADTEKTTELISSQLDLLRLSTGTQS-------------------------------------RVVTACTMLKRMLFRYQGHVSAALVLGGVDATGPHLYNIYPHGS 176
BLAST of mRNA_Ecto-sp13_S_contig586.16353.1 vs. uniprot
Match: A0A7S1U940_9STRA (Proteasome subunit beta n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U940_9STRA) HSP 1 Score: 105 bits (261), Expect = 1.680e-24 Identity = 66/145 (45.52%), Postives = 81/145 (55.86%), Query Frame = 1
Query: 7 GVVLGADTRATGGKTVCDRNCDKIHILASNIACCGAGTSADAVRITEGARLALLRMAREMQACLPSSRSPLLQRQSRPDGGRPLARCDSGLDEVQRKHLRVGAAALLLKRHLFRYQGTASAALVLGGVDVIGEHIYQARMYDSFS 441
GVVLGADTRATGG +CD+NC+KIH +A NI CCGAGT+AD + TE +A +++ LAR ++G E R A LLKR LFRYQG SAALVLGGVD +G H+Y + S S
Sbjct: 67 GVVLGADTRATGGSEICDKNCEKIHYIAPNIFCCGAGTAADTEKTTE-------MIASQLE----------------------LARLNAGGVES-----RTVTACTLLKRMLFRYQGHISAALVLGGVDAMGVHLYDVYPHGSTS 177
BLAST of mRNA_Ecto-sp13_S_contig586.16353.1 vs. uniprot
Match: D7FSE0_ECTSI (Proteasome endopeptidase complex n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSE0_ECTSI) HSP 1 Score: 105 bits (261), Expect = 1.800e-24 Identity = 67/147 (45.58%), Postives = 79/147 (53.74%), Query Frame = 1
Query: 1 QGGVVLGADTRATGGKTVCDRNCDKIHILASNIACCGAGTSADAVRITE--GARLALLRMAREMQACLPSSRSPLLQRQSRPDGGRPLARCDSGLDEVQRKHLRVGAAALLLKRHLFRYQGTASAALVLGGVDVIGEHIYQARMYDS 435
+GGVVLGADTRATGG V D+NC+KIH LA NI CCGAGT+AD + TE +L LLR++ Q+ RV A +LKR LFRYQG SAALVLGGVDV G H+Y + S
Sbjct: 75 KGGVVLGADTRATGGTEVVDKNCEKIHYLAPNIYCCGAGTAADTEKTTEMISGQLDLLRLSTGTQS-------------------------------------RVVTACTMLKRMLFRYQGYVSAALVLGGVDVTGPHLYNIYPHGS 184
BLAST of mRNA_Ecto-sp13_S_contig586.16353.1 vs. uniprot
Match: A0A7S2UAG4_9STRA (Proteasome subunit beta n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UAG4_9STRA) HSP 1 Score: 103 bits (257), Expect = 5.140e-24 Identity = 67/145 (46.21%), Postives = 80/145 (55.17%), Query Frame = 1
Query: 1 QGGVVLGADTRATGGKTVCDRNCDKIHILASNIACCGAGTSADAVRITEGARLALLRMAREMQACLPSSRSPLLQRQSRPDGGRPLARCDSGLDEVQRKHLRVGAAALLLKRHLFRYQGTASAALVLGGVDVIGEHIYQARMYDS 435
+GGVVLGADTRATGG V D++C+KIH LA NI CCGAGT+AD + TE L SS+ LL R ++G+ RV A LLKR LF+YQG SAALVLGG D G H+YQ + S
Sbjct: 56 KGGVVLGADTRATGGTEVADKDCEKIHYLAPNIYCCGAGTAADTEKTTE----------------LISSQMELL-------------RMNTGVSS------RVVTACTLLKRMLFKYQGHVSAALVLGGCDATGPHVYQIYPHGS 165
BLAST of mRNA_Ecto-sp13_S_contig586.16353.1 vs. uniprot
Match: A0A7S2CLY8_9STRA (Proteasome subunit beta n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CLY8_9STRA) HSP 1 Score: 103 bits (257), Expect = 5.820e-24 Identity = 66/145 (45.52%), Postives = 77/145 (53.10%), Query Frame = 1
Query: 7 GVVLGADTRATGGKTVCDRNCDKIHILASNIACCGAGTSADAVRITE--GARLALLRMAREMQACLPSSRSPLLQRQSRPDGGRPLARCDSGLDEVQRKHLRVGAAALLLKRHLFRYQGTASAALVLGGVDVIGEHIYQARMYDS 435
GVVLGADTRATGG VCD+NC+KIH L+ NI CCGAGT+AD + TE ++L L R+ MQ+ RV A LLKR LFRYQG SAALVLGG DV G H+Y + S
Sbjct: 65 GVVLGADTRATGGTEVCDKNCEKIHYLSDNIYCCGAGTAADTEKTTEMISSQLELHRLNTGMQS-------------------------------------RVVTAVTLLKRMLFRYQGHVSAALVLGGCDVNGSHLYHIYPHGS 172 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig586.16353.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig586.16353.1 >prot_Ecto-sp13_S_contig586.16353.1 ID=prot_Ecto-sp13_S_contig586.16353.1|Name=mRNA_Ecto-sp13_S_contig586.16353.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=149bp QGGVVLGADTRATGGKTVCDRNCDKIHILASNIACCGAGTSADAVRITEGback to top mRNA from alignment at Ecto-sp13_S_contig586:22859..23578- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig586.16353.1 ID=mRNA_Ecto-sp13_S_contig586.16353.1|Name=mRNA_Ecto-sp13_S_contig586.16353.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=720bp|location=Sequence derived from alignment at Ecto-sp13_S_contig586:22859..23578- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig586:22859..23578- >mRNA_Ecto-sp13_S_contig586.16353.1 ID=mRNA_Ecto-sp13_S_contig586.16353.1|Name=mRNA_Ecto-sp13_S_contig586.16353.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=447bp|location=Sequence derived from alignment at Ecto-sp13_S_contig586:22859..23578- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |