mRNA_Ecto-sp13_S_contig586.16351.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig586.16351.1
Unique NamemRNA_Ecto-sp13_S_contig586.16351.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig586.16351.1 vs. uniprot
Match: A0A6H5JNE6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNE6_9PHAE)

HSP 1 Score: 291 bits (744), Expect = 2.830e-95
Identity = 152/190 (80.00%), Postives = 157/190 (82.63%), Query Frame = 1 
Query:    1 IHEGGSLAEVEFTAMGSGSLAALSVLERGYRENLTEQEAKELVLEGIAAGIDNDLGSGSNIDLCVITAERGLEHHRGVWTDPGLDADGIAARELPEGSCGSENDNKMGQADARLAPRGIESLQQNQRDVSGDSESDGFDVVAGGEGGSRAWVGNVRRRNREKIVIKVDHDDDGALRRYRCSALDDTIELL 570
            IHEGGSLAEVEFTAMGSGSLAALSVLERGYREN+TEQEAKELVLEGIAAGIDNDLGSGSNIDLCVITAERGLEHHRG WTDPGLD DGIAARELPEG                     IES Q NQ D S D+ES GFDV+ GGEGGS AWVGNVRRRNREK V+KVDHDDDGALRRYRCSALDD IE+L
Sbjct:  221 IHEGGSLAEVEFTAMGSGSLAALSVLERGYRENMTEQEAKELVLEGIAAGIDNDLGSGSNIDLCVITAERGLEHHRGAWTDPGLDDDGIAARELPEG---------------------IESWQPNQLDASDDTESGGFDVIVGGEGGSGAWVGNVRRRNREKSVMKVDHDDDGALRRYRCSALDDKIEVL 389
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BLAST of mRNA_Ecto-sp13_S_contig586.16351.1 vs. uniprot
Match: A0A6H5L5A8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5A8_9PHAE)

HSP 1 Score: 224 bits (571), Expect = 1.340e-70
Identity = 120/153 (78.43%), Postives = 121/153 (79.08%), Query Frame = 1 
Query:    1 IHEGGSLAEVEFTAMGSGSLAALSVLERGYRENLTEQEAKELVLEGIAAGIDNDLGSGSNIDLCVITAERGLEHHRGVWTDPGLDADGIAARELPEGSCGSENDNKMGQADARLAPRGIESLQQNQRDVSGDSESDGFDVVAGGEGGSRAWVG 459
            IHEGGSLAEVEFTAMGSGSLAALSVLERGYRENLTEQE KELVLEGIAAGIDNDLGSGSNIDLCVITAE GLEHHRG WTDPGLD DGIAARELPEG                     IE L+ NQ D SGDSE DGFDVV GGEGGS AWVG
Sbjct:  134 IHEGGSLAEVEFTAMGSGSLAALSVLERGYRENLTEQETKELVLEGIAAGIDNDLGSGSNIDLCVITAEGGLEHHRGAWTDPGLDDDGIAARELPEG---------------------IERLEPNQLDASGDSERDGFDVVVGGEGGSGAWVG 265
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BLAST of mRNA_Ecto-sp13_S_contig586.16351.1 vs. uniprot
Match: D7FTB7_ECTSI (Proteasome subunit beta 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTB7_ECTSI)

HSP 1 Score: 212 bits (540), Expect = 2.670e-65
Identity = 111/121 (91.74%), Postives = 111/121 (91.74%), Query Frame = 1 
Query:    1 IHEGGSLAEVEFTAMGSGSLAALSVLERGYRENLTEQEAKELVLEGIAAGIDNDLGSGSNIDLCVITAERGLEHHRGVWTDPGLDADGIAARELPEGSCGSENDNKMGQA---DARLAPRG 354
            IHEGGSLAEVEFTAMGSGSLAALSVLERGYRENLTEQEAKELVLEGIAAGIDNDLGSGSNIDLCVITAERGLEHHRG WTDPGLD D IAARELPEGS GSENDNKMGQ    DAR  PRG
Sbjct:  152 IHEGGSLAEVEFTAMGSGSLAALSVLERGYRENLTEQEAKELVLEGIAAGIDNDLGSGSNIDLCVITAERGLEHHRGAWTDPGLDDDDIAARELPEGSRGSENDNKMGQVQHTDARPIPRG 272
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BLAST of mRNA_Ecto-sp13_S_contig586.16351.1 vs. uniprot
Match: A3EXP1_MACHI (Proteasome subunit beta (Fragment) n=1 Tax=Maconellicoccus hirsutus TaxID=177089 RepID=A3EXP1_MACHI)

HSP 1 Score: 87.8 bits (216), Expect = 7.020e-18
Identity = 44/66 (66.67%), Postives = 54/66 (81.82%), Query Frame = 1 
Query:    1 IHEGGSLAEVEFTAMGSGSLAALSVLERGYRENLTEQEAKELVLEGIAAGIDNDLGSGSNIDLCVI 198
            IH  GS  ++ +T MGSGSLAA++V E  ++ +LTE+EAKELV EGIAAGI NDLGSGSN+DLCVI
Sbjct:  151 IHPHGSSDKLPYTTMGSGSLAAMAVFESKWKPDLTEEEAKELVKEGIAAGIFNDLGSGSNVDLCVI 216
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BLAST of mRNA_Ecto-sp13_S_contig586.16351.1 vs. uniprot
Match: A0A0E9NIN0_SAICN (Proteasome subunit beta n=2 Tax=Saitoella complicata (strain BCRC 22490 / CBS 7301 / JCM 7358 / NBRC 10748 / NRRL Y-17804) TaxID=698492 RepID=A0A0E9NIN0_SAICN)

HSP 1 Score: 88.2 bits (217), Expect = 1.170e-17
Identity = 45/77 (58.44%), Postives = 59/77 (76.62%), Query Frame = 1 
Query:    1 IHEGGSLAEVEFTAMGSGSLAALSVLERGYRENLTEQEAKELVLEGIAAGIDNDLGSGSNIDLCVITAERGLEHHRG 231
            +H  GS  ++ F AMGSGSLAA++VLE  ++++LT QEA +LV   I+AGI NDLGSGSN+DLCVI AE+  + HRG
Sbjct:  150 VHAHGSTDKLPFVAMGSGSLAAMAVLESSWKKSLTRQEAMDLVTRAISAGIFNDLGSGSNVDLCVIDAEK-AQVHRG 225
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BLAST of mRNA_Ecto-sp13_S_contig586.16351.1 vs. uniprot
Match: A0A8J2B859_9DINO (Proteasome subunit beta n=1 Tax=Amoebophrya sp. A120 TaxID=2202890 RepID=A0A8J2B859_9DINO)

HSP 1 Score: 87.4 bits (215), Expect = 2.540e-17
Identity = 45/76 (59.21%), Postives = 57/76 (75.00%), Query Frame = 1 
Query:    1 IHEGGSLAEVEFTAMGSGSLAALSVLERGYRENLTEQEAKELVLEGIAAGIDNDLGSGSNIDLCVITAERGLEHHR 228
            IH  GS  ++ +T MGSGSLAA++V+E  YREN+T +E KELV + I+AGI NDLGSG N D+CVIT E G +H R
Sbjct:  169 IHAHGSTDKLPYTTMGSGSLAAMAVMEMRYRENMTIEEGKELVADAISAGIFNDLGSGGNCDICVITKE-GKKHIR 243
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BLAST of mRNA_Ecto-sp13_S_contig586.16351.1 vs. uniprot
Match: A0A1A8W562_PLAMA (Proteasome subunit beta n=34 Tax=Plasmodium TaxID=5820 RepID=A0A1A8W562_PLAMA)

HSP 1 Score: 86.7 bits (213), Expect = 3.410e-17
Identity = 44/76 (57.89%), Postives = 56/76 (73.68%), Query Frame = 1 
Query:    1 IHEGGSLAEVEFTAMGSGSLAALSVLERGYRENLTEQEAKELVLEGIAAGIDNDLGSGSNIDLCVITAERGLEHHR 228
            IH  GS   + FTA+GSGSL+A++VLE  YR+N+T  E KELV E I AGI NDLGSG N+D+C+IT + G +H R
Sbjct:  154 IHPHGSSCLLPFTALGSGSLSAMAVLEAKYRDNMTIDEGKELVCEAICAGIFNDLGSGGNVDICIITKD-GSQHLR 228
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BLAST of mRNA_Ecto-sp13_S_contig586.16351.1 vs. uniprot
Match: C1EBX1_MICCC (Proteasome subunit beta n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1EBX1_MICCC)

HSP 1 Score: 87.0 bits (214), Expect = 3.670e-17
Identity = 41/70 (58.57%), Postives = 54/70 (77.14%), Query Frame = 1 
Query:    1 IHEGGSLAEVEFTAMGSGSLAALSVLERGYRENLTEQEAKELVLEGIAAGIDNDLGSGSNIDLCVITAER 210
            +H  GS   + F  MGSGSLAA++V E  ++E++TE+EAKE+V   I AGI NDLGSGSN+DLCVITA++
Sbjct:  161 VHPHGSSDSLPFATMGSGSLAAMAVFEADFKEDMTEEEAKEIVARSIRAGIFNDLGSGSNVDLCVITADK 230
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BLAST of mRNA_Ecto-sp13_S_contig586.16351.1 vs. uniprot
Match: A0A7S1H3S5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1H3S5_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 3.910e-17
Identity = 42/80 (52.50%), Postives = 56/80 (70.00%), Query Frame = 1 
Query:    1 IHEGGSLAEVEFTAMGSGSLAALSVLERGYRENLTEQEAKELVLEGIAAGIDNDLGSGSNIDLCVITAERGLEHHRGVWT 240
            I+  GS  ++ +T MGSGSLAA+SV E+G+RE++ E EA ELV   I AG+ NDLGSGSN D CVI  +  + ++RG  T
Sbjct:    2 IYPYGSTGKLPYTTMGSGSLAAMSVFEQGWREDMPENEALELVRRSILAGVFNDLGSGSNCDTCVIRMDGTVSYNRGDVT 81
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BLAST of mRNA_Ecto-sp13_S_contig586.16351.1 vs. uniprot
Match: A0A3M7S2L2_BRAPC (Proteasome subunit beta n=1 Tax=Brachionus plicatilis TaxID=10195 RepID=A0A3M7S2L2_BRAPC)

HSP 1 Score: 86.3 bits (212), Expect = 5.530e-17
Identity = 42/70 (60.00%), Postives = 54/70 (77.14%), Query Frame = 1 
Query:    1 IHEGGSLAEVEFTAMGSGSLAALSVLERGYRENLTEQEAKELVLEGIAAGIDNDLGSGSNIDLCVITAER 210
            IH  GS   + +  MGSGSLAA++V E  Y+ +++E+EAKELV +GI AGI NDLGSGSN+DLCVIT +R
Sbjct:  152 IHPHGSSDRLPYVTMGSGSLAAMAVFEDRYKPDMSEEEAKELVADGIRAGIFNDLGSGSNVDLCVITKDR 221
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig586.16351.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JNE6_9PHAE2.830e-9580.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L5A8_9PHAE1.340e-7078.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTB7_ECTSI2.670e-6591.74Proteasome subunit beta 2 n=1 Tax=Ectocarpus silic... [more]
A3EXP1_MACHI7.020e-1866.67Proteasome subunit beta (Fragment) n=1 Tax=Maconel... [more]
A0A0E9NIN0_SAICN1.170e-1758.44Proteasome subunit beta n=2 Tax=Saitoella complica... [more]
A0A8J2B859_9DINO2.540e-1759.21Proteasome subunit beta n=1 Tax=Amoebophrya sp. A1... [more]
A0A1A8W562_PLAMA3.410e-1757.89Proteasome subunit beta n=34 Tax=Plasmodium TaxID=... [more]
C1EBX1_MICCC3.670e-1758.57Proteasome subunit beta n=1 Tax=Micromonas commoda... [more]
A0A7S1H3S5_9STRA3.910e-1752.50Hypothetical protein (Fragment) n=1 Tax=Thalassion... [more]
A0A3M7S2L2_BRAPC5.530e-1760.00Proteasome subunit beta n=1 Tax=Brachionus plicati... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig586contigEcto-sp13_S_contig586:19541..21807 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score214.2
Seed ortholog evalue5.5e-53
Seed eggNOG ortholog2880.D7FTB7
Model size573
KEGG koko:K02739
KEGG Pathwayko03050,map03050
KEGG ModuleM00340
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.threonine-type endopeptidase activity
EggNOG OGsCOG0638@1,KOG0173@2759
Ec32 ortholog descriptionproteasome subunit beta 2
Ec32 orthologEc-05_000270.1
EC3.4.25.1
Cds size573
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko03051
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463813.6994083-CDS-Ecto-sp13_S_contig586:19540..197611681463813.6994083-CDS-Ecto-sp13_S_contig586:19540..19761Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig586 19541..19761 -
1681463813.7154214-CDS-Ecto-sp13_S_contig586:20274..203371681463813.7154214-CDS-Ecto-sp13_S_contig586:20274..20337Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig586 20275..20337 -
1681463813.7315636-CDS-Ecto-sp13_S_contig586:20797..210051681463813.7315636-CDS-Ecto-sp13_S_contig586:20797..21005Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig586 20798..21005 -
1681463813.7431557-CDS-Ecto-sp13_S_contig586:21726..218071681463813.7431557-CDS-Ecto-sp13_S_contig586:21726..21807Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig586 21727..21807 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig586.16351.1prot_Ecto-sp13_S_contig586.16351.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig586 19541..21807 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig586.16351.1

>prot_Ecto-sp13_S_contig586.16351.1 ID=prot_Ecto-sp13_S_contig586.16351.1|Name=mRNA_Ecto-sp13_S_contig586.16351.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=191bp
IHEGGSLAEVEFTAMGSGSLAALSVLERGYRENLTEQEAKELVLEGIAAG
IDNDLGSGSNIDLCVITAERGLEHHRGVWTDPGLDADGIAARELPEGSCG
SENDNKMGQADARLAPRGIESLQQNQRDVSGDSESDGFDVVAGGEGGSRA
WVGNVRRRNREKIVIKVDHDDDGALRRYRCSALDDTIELL*
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mRNA from alignment at Ecto-sp13_S_contig586:19541..21807-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig586.16351.1 ID=mRNA_Ecto-sp13_S_contig586.16351.1|Name=mRNA_Ecto-sp13_S_contig586.16351.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2267bp|location=Sequence derived from alignment at Ecto-sp13_S_contig586:19541..21807- (Ectocarpus species13 EcNAP12_S_4_19m)
ATCCACGAGGGAGGAAGCCTCGCCGAGGTGGAATTCACGGCCATGGGTAG
CGGGAGCCTGGCAGCGTTGAGCGTTCTGGAGGTGATCTATTATTGCTGAC
GGCGCAGTTGTTGTTGTTATTGTTGTTGTTGCTATTGCTGGGGCACCCGC
TGTTTGTGGGAACCATGCCCAACCCATTTCTCGGGACCTCTGTGCAGAAC
CACCTTTTTCTGAAATTGTTCAACTGACAGACAAACGTAGACACGCGCCG
TCGAGGTCGCATACGGAACAACCTCTCCGCATTAAAGTATGTAGAGAATG
AGAGCCAGCTCAACGAACTGGTGGCGCGGTTGACGGCACGTCAAGTTCTG
CTCTACCGTAGGCGGGAAGACTTGTTGCAGTTTTTAGCTTGGGCACCCGT
ATTGGGAAAGCGGCATACGTGGTATTGTGTTGAAGTGCACTGCTCACACA
GCACTGTACGCGGCACGCTCAGAAGTATACATGTCTTGTTCGCAAGGTAC
ATGACTACCGAGGTACGACCACATTTCTACATGCGCGAGCCTGACAAGTC
GTGGTCAACACCTTACAAGTAAAACATGCCGGATGAAGTCTTGCGCGAGC
AGACGACCACTGATAGATACATCAGTCCGGTACCCATGTGATCCACGGTT
TCGCCGTCTCGAGGAGGAGGAAAGCGGAATTAGGTGTACCCTCAGACTGC
GCCCTAGGACGACACCACCCATTCAGCACGATAAGGGAGCAATTTCGGAG
TATTGACATGGGGAGCTAATATGTTGTTTGTATTTTCCGTTCCTCTTTTT
AGCGGGGTTACCGAGAAAACCTGACAGAACAAGAAGCCAAGGAGCTCGTA
CTAGAAGGCATCGCGGCGGGAATCGACAACGACTTGGGCAGCGGAAGCAA
CATCGACTTGTGCGTTATCACGGCGGAGCGAGGCCTGGAGCACCACAGGG
GGGTTTGGACAGATCCAGGCCTTGATGCCGACGGCATTGCTGCTCGTGAG
CTTCCCGAAGGTCGGTCCAAAACTGCACATGCTCGGAAATGAGGCACGCA
AAAATAAACATGGAACAGAAAACCATGTGATAGATGCGGAAGTCTACCCC
AGAACCAGATGATATCCCCCAAGAGCAAGAACGGGTGCGATTGTGACTCA
GCGTTCCTCATTATTGTGGGTTGTGAGGGGTGGTCGTGTTTACTCTTCCG
CCCGTATGACCTCAAAACATCGTGTGTTCTTGGGGGCACGGCCGGGCATA
TATCCCCGCGAGTGGCAAGACGATGACCGGGATCGTGATTCGCCAGAAGA
TGACAGGAGCGGGTAATACCGACAGCCCGTCTCTCCATGGTCATCACGGC
TAGGTCTGCATTTCTTGTCCTTGGTAAAAGTGACCGACTATCATGCCTGT
GCAAGGGTTGATAACGATACTAGACCTACCCCCCGCCACCGGACGCCATT
GGGACACATGCAACGTCCAGGTTCATGTGGTAGCGAAAATGACAACAAAA
TGGGGCAAGCCGACGCTCGCCTAGCACCAAGAGGTGACAACAGAAGGAGT
AGCCAAGAAGGCCCAACCTCCGCACCCAGCGGCGCCAACAACAACAAGCG
TTAGTAGATTGAGAGTCCCAAGCATAGCTCGTGCCTTGTGTAGGTCACTG
GTGCTGCTGAGGTCATCTGATGCTCTTGTTTTATGCAAGTACCCTCAGCC
ATAAATTGGAGTTAACGTGTACGAACGCAACCCCAAGCTGGGGCAGGTGA
GGGTGAGGCGATACTTGTCAGGACCAACTTGTTGTCCCCCCTGCGTCACG
CTCTGTTGGCCTTTGAGTCCAAGACGAGCATACCAACAACGCCAGGTGGC
CCGGTGAATGAGATGCTTTGTCTGCTGCGTCAATTTTCCTAGGCTCGAAG
CGTTTGATTCAACATGAACTTTCGGTGCGGATGATGCAGTCTGCTTTAGC
TCCACAAATCGATGCGTGTCTCCTGCCTGCGGCATGTCCAGGATGTGCCA
CGAAAGAAACATAATCGACCTAACAAATTCTTCCAACCCGTCGCAGGAAT
CGAGAGCTTGCAACAAAATCAGCGTGATGTGTCTGGTGACAGCGAAAGTG
ACGGTTTCGACGTCGTGGCCGGCGGAGAGGGTGGATCGAGAGCATGGGTG
GGAAACGTGCGTCGAAGAAACAGGGAGAAAATCGTTATAAAGGTGGACCA
CGACGATGATGGGGCTCTACGTAGGTATCGTTGCAGCGCCCTCGACGATA
CGATCGAACTGCTGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig586:19541..21807-

>mRNA_Ecto-sp13_S_contig586.16351.1 ID=mRNA_Ecto-sp13_S_contig586.16351.1|Name=mRNA_Ecto-sp13_S_contig586.16351.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=573bp|location=Sequence derived from alignment at Ecto-sp13_S_contig586:19541..21807- (Ectocarpus species13 EcNAP12_S_4_19m)
ATCCACGAGGGAGGAAGCCTCGCCGAGGTGGAATTCACGGCCATGGGTAG
CGGGAGCCTGGCAGCGTTGAGCGTTCTGGAGCGGGGTTACCGAGAAAACC
TGACAGAACAAGAAGCCAAGGAGCTCGTACTAGAAGGCATCGCGGCGGGA
ATCGACAACGACTTGGGCAGCGGAAGCAACATCGACTTGTGCGTTATCAC
GGCGGAGCGAGGCCTGGAGCACCACAGGGGGGTTTGGACAGATCCAGGCC
TTGATGCCGACGGCATTGCTGCTCGTGAGCTTCCCGAAGGTTCATGTGGT
AGCGAAAATGACAACAAAATGGGGCAAGCCGACGCTCGCCTAGCACCAAG
AGGAATCGAGAGCTTGCAACAAAATCAGCGTGATGTGTCTGGTGACAGCG
AAAGTGACGGTTTCGACGTCGTGGCCGGCGGAGAGGGTGGATCGAGAGCA
TGGGTGGGAAACGTGCGTCGAAGAAACAGGGAGAAAATCGTTATAAAGGT
GGACCACGACGATGATGGGGCTCTACGTAGGTATCGTTGCAGCGCCCTCG
ACGATACGATCGAACTGCTGTGA
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