mRNA_Ecto-sp13_S_contig5852.16342.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5852.16342.1
Unique NamemRNA_Ecto-sp13_S_contig5852.16342.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig5852.16342.1 vs. uniprot
Match: Q8QND4_ESV1K (EsV-1-148 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QND4_ESV1K)

HSP 1 Score: 126 bits (316), Expect = 7.640e-32
Identity = 59/92 (64.13%), Postives = 74/92 (80.43%), Query Frame = 1 
Query:    1 DFSRISECILNDNSHMVLAFFRNHETDEESLKNMIGRNMYLGAWRNITSIFMTKTNVVSLQKINERVNLLASIARGQEMTTLFHFKTHALYY 276
            ++SR++ECIL+DNS MV+AF+R+HETDE SL+N+ G NMY   W N+  +F TK NVV+LQK NERVNLL S+ARG+ MT LFHFK  ALYY
Sbjct:  518 EYSRVAECILSDNSRMVVAFYRDHETDEGSLQNVTGLNMYSCIWHNLKCVFTTKNNVVTLQKNNERVNLLGSMARGRLMTILFHFKPRALYY 609
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5852.16342.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Q8QND4_ESV1K7.640e-3264.13EsV-1-148 n=1 Tax=Ectocarpus siliculosus virus 1 (... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5852contigEcto-sp13_S_contig5852:8478..8765 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size288
Hectar predicted targeting categoryother localisation
Exons1
Cds size288
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463812.8257477-CDS-Ecto-sp13_S_contig5852:8477..87651681463812.8257477-CDS-Ecto-sp13_S_contig5852:8477..8765Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5852 8478..8765 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5852.16342.1prot_Ecto-sp13_S_contig5852.16342.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5852 8478..8765 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5852.16342.1

>prot_Ecto-sp13_S_contig5852.16342.1 ID=prot_Ecto-sp13_S_contig5852.16342.1|Name=mRNA_Ecto-sp13_S_contig5852.16342.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=96bp
DFSRISECILNDNSHMVLAFFRNHETDEESLKNMIGRNMYLGAWRNITSI
FMTKTNVVSLQKINERVNLLASIARGQEMTTLFHFKTHALYYIIS*
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mRNA from alignment at Ecto-sp13_S_contig5852:8478..8765-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5852.16342.1 ID=mRNA_Ecto-sp13_S_contig5852.16342.1|Name=mRNA_Ecto-sp13_S_contig5852.16342.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=288bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5852:8478..8765- (Ectocarpus species13 EcNAP12_S_4_19m)
GATTTCAGTCGTATATCCGAGTGTATATTGAATGACAACAGTCACATGGT
ATTGGCATTCTTTCGAAACCATGAAACGGACGAGGAGTCTCTCAAAAATA
TGATTGGTCGAAACATGTATTTGGGTGCATGGCGCAACATAACCTCCATC
TTTATGACGAAAACCAACGTCGTAAGTTTACAGAAAATTAACGAGCGTGT
CAACCTTCTCGCTTCGATAGCACGAGGACAAGAAATGACAACTTTGTTCC
ATTTCAAAACACATGCGTTGTATTATATAATATCATAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5852:8478..8765-

>mRNA_Ecto-sp13_S_contig5852.16342.1 ID=mRNA_Ecto-sp13_S_contig5852.16342.1|Name=mRNA_Ecto-sp13_S_contig5852.16342.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=288bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5852:8478..8765- (Ectocarpus species13 EcNAP12_S_4_19m)
GATTTCAGTCGTATATCCGAGTGTATATTGAATGACAACAGTCACATGGT
ATTGGCATTCTTTCGAAACCATGAAACGGACGAGGAGTCTCTCAAAAATA
TGATTGGTCGAAACATGTATTTGGGTGCATGGCGCAACATAACCTCCATC
TTTATGACGAAAACCAACGTCGTAAGTTTACAGAAAATTAACGAGCGTGT
CAACCTTCTCGCTTCGATAGCACGAGGACAAGAAATGACAACTTTGTTCC
ATTTCAAAACACATGCGTTGTATTATATAATATCATAA
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