mRNA_Ecto-sp13_S_contig58480.16330.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig58480.16330.1
Unique NamemRNA_Ecto-sp13_S_contig58480.16330.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig58480.16330.1 vs. uniprot
Match: A0A6H5KRL4_9PHAE (Amino_oxidase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KRL4_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 4.970e-17
Identity = 43/47 (91.49%), Postives = 44/47 (93.62%), Query Frame = 1 
Query:    1 ATEAPVAAELLGEEAALGGGASPSTGRSSTCLYYAIDGPAPVSRVLL 141
            ATEAPVAAELLGEEAALGGGASPSTGRSSTCLYYAIDGPAPV   +L
Sbjct:  283 ATEAPVAAELLGEEAALGGGASPSTGRSSTCLYYAIDGPAPVGGPIL 329
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig58480.16330.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KRL4_9PHAE4.970e-1791.49Amino_oxidase domain-containing protein n=2 Tax=Ec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig58480contigEcto-sp13_S_contig58480:553..786 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score84.0
Seed ortholog evalue3.5e-14
Seed eggNOG ortholog2880.D7FN60
Model size234
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.Flavin containing amine oxidoreductase
EggNOG OGs2QSIC@2759,COG1233@1
Ec32 ortholog descriptionAmine oxidase
Ec32 orthologEc-06_008520.1
Cds size234
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463812.2292085-CDS-Ecto-sp13_S_contig58480:552..7861681463812.2292085-CDS-Ecto-sp13_S_contig58480:552..786Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig58480 553..786 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig58480.16330.1prot_Ecto-sp13_S_contig58480.16330.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig58480 553..786 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig58480.16330.1

>prot_Ecto-sp13_S_contig58480.16330.1 ID=prot_Ecto-sp13_S_contig58480.16330.1|Name=mRNA_Ecto-sp13_S_contig58480.16330.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=78bp
ATEAPVAAELLGEEAALGGGASPSTGRSSTCLYYAIDGPAPVSRVLLHVE
SCRCVGVTKRGFGFVSVGSLALVGLCSS
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mRNA from alignment at Ecto-sp13_S_contig58480:553..786-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig58480.16330.1 ID=mRNA_Ecto-sp13_S_contig58480.16330.1|Name=mRNA_Ecto-sp13_S_contig58480.16330.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=234bp|location=Sequence derived from alignment at Ecto-sp13_S_contig58480:553..786- (Ectocarpus species13 EcNAP12_S_4_19m)
GCCACCGAGGCCCCCGTCGCCGCGGAATTGCTGGGGGAGGAGGCCGCTCT
CGGCGGGGGAGCGTCGCCCAGCACCGGGAGGTCGAGCACGTGCCTGTACT
ACGCCATCGACGGACCTGCGCCGGTGAGTCGAGTCCTGTTGCACGTAGAA
TCGTGTCGATGTGTGGGGGTGACTAAACGTGGATTTGGGTTTGTTTCGGT
TGGTTCCCTGGCCTTGGTTGGCTTGTGCTCTTCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig58480:553..786-

>mRNA_Ecto-sp13_S_contig58480.16330.1 ID=mRNA_Ecto-sp13_S_contig58480.16330.1|Name=mRNA_Ecto-sp13_S_contig58480.16330.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=234bp|location=Sequence derived from alignment at Ecto-sp13_S_contig58480:553..786- (Ectocarpus species13 EcNAP12_S_4_19m)
GCCACCGAGGCCCCCGTCGCCGCGGAATTGCTGGGGGAGGAGGCCGCTCT
CGGCGGGGGAGCGTCGCCCAGCACCGGGAGGTCGAGCACGTGCCTGTACT
ACGCCATCGACGGACCTGCGCCGGTGAGTCGAGTCCTGTTGCACGTAGAA
TCGTGTCGATGTGTGGGGGTGACTAAACGTGGATTTGGGTTTGTTTCGGT
TGGTTCCCTGGCCTTGGTTGGCTTGTGCTCTTCC
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