mRNA_Ecto-sp13_S_contig58477.16329.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig58477.16329.1 vs. uniprot
Match: D8LF72_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF72_ECTSI) HSP 1 Score: 231 bits (589), Expect = 1.500e-70 Identity = 113/119 (94.96%), Postives = 115/119 (96.64%), Query Frame = 1
Query: 1 IGTGWDQNLWAPAKPLTRLDLDAALPDGRPCLLYRRCWHSAVVNTAALRAADIDPNKPCSIGNDPPSAGGVGAEGEQEEKSGASDGVEVDDAGRPTGLFREGSMRLVETAITAASFEIR 357
IGTGWDQNLWAP KPLTRLDLDAALPDGRPCLLYRRCWH+AVVNTAALRAADIDPNKP S+GNDPPSA GVGAEGEQEEKSGA DGVEVDDAGRPTGLFREGSMRLVETAITAASFEIR
Sbjct: 108 IGTGWDQNLWAPVKPLTRLDLDAALPDGRPCLLYRRCWHAAVVNTAALRAADIDPNKPWSLGNDPPSAAGVGAEGEQEEKSGAIDGVEVDDAGRPTGLFREGSMRLVETAITAASFEIR 226
BLAST of mRNA_Ecto-sp13_S_contig58477.16329.1 vs. uniprot
Match: A0A271J415_9BACT (Amidohydrolase n=1 Tax=Rubrivirga marina TaxID=1196024 RepID=A0A271J415_9BACT) HSP 1 Score: 68.2 bits (165), Expect = 6.130e-11 Identity = 53/115 (46.09%), Postives = 60/115 (52.17%), Query Frame = 1
Query: 1 IGTGWDQNLWAP--AKPLTRLDLDAALPDGRPCLLYRRCWHSAVVNTAALRAADIDPNKPCSIGNDPPSAGGVGAEGEQEEKSGASDGVEVDDAGRPTGLFREGSMRLVETAITA 339
+G GWDQN W A P TR DLDAA PD RP L R H+ NTAALRAA IDP+ P P+A GA V DD GRPTG+F + + LV AI A
Sbjct: 124 MGRGWDQNDWGGDGAFP-TRQDLDAAFPD-RPVWLGRVDGHAGWANTAALRAAGIDPDAPA------PAAPEGGA-------------VIRDDQGRPTGVFVDAAEALVANAIPA 217
BLAST of mRNA_Ecto-sp13_S_contig58477.16329.1 vs. uniprot
Match: A0A271JB13_9BACT (Amidohydrolase n=2 Tax=Bacteroidetes/Chlorobi group TaxID=68336 RepID=A0A271JB13_9BACT) HSP 1 Score: 67.4 bits (163), Expect = 1.140e-10 Identity = 50/112 (44.64%), Postives = 58/112 (51.79%), Query Frame = 1
Query: 4 GTGWDQNLWAP--AKPLTRLDLDAALPDGRPCLLYRRCWHSAVVNTAALRAADIDPNKPCSIGNDPPSAGGVGAEGEQEEKSGASDGVEVDDAGRPTGLFREGSMRLVETAI 333
G GWDQN W A P TR DLDAA PD RP L R H+ NTAALRAA IDP+ P + + GG V VDD GRPTG+F + + LV A+
Sbjct: 127 GRGWDQNDWGGDGAFP-TRADLDAAFPD-RPVWLGRVDGHAGWANTAALRAAGIDPDAPAPMAPE----GGA---------------VLVDDQGRPTGVFVDAAEMLVAEAM 217
BLAST of mRNA_Ecto-sp13_S_contig58477.16329.1 vs. uniprot
Match: UPI00158ECC64 (amidohydrolase n=1 Tax=Bacillus sp. Marseille-Q1617 TaxID=2736887 RepID=UPI00158ECC64) HSP 1 Score: 66.2 bits (160), Expect = 2.880e-10 Identity = 43/115 (37.39%), Postives = 63/115 (54.78%), Query Frame = 1
Query: 1 IGTGWDQNLWAPAKPLTRLDLDAALPDGRPCLLYRRCWHSAVVNTAALRAADIDPNKPCSIGNDPPSAGGVGAEGEQEEKSGASDGVEVDDAGRPTGLFREGSMRLVETAITAAS 345
G GW++NLWA A+ +T+ +LDAA+P+ P LL R C H+ VVN+ AL+ A+ID + P DP AGG+ +E DD G GL ++ + L+ A+ S
Sbjct: 106 FGEGWNENLWAGAEVITKNELDAAVPN-HPVLLKRICRHAMVVNSLALKQANIDESTP-----DP--AGGL---------------IEKDDEGNLNGLLKDKAQDLMVEALPPIS 197
BLAST of mRNA_Ecto-sp13_S_contig58477.16329.1 vs. uniprot
Match: A0A6G8YHL0_9GAMM (Amidohydrolase n=4 Tax=Xanthomonadaceae TaxID=32033 RepID=A0A6G8YHL0_9GAMM) HSP 1 Score: 64.3 bits (155), Expect = 1.370e-9 Identity = 45/119 (37.82%), Postives = 59/119 (49.58%), Query Frame = 1
Query: 1 IGTGWDQNLWAPAKPLTRLDLDAALPDGRPCLLYRRCWHSAVVNTAALRAADIDPNKPCSIGNDPPSAGGVGAEGEQEEKSGASDGVEVDDAGRPTGLFREGSMRLVETAITAASFEIR 357
+G GWDQN WA + + DLDAA PD RP L R H+ N+AALRA P + G P+ G + E D AGRPTG+F + +M L++ AI A + R
Sbjct: 127 LGNGWDQNRWADTRFPSAADLDAAFPD-RPVWLGRVDGHAGWGNSAALRALAAVPGQRTLQGRWQPAGGRI----------------ERDAAGRPTGVFVDEAMGLMQAAIPAPTAAAR 228
BLAST of mRNA_Ecto-sp13_S_contig58477.16329.1 vs. uniprot
Match: UPI001391D6DE (amidohydrolase n=1 Tax=Pseudoxanthomonas jiangsuensis TaxID=619688 RepID=UPI001391D6DE) HSP 1 Score: 64.3 bits (155), Expect = 1.380e-9 Identity = 46/114 (40.35%), Postives = 54/114 (47.37%), Query Frame = 1
Query: 4 GTGWDQNLWAPAKPLTRLDLDAALPDGRPCLLYRRCWHSAVVNTAALRAADIDPNKPCSIGNDPPSAGGVGAEGEQEEKSGASDGVEVDDAGRPTGLFREGSMRLVETAITAAS 345
G GWDQN W T DLDAA PD RP L R H+ N+AALRAA G+ P G + EG GRPTG+F + +MRLVE A+ A S
Sbjct: 145 GWGWDQNRWPEQTFPTAADLDAAFPD-RPVWLLRIDGHAGWANSAALRAAATAEGARALEGDWQPDGGRIVREG-----------------GRPTGVFVDAAMRLVERAMPARS 240
BLAST of mRNA_Ecto-sp13_S_contig58477.16329.1 vs. uniprot
Match: A0A7C6HDA8_9FIRM (Amidohydrolase n=1 Tax=Firmicutes bacterium TaxID=1879010 RepID=A0A7C6HDA8_9FIRM) HSP 1 Score: 63.5 bits (153), Expect = 2.540e-9 Identity = 45/118 (38.14%), Postives = 58/118 (49.15%), Query Frame = 1
Query: 1 IGTGWDQNLWAPAKPLTRLDLDAALPDGRPCLLYRRCWHSAVVNTAALRAADIDPNKPCSIGNDPPSAGGVGAEGEQEEKSGASDGVEVDDAGRPTGLFREGSMRLVETAITAASFEI 354
+G GWDQ ++A + LTR DLD A GRP L R C H AV +T AL A I + DPP GG ++ D G PTG+ RE ++ LV + I AS E+
Sbjct: 110 LGRGWDQEVFAEKRYLTRKDLDEA-SGGRPVFLTRACGHIAVASTRALEIAGITRDA-----QDPP--GGA---------------IDRDAYGDPTGILRESALELVRSHIPPASREL 204
BLAST of mRNA_Ecto-sp13_S_contig58477.16329.1 vs. uniprot
Match: A0A0V8HNK6_9BACI (Amidohydro_3 domain-containing protein n=3 Tax=Rossellomorea TaxID=2837508 RepID=A0A0V8HNK6_9BACI) HSP 1 Score: 62.0 bits (149), Expect = 8.780e-9 Identity = 41/115 (35.65%), Postives = 60/115 (52.17%), Query Frame = 1
Query: 1 IGTGWDQNLWAPAKPLTRLDLDAALPDGRPCLLYRRCWHSAVVNTAALRAADIDPNKPCSIGNDPPSAGGVGAEGEQEEKSGASDGVEVDDAGRPTGLFREGSMRLVETAITAAS 345
G GW++NLWA A+ +T+ +LD A+P+ P LL R C H+ VVN+ AL+ A+ID P DP GG+ +E DD G GL ++ + L+ A+ S
Sbjct: 106 FGEGWNENLWAGAEVITKKELDDAVPN-HPVLLKRICRHAMVVNSLALKEANIDEETP-----DP--EGGL---------------IEKDDDGSLNGLLKDKAQDLMTAALPPIS 197
BLAST of mRNA_Ecto-sp13_S_contig58477.16329.1 vs. uniprot
Match: A0A800J5Q3_9BACT (Amidohydrolase n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A800J5Q3_9BACT) HSP 1 Score: 61.2 bits (147), Expect = 1.650e-8 Identity = 49/122 (40.16%), Postives = 62/122 (50.82%), Query Frame = 1
Query: 4 GTGWDQNLWAP----AKPL-TRLDLDAALPDGRPCLLYRRCWHSAVVNTAALRAADIDPNKPCSIGNDPPSAGGVGAEGEQEEKSGASDGVEVDDAGRPTGLFREGSMRLVETAITAASFEI 354
G GWDQN W + P TR DLDAA PD RP L R H+ VN+AALRAA +DP+ +A EG Q + D GRPTG+ + + LV +AI AA+ E+
Sbjct: 133 GRGWDQNDWEAQADGSHPFPTRADLDAAFPD-RPVALGRIDGHALWVNSAALRAAGLDPD----------AAAPADPEGGQ---------ILRDADGRPTGVLVDAAETLVTSAIPAATDEV 234
BLAST of mRNA_Ecto-sp13_S_contig58477.16329.1 vs. uniprot
Match: A0A3M1DDN7_9CHLR (Amidohydrolase (Fragment) n=1 Tax=Thermoflexia bacterium TaxID=2420334 RepID=A0A3M1DDN7_9CHLR) HSP 1 Score: 59.7 bits (143), Expect = 2.810e-8 Identity = 41/111 (36.94%), Postives = 55/111 (49.55%), Query Frame = 1
Query: 1 IGTGWDQNLWAPAKPLTRLDLDAALPDGRPCLLYRRCWHSAVVNTAALRAADIDPNKPCSIGNDPPSAGGVGAEGEQEEKSGASDGVEVDDAGRPTGLFREGSMRLVETAI 333
+G GW+Q W + T DLD+ P+ P LL R H+ V +T A+ A I P+ P DPP GG + D +GRPTGLF E +MRLV+ A+
Sbjct: 108 LGRGWNQEEWPDRRFPTAADLDSIAPE-HPVLLVARSGHALVASTRAMERAGIRPDTP-----DPP--GGH---------------IVRDASGRPTGLFLEDAMRLVQDAV 195 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig58477.16329.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig58477.16329.1 >prot_Ecto-sp13_S_contig58477.16329.1 ID=prot_Ecto-sp13_S_contig58477.16329.1|Name=mRNA_Ecto-sp13_S_contig58477.16329.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=119bp IGTGWDQNLWAPAKPLTRLDLDAALPDGRPCLLYRRCWHSAVVNTAALRAback to top mRNA from alignment at Ecto-sp13_S_contig58477:489..845- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig58477.16329.1 ID=mRNA_Ecto-sp13_S_contig58477.16329.1|Name=mRNA_Ecto-sp13_S_contig58477.16329.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=357bp|location=Sequence derived from alignment at Ecto-sp13_S_contig58477:489..845- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig58477:489..845- >mRNA_Ecto-sp13_S_contig58477.16329.1 ID=mRNA_Ecto-sp13_S_contig58477.16329.1|Name=mRNA_Ecto-sp13_S_contig58477.16329.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=357bp|location=Sequence derived from alignment at Ecto-sp13_S_contig58477:489..845- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |