mRNA_Ecto-sp13_S_contig5840.16317.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5840.16317.1
Unique NamemRNA_Ecto-sp13_S_contig5840.16317.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig5840.16317.1 vs. uniprot
Match: A0A6H5KC36_9PHAE (Protein kinase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KC36_9PHAE)

HSP 1 Score: 696 bits (1796), Expect = 9.870e-237
Identity = 453/574 (78.92%), Postives = 459/574 (79.97%), Query Frame = 1 
Query:   49 MPGDRGRATHHATPSCGSSGGIALRQSKGASRGMSHVNWKLGEQWDGISEAGXXXXXXXXXXXXXEGFLPLLRQLSDLSDRSVDEEILLRQGKLERQQLGASPASAXXXXXXXXXXXXXXXXXXXXXXXXXXASGSVAAGHXXXXXXXXXXXADHGGTTDGVERVRLDAERQILLTMLLAHMCSEHDATPRTFVEQVLVLYEAKVLDSIQFLFDLGFVPPVALPSYRTPPDRAAVVEAVRRQINRGGQQGDTLLLGAWPSGPPARAAAAAVSEASGGGDGVDRGRRSATPLGLRVLGTSRYWRDFDEEGLIARGSFGDVYRTRHRLDGTRYAIKKVVFRGTGVSNPRAQAVMREVQCLAQLDHKNIVRYHTSWLESSWVENGMGYPHAGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASADVSLRDRMDALVPAHMQSQLIKGLETMVRSGNSASDSGXXXXXXAESDGGFDGDAEFGATRRGPPRGGRHHNQGAAAGTXXXXXXXXXXXXGGLLWGSRRGDRRSSMSPQVRSPKHLIVPVGGGRDRGFSRWSAEDVESETSRWSEASSYA 1770
            MPGDRGRATH ATPSCGSS G AL QSKG +RGMSH                                                       GKLERQQLGAS  SAXXXXXXXXXXXXXXXXXXXXXXXXXX SGSVAAGH    XXXXXX ADHGGT DGVERVRLDAERQILLTMLLAHMCSEHDATPRTFVEQVLVLYEAKVLDSIQFLFDLGFVPPVALPSYRTPPDRAAVVEAVRRQINR GQQG+ LLLGAWPSGPPARAA           DGVDR RRSATPLGLRVLGTSRY RDFDEEGLIARGSFGDVYRTRHRLDGTRYAIKKVVFRGTG+SNPRAQAVMREVQCLAQLDHKN+VRYHTSWLESSWVE GMGYPH G   XXXXXXXXXXXXXXXXXXXXXX      ASADVSLRDRMDALVPAHMQ QLIKGLETMVRSGNSAS   XXXXXXAE+DGGFDGD EFG T RGPPRGGRHHNQGAAAGT            GGLLWGSRRGDRR SMSPQVRSPKHLIVPVGGGRDRGFSRWSAEDVESETS+WSEASSYA
Sbjct:    1 MPGDRGRATHLATPSCGSSRGAALWQSKGPARGMSH-------------------------------------------------------GKLERQQLGAS--SAXXXXXXXXXXXXXXXXXXXXXXXXXXXSGSVAAGHARGAXXXXXXGADHGGTADGVERVRLDAERQILLTMLLAHMCSEHDATPRTFVEQVLVLYEAKVLDSIQFLFDLGFVPPVALPSYRTPPDRAAVVEAVRRQINRRGQQGEPLLLGAWPSGPPARAAXXXXXXXXXX-DGVDRDRRSATPLGLRVLGTSRYLRDFDEEGLIARGSFGDVYRTRHRLDGTRYAIKKVVFRGTGMSNPRAQAVMREVQCLAQLDHKNVVRYHTSWLESSWVEKGMGYPHGG---XXXXXXXXXXXXXXXXXXXXXXGAVGAGASADVSLRDRMDALVPAHMQPQLIKGLETMVRSGNSASGXXXXXXXXAENDGGFDGDEEFGTTTRGPPRGGRHHNQGAAAGTGFDSCAGGYGGRGGLLWGSRRGDRRGSMSPQVRSPKHLIVPVGGGRDRGFSRWSAEDVESETSKWSEASSYA 513
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BLAST of mRNA_Ecto-sp13_S_contig5840.16317.1 vs. uniprot
Match: A0A836C8C8_9STRA (Protein kinase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8C8_9STRA)

HSP 1 Score: 159 bits (403), Expect = 6.220e-41
Identity = 100/224 (44.64%), Postives = 123/224 (54.91%), Query Frame = 1 
Query:  580 LLAHMCSEHDATPRTFVEQVLVLYEAKVLDSIQFLFDLGFV--PPV--------------------ALPSYRTPPDRAAVVEAVRRQINRGGQQGDTLLLGAWPSGPPARAAAAAVSEASGGGDGVDRGRRSATPLGLRVLGTSRYWRDFDEEGLIARGSFGDVYRTRHRLDGTRYAIKKVVFRGTGVSNPRAQAVMREVQCLAQLDHKNIVRYHTSWLESSWV 1185
            LLA +CS++DATP TF+ QVL LYE KVLDSI FL+++GFV  PP                     ALP      DRAA   AVR  I+ G Q+   L  GA                                     +   SRY +DF+E GL+A G+FGDV+RTRHRLDG  YAIKKV FRG  + +P A+AV+REV  L+Q++H N VRYHT+WLESSWV
Sbjct:   41 LLAQVCSQYDATPSTFISQVLRLYELKVLDSISFLYEMGFVRRPPXXXXXXXXXXXXXXXXXXXXSALPVA----DRAAETAAVR--IHLGNQEPIPLAGGAXXX---------------------------XXXXXXXIGAPSRYRQDFEEIGLLAAGAFGDVFRTRHRLDGAEYAIKKVAFRGERLDSPLARAVLREVNVLSQIEHPNCVRYHTAWLESSWV 231
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BLAST of mRNA_Ecto-sp13_S_contig5840.16317.1 vs. uniprot
Match: A0A6A5AFL3_9STRA (Protein kinase domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AFL3_9STRA)

HSP 1 Score: 135 bits (339), Expect = 2.930e-31
Identity = 82/229 (35.81%), Postives = 114/229 (49.78%), Query Frame = 1 
Query:  520 TTDGVERVRLDAERQILLTMLLAHMCSEHDATPRTFVEQVLVLYEAKVLDSIQFLFDLGFVPPVALPSYRTPPDRAAVVEAVRRQINRGGQQGDTLLLGAWPSGPPARAAAAAVSEASGGGDGVDRGRRSATPLGLRV----LGTSRYWRDFDEEGLIARGSFGDVYRTRHRLDGTRYAIKKVVFRGTGVSNPRAQAVMREVQCLAQLDHKNIVRYHTSWLESSWVENG 1194
            TT   + + +  E+Q+ + +LLA +C+ +DATP+TFV  VL L+   ++DSI FL DLG +P   L +  +P          R              L  W                             A P GL +    L  SRY RDFDE  L+ RG FG V++ RH+LDG  YAIK+V F   G  +P  Q+V+REV CLA+ DH N+ RY+ +WLE +W+  G
Sbjct:   74 TTPDTDSIPVLCEKQVTIIVLLARVCTVYDATPKTFVANVLRLHRLGIIDSIAFLADLGLLPTSPLAASSSP----------RHDF-----------LEPW----------------------------DADPRGLHLIPQTLNMSRYARDFDELCLLGRGGFGHVFKARHKLDGLCYAIKQVHFLNKGYQSPLVQSVLREVHCLARCDHPNVNRYYGAWLEPTWIPMG 253
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BLAST of mRNA_Ecto-sp13_S_contig5840.16317.1 vs. uniprot
Match: A0A3R8CPM8_9STRA (Protein kinase domain-containing protein n=8 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R8CPM8_9STRA)

HSP 1 Score: 135 bits (339), Expect = 1.540e-30
Identity = 82/229 (35.81%), Postives = 114/229 (49.78%), Query Frame = 1 
Query:  520 TTDGVERVRLDAERQILLTMLLAHMCSEHDATPRTFVEQVLVLYEAKVLDSIQFLFDLGFVPPVALPSYRTPPDRAAVVEAVRRQINRGGQQGDTLLLGAWPSGPPARAAAAAVSEASGGGDGVDRGRRSATPLGLRV----LGTSRYWRDFDEEGLIARGSFGDVYRTRHRLDGTRYAIKKVVFRGTGVSNPRAQAVMREVQCLAQLDHKNIVRYHTSWLESSWVENG 1194
            TT   + + +  E+Q+ + +LLA +C+ +DATP+TFV  VL L+   ++DSI FL DLG +P   L +  +P          R              L  W                             A P GL +    L  SRY RDFDE  L+ RG FG V++ RH+LDG  YAIK+V F   G  +P  Q+V+REV CLA+ DH N+ RY+ +WLE +W+  G
Sbjct:   47 TTPDTDSIPVLCEKQVTIIVLLARVCTVYDATPKTFVANVLRLHRLGIIDSIAFLADLGLLPTSPLAASSSP----------RHDF-----------LEPW----------------------------DADPRGLHLIPQTLNMSRYARDFDELCLLGRGGFGHVFKARHKLDGLCYAIKQVHFLNKGYQSPLVQSVLREVHCLARCDHPNVNRYYGAWLEPTWIPMG 226
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BLAST of mRNA_Ecto-sp13_S_contig5840.16317.1 vs. uniprot
Match: A0A024TET7_9STRA (PEK protein kinase n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TET7_9STRA)

HSP 1 Score: 136 bits (343), Expect = 3.560e-30
Identity = 84/219 (38.36%), Postives = 112/219 (51.14%), Query Frame = 1 
Query:  556 ERQILLTMLLAHMCSEHDATPRTFVEQVLVLYEAKVLDSIQFLFDLGFVPPVALPSYRTPPDRAAVVEAVRRQINRGGQQGDTLLLGAWPSGPPARAAAAAVSEASGGGDGVDRGRRSATPLGLRVLGTSRYWRDFDEEGLIARGSFGDVYRTRHRLDGTRYAIKKVVFRGTGVSNPRAQAVMREVQCLAQLDHKNIVRYHTSWLESSWVENGMGYPHA 1212
            E+Q+ + +LLA +C+ +DATP+TFV  VL L+   ++DSI FL DLG +P   L S   P D                       +  W S P                    RG      L  + L  SRY RDFDE  L+ +G FG V++ RH+LDG  YAIK+V F   G  +P  Q V+REV CLA+ DH N+ RY+++WLE +WV   MG P A
Sbjct:   85 EKQVTIIVLLARVCTVYDATPKTFVANVLRLHRLGIIDSIAFLADLGLLPTSPLASSPRPTD----------------------FIEPWDSDP--------------------RGLH----LIPQTLNMSRYARDFDEVCLLGQGGFGQVFKARHKLDGICYAIKQVNFVNKGFQSPLVQNVLREVHCLARCDHPNVNRYYSAWLEPTWVP--MGQPSA 255
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BLAST of mRNA_Ecto-sp13_S_contig5840.16317.1 vs. uniprot
Match: A0A1V9Z444_9STRA (Heme regulated eukaryotic translation initiation factor-like protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z444_9STRA)

HSP 1 Score: 136 bits (343), Expect = 3.880e-30
Identity = 88/237 (37.13%), Postives = 120/237 (50.63%), Query Frame = 1 
Query:  505 ADHGGTTDGVERVRLDAERQILLTMLLAHMCSEHDATPRTFVEQVLVLYEAKVLDSIQFLFDLGFVPPVALPSYRTPPDRAAVVEAVRR-QINRGGQQGDTLLLGAWPSGPPARAAAAAVSEASGGGDGVDRGRRSATPLGLRVLGTSRYWRDFDEEGLIARGSFGDVYRTRHRLDGTRYAIKKVVFRGTGVSNPRAQAVMREVQCLAQLDHKNIVRYHTSWLESSWVENGMGYPHA 1212
            +D+ G     E + +  ERQ+ + +LLA +CS +DATP+TFV  VL L+   VL+SI FL DLG +   A  S R         +A+ +  +++GG  G  L                                    P  L V   SRY RDFDE  LI +G FG V+  RH+LDG  YAIK+V F   G  +P  Q V+REV CLA+ DH N+ RY ++WLE +WV   +  P+A
Sbjct:   75 SDNFGDKKTPEEIPVLDERQVTIIVLLARVCSVYDATPKTFVANVLRLHRMGVLESIAFLSDLGLLASSAATSPRN-------TDAIEQWDLDKGGVGGGMLGF----------------------------------PQSLNV---SRYARDFDEIRLIGQGGFGQVFMARHKLDGICYAIKQVRFFNKGFQSPLVQNVLREVHCLARCDHPNVNRYFSAWLEPTWVPMNLYTPYA 267
[Close]
BLAST of mRNA_Ecto-sp13_S_contig5840.16317.1 vs. uniprot
Match: W4FQF5_9STRA (PEK protein kinase n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FQF5_9STRA)

HSP 1 Score: 135 bits (339), Expect = 1.470e-29
Identity = 82/229 (35.81%), Postives = 114/229 (49.78%), Query Frame = 1 
Query:  520 TTDGVERVRLDAERQILLTMLLAHMCSEHDATPRTFVEQVLVLYEAKVLDSIQFLFDLGFVPPVALPSYRTPPDRAAVVEAVRRQINRGGQQGDTLLLGAWPSGPPARAAAAAVSEASGGGDGVDRGRRSATPLGLRV----LGTSRYWRDFDEEGLIARGSFGDVYRTRHRLDGTRYAIKKVVFRGTGVSNPRAQAVMREVQCLAQLDHKNIVRYHTSWLESSWVENG 1194
            TT   + + +  E+Q+ + +LLA +C+ +DATP+TFV  VL L+   ++DSI FL DLG +P   L +  +P          R              L  W                             A P GL +    L  SRY RDFDE  L+ RG FG V++ RH+LDG  YAIK+V F   G  +P  Q+V+REV CLA+ DH N+ RY+ +WLE +W+  G
Sbjct:  108 TTPDTDSIPVLCEKQVTIIVLLARVCTVYDATPKTFVANVLRLHRLGIIDSIAFLADLGLLPTSPLAASSSP----------RHDF-----------LEPW----------------------------DADPRGLHLIPQTLNMSRYARDFDELCLLGRGGFGHVFKARHKLDGLCYAIKQVHFLNKGYQSPLVQSVLREVHCLARCDHPNVNRYYGAWLEPTWIPMG 287
[Close]
BLAST of mRNA_Ecto-sp13_S_contig5840.16317.1 vs. uniprot
Match: A0A067C1X7_SAPPC (PEK/PEK protein kinase n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067C1X7_SAPPC)

HSP 1 Score: 134 bits (338), Expect = 1.660e-29
Identity = 83/210 (39.52%), Postives = 109/210 (51.90%), Query Frame = 1 
Query:  556 ERQILLTMLLAHMCSEHDATPRTFVEQVLVLYEAKVLDSIQFLFDLGFVPPVALPSYRTPPDRAAVVEAVRRQINRGGQQGDTLLLGAWPSGPPARAAAAAVSEASGGGDGVDRGRRSATPLGLRVLGTSRYWRDFDEEGLIARGSFGDVYRTRHRLDGTRYAIKKVVFRGTGVSNPRAQAVMREVQCLAQLDHKNIVRYHTSWLESSWV 1185
            ERQ+ + +LLA +CS +DATP+TFV  VL L+   VL+SI FL DLG +      +  T P +   +E  +   ++GG  G  L                                    P  L V   SRY RDFDE  LI +G FG VY  RH+LDG  YAIK+V F   G  +P  Q V+REV CLA+ DH N+ RY+++WLE +WV
Sbjct:   94 ERQVTIIVLLARVCSVYDATPKTFVANVLRLHRMGVLESIAFLSDLGLL------ASTTSPRKMDAIE--QWDADKGGVNGGILGF----------------------------------PQSLNV---SRYARDFDEVRLIGQGGFGQVYMARHKLDGICYAIKQVRFFNKGFQSPLVQNVLREVHCLARCDHPNVNRYYSAWLEPTWV 258
[Close]
BLAST of mRNA_Ecto-sp13_S_contig5840.16317.1 vs. uniprot
Match: A0A6G0WH83_9STRA (Protein kinase domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WH83_9STRA)

HSP 1 Score: 130 bits (328), Expect = 2.380e-28
Identity = 79/222 (35.59%), Postives = 112/222 (50.45%), Query Frame = 1 
Query:  535 ERVRLDAERQILLTMLLAHMCSEHDATPRTFVEQVLVLYEAKVLDSIQFLFDLGFVP--PVALPSYRTPPDRAAVVEAVRRQINRGGQQGDTLLLGAWPSGPPARAAAAAVSEASGGGDGVDRGRRSATPLGLRVLGTSRYWRDFDEEGLIARGSFGDVYRTRHRLDGTRYAIKKVVFRGTGVSNPRAQAVMREVQCLAQLDHKNIVRYHTSWLESSWVENG 1194
            E + +  ERQ+ + +LLA +C+ +DATP+TFV  VL L+   ++DSI FL DLG +P  PV+ P                       +  D + L  W                            ++  +  + L  SRY RDFDE GL+ +G FG V++ RH+LDG  YAIK+V F   G  +P  Q V+REV CLA+ DH N+ RY  +WLE +W+  G
Sbjct:   71 EDIPVLCERQVTIIVLLARVCTVYDATPKTFVANVLRLHRLGIIDSIAFLSDLGLLPTSPVSSP-----------------------RNSDYIEL--WD-------------------------HDNSLDIFPQALNMSRYARDFDEMGLLGQGGFGQVFKARHKLDGICYAIKQVQFLNKGFQSPLVQNVLREVHCLARCDHPNVNRYFGAWLEPTWMPLG 242
[Close]
BLAST of mRNA_Ecto-sp13_S_contig5840.16317.1 vs. uniprot
Match: A0A1W0A2Y0_9STRA (Heme regulated eukaryotic translation initiation factor n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A2Y0_9STRA)

HSP 1 Score: 130 bits (328), Expect = 2.780e-28
Identity = 83/210 (39.52%), Postives = 109/210 (51.90%), Query Frame = 1 
Query:  556 ERQILLTMLLAHMCSEHDATPRTFVEQVLVLYEAKVLDSIQFLFDLGFVPPVALPSYRTPPDRAAVVEAVRRQINRGGQQGDTLLLGAWPSGPPARAAAAAVSEASGGGDGVDRGRRSATPLGLRVLGTSRYWRDFDEEGLIARGSFGDVYRTRHRLDGTRYAIKKVVFRGTGVSNPRAQAVMREVQCLAQLDHKNIVRYHTSWLESSWV 1185
            ERQ+ + +LLA +CS +DATP+TFV  VL L+   VLDSI FL DLG +   +  S R        ++A+ +     G  G   LLG                                 P  L V   SRY RDF+E  LI +G FG V+  RH+LDG  YAIK+V F   G  +P  Q V+REV CLA+ DH N+ RY+++WLE +WV
Sbjct:   77 ERQVTIIVLLARVCSVYDATPKTFVANVLRLHRMGVLDSIAFLTDLGLLTSSSSNSPRN-------IDAIEQWEQEKGT-GTNGLLG--------------------------------FPQSLNV---SRYARDFEEIRLIGQGGFGQVFMARHKLDGICYAIKQVRFFNKGYQSPLVQNVLREVHCLARCDHPNVNRYYSAWLEPTWV 243
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5840.16317.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KC36_9PHAE9.870e-23778.92Protein kinase domain-containing protein n=2 Tax=E... [more]
A0A836C8C8_9STRA6.220e-4144.64Protein kinase domain-containing protein n=1 Tax=T... [more]
A0A6A5AFL3_9STRA2.930e-3135.81Protein kinase domain-containing protein n=1 Tax=A... [more]
A0A3R8CPM8_9STRA1.540e-3035.81Protein kinase domain-containing protein n=8 Tax=A... [more]
A0A024TET7_9STRA3.560e-3038.36PEK protein kinase n=1 Tax=Aphanomyces invadans Ta... [more]
A0A1V9Z444_9STRA3.880e-3037.13Heme regulated eukaryotic translation initiation f... [more]
W4FQF5_9STRA1.470e-2935.81PEK protein kinase n=3 Tax=Aphanomyces astaci TaxI... [more]
A0A067C1X7_SAPPC1.660e-2939.52PEK/PEK protein kinase n=2 Tax=Saprolegnia TaxID=4... [more]
A0A6G0WH83_9STRA2.380e-2835.59Protein kinase domain-containing protein n=1 Tax=A... [more]
A0A1W0A2Y0_9STRA2.780e-2839.52Heme regulated eukaryotic translation initiation f... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5840contigEcto-sp13_S_contig5840:5022..8778 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score659.8
Seed ortholog evalue1.2e-186
Seed eggNOG ortholog2880.D8LBS3
Model size1770
KEGG koko:K08860,ko:K16194,ko:K16196
KEGG Pathwayko04137,ko04138,ko04140,ko04141,ko04210,ko04214,ko04932,ko05010,ko05160,ko05162,ko05164,ko05168,ko05169,map04137,map04138,map04140,map04141,map04210,map04214,map04932,map05010,map05160,map05162,map05164,map05168,map05169
Hectar predicted targeting categorysignal peptide
Exons5
EggNOG free text desc.eukaryotic translation initiation factor 2alpha kinase activity
EggNOG OGsCOG0124@1,KOG1035@2759
EC2.7.11.1
Cds size1770
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463811.001367-CDS-Ecto-sp13_S_contig5840:5021..52201681463811.001367-CDS-Ecto-sp13_S_contig5840:5021..5220Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5840 5022..5220 +
1681463811.0147789-CDS-Ecto-sp13_S_contig5840:5980..64171681463811.0147789-CDS-Ecto-sp13_S_contig5840:5980..6417Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5840 5981..6417 +
1681463811.0325317-CDS-Ecto-sp13_S_contig5840:7116..74271681463811.0325317-CDS-Ecto-sp13_S_contig5840:7116..7427Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5840 7117..7427 +
1681463811.0451713-CDS-Ecto-sp13_S_contig5840:7710..78001681463811.0451713-CDS-Ecto-sp13_S_contig5840:7710..7800Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5840 7711..7800 +
1681463811.0564377-CDS-Ecto-sp13_S_contig5840:8045..87781681463811.0564377-CDS-Ecto-sp13_S_contig5840:8045..8778Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5840 8046..8778 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5840.16317.1prot_Ecto-sp13_S_contig5840.16317.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5840 5022..8778 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5840.16317.1

>prot_Ecto-sp13_S_contig5840.16317.1 ID=prot_Ecto-sp13_S_contig5840.16317.1|Name=mRNA_Ecto-sp13_S_contig5840.16317.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=590bp
QVCLIFVVAFVRGSAWMPGDRGRATHHATPSCGSSGGIALRQSKGASRGM
SHVNWKLGEQWDGISEAGGGRQQQKQQQQHHEGFLPLLRQLSDLSDRSVD
EEILLRQGKLERQQLGASPASAAAAGAGGGGKSAAVAAAAAAAAAAAAAS
GSVAAGHAPGASAAASSGADHGGTTDGVERVRLDAERQILLTMLLAHMCS
EHDATPRTFVEQVLVLYEAKVLDSIQFLFDLGFVPPVALPSYRTPPDRAA
VVEAVRRQINRGGQQGDTLLLGAWPSGPPARAAAAAVSEASGGGDGVDRG
RRSATPLGLRVLGTSRYWRDFDEEGLIARGSFGDVYRTRHRLDGTRYAIK
KVVFRGTGVSNPRAQAVMREVQCLAQLDHKNIVRYHTSWLESSWVENGMG
YPHAGGGGGGDPNVAATAAAATAAAAAAGAGAVGLGASADVSLRDRMDAL
VPAHMQSQLIKGLETMVRSGNSASDSGSGWGWGAESDGGFDGDAEFGATR
RGPPRGGRHHNQGAAAGTGASAGAGGHGRGGGLLWGSRRGDRRSSMSPQV
RSPKHLIVPVGGGRDRGFSRWSAEDVESETSRWSEASSYA
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mRNA from alignment at Ecto-sp13_S_contig5840:5022..8778+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5840.16317.1 ID=mRNA_Ecto-sp13_S_contig5840.16317.1|Name=mRNA_Ecto-sp13_S_contig5840.16317.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3757bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5840:5022..8778+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTGTGCCTGATATTCGTTGTTGCTTTCGTCCGTGGGTCGGCCTGGAT
GCCAGGGGATCGCGGGCGAGCGACGCACCACGCAACGCCGTCGTGCGGCA
GCAGTGGAGGCATCGCTCTGCGGCAAAGCAAGGGCGCGTCGAGAGGAATG
TCGCACGTAAATTGGAAGCTGGGTGAACAATGGGATGGTATCAGCGAAGG
TGGGCAAGCAGCCGATGTCTTCTTTTTTCCGTCCTAGAGAGAAGGCGGGG
GGGGGTAGAGTTGAGGGTCTCTCCGTCGAAGTGTTCACGTGCCGGGGAAG
GAGGTTGAGTTTGCCTTGGCGCACTGCGTTACCTTGACACCCTCCCACTG
CTGTTCGTCGTTCTCTAGTCGCATCCGCTGCGTGCTAGCTTCGTTCTTTG
CTCCACTGAAAATCTGGACCAAATCCGACACGCGTCCTGTCGTGTTTGGC
CTGGCGAGGGCGTTGTCGCGATGCCTCTGTTGCTGTTTGCACTCGAACGA
GTGTTGCCAATTTCGCAACGCCGCACCCTGGTATGTGTAAAGCATTCTCC
CCTTCGCTCTTGGCGAATTCTCCATGGCTGCGCTCTCCCGTTGACGCTGC
CGCGTGCGAGGCGTCAATTGTGTCAAAAGCTCGACAAAAATATCCAAAAC
AAGTTGGTTTGCCCTGGGTAAGAACAACATGAACGCCGCTTCTTCTCTCC
AACCCAGTGAAAAATGGGACATCATCCCCCACACCATTCGCGCAATTTTT
TTTCCGCCCGTTCCTCATCCTTCGCACTCTCCCAACTCCCAACCCATCCA
TGGAAGTCGCGCACATCACCCGTGGCGTGAAGCTCTTGTCCTCCCCTCCT
GCTTTCCCCCGCTCGCCTCCAATCTCCTCGTCGATGCCCCACGTGATGGG
GTGACGAAAAATATCCGTTGCGCGTTGTGTCCTCTTGATGCTCTTGTCAT
GACAAAAAGCAGGAGGTGGAAGGCAGCAGCAAAAGCAGCAGCAGCAGCAT
CATGAAGGGTTTCTCCCTCTCTTGCGTCAACTATCGGACCTATCTGATCG
CTCTGTGGACGAAGAAATTCTACTGAGGCAGGGGAAGCTGGAGCGGCAGC
AGCTCGGGGCCAGCCCGGCCTCAGCGGCAGCGGCGGGTGCAGGAGGCGGA
GGAAAATCAGCAGCGGTGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCAGC
GGCAGCGAGCGGCTCTGTAGCAGCAGGGCACGCTCCTGGTGCCTCTGCGG
CTGCAAGCAGCGGCGCGGATCACGGTGGCACGACGGACGGGGTCGAGCGC
GTCCGCCTTGACGCCGAGAGACAGATTCTGTTAACCATGCTGCTCGCGCA
CATGTGCTCCGAGCATGACGCCACGCCCAGGACGTTCGTTGAGCAGGTAG
GCAAGGGAGCGGGGCTACCTCTCTTTTGAGCGTGTAACAGCAGCGGCATA
TTTTGACCCGAAAGGGCGTATTCTTTGGTATGTGTTGTTGTGTTGACTGC
TGTAGTGACTGGTCCCAGCCAAACCAGCGGGTGTGGGTGAGCGTGTGCCT
TGTAATCAACCGCTTTGAGTTGCTCGGCGACAAGAAGCGTTGCTTAGCTA
AGCAGCTAGCTTGACGTGCGACGTGCTTGCTGGGTCAGGGGCGGGCCACG
ATGATATGGGTGTAGCAGCAGAACACAGTGAAATGTTTTCCTTGCTGGGA
AGGTGTCTGTAGACTTTCGGTTCAATATACGTACTTCGTGTAACATAAGT
GGTTTTGATCGCGCGAGAGACGACTTGAACGACGTTTTCAATCGTGTGTC
CCCAAACCTGCGCAGCACGCTGCGTGTCTGTTGGCGGATAAAATTCGATC
TCCCAAGGTTGCTCGCTCTTCCTATCGCTTCTTCGGTCTTCGTAACCACC
TGACACCGTTCAGATATTTATTAATTTGGTACATTTCACACATCTCATTC
GTTGAACGTTGCTCAACAAGAGGGACGAGTACATCGCACACACACGACCT
TAAGATGCATTAACAGCGGTACAGCAGCGCTGAATACTTTGCATCTTTGG
CATTTTCGTTGTTGTGTCGCTCTGTCCTACGTATTCACGCAAAAGGTGCT
GGTGCTCTACGAGGCGAAGGTGCTGGACTCCATCCAGTTCCTCTTCGACC
TGGGCTTCGTACCCCCCGTGGCCCTTCCCTCGTACCGCACGCCCCCCGAT
CGCGCCGCCGTCGTCGAGGCCGTGCGGCGCCAGATTAACCGCGGGGGCCA
GCAGGGCGACACGTTGCTGTTGGGCGCGTGGCCGAGTGGACCGCCGGCGC
GTGCGGCGGCGGCGGCGGTGTCTGAGGCGAGCGGTGGGGGCGATGGCGTG
GACAGGGGCAGGCGGTCGGCGACGCCGCTAGGGTTACGGGTGCTCGGCAC
GTCGAGGTGTGAACGCTTGAACGGGCAGGGATGTACAATTACGAACAATT
GCATGTATTTATAATGTACTCCTTTCGTGGCTTTCAGTTGATGGCTCACC
TGAATGTGGTAAACAGTAGCATACGCTTGCGCTGAGGGTTGCAAGACAGT
TCTGTTGCGTCTACCACACTTTTACTACACTTGAATGTCTCCGCACTTCG
TCGAATTTCCGCCTGACTTGCACCTTTTTGTTTTGCTCGCTCCGTACCAT
TGTGCTGTACGTGTATGACGGCCGCGTGTTTGTATCTAGGTACTGGCGGG
ATTTCGACGAAGAGGGCTTGATCGCTAGGGGTTCGTTCGGAGACGTCTAC
CGCACGCGCCACCGCTTGGATGGCACGAGGTGAGAACCAAGGAGGAAAAA
ACAAATCCCGATAGGGATTCGAGAAAGCCTTTGTCCGCGGTTCTTGCAAA
CAAGGGGCACCACTTGCTCAACGCTTTGAACAAGTAACCTATCGTGAAAT
ATTGCCGTAAGCCGTGACGATATCCATTTGTCCGTGCCCTTTCTTCTCCC
CCGGCTCCTTTGCTCCTTCTCCGGGTGTGTTGTGCCGCCCCCCCTGCTCA
ACACGTGCATCGTATGTATAACAGGTACGCCATCAAGAAGGTGGTATTCC
GCGGGACCGGTGTGTCCAATCCCCGGGCGCAGGCCGTGATGCGGGAGGTC
CAGTGCCTGGCCCAGCTCGACCACAAGAACATCGTCCGCTACCACACCTC
CTGGCTGGAGAGCAGCTGGGTGGAGAACGGCATGGGCTACCCTCACGCCG
GCGGCGGCGGCGGTGGCGACCCCAACGTCGCGGCCACCGCCGCCGCCGCC
ACCGCCGCCGCCGCTGCGGCAGGGGCGGGGGCGGTAGGCTTGGGCGCGAG
CGCGGACGTCTCCCTCCGCGATCGCATGGACGCCCTGGTGCCGGCCCACA
TGCAGTCTCAGCTCATCAAGGGGCTGGAGACCATGGTGCGGTCGGGAAAC
TCGGCGTCCGACTCCGGCTCCGGGTGGGGCTGGGGTGCGGAGAGCGACGG
GGGTTTCGACGGCGACGCGGAGTTCGGCGCCACGAGGAGGGGCCCGCCGC
GCGGCGGGCGCCATCATAATCAAGGTGCAGCAGCTGGTACCGGTGCTAGT
GCTGGTGCCGGCGGTCACGGCAGGGGTGGCGGGCTGCTCTGGGGCAGCCG
CCGTGGGGACCGCCGCAGTTCCATGTCCCCCCAGGTCCGGTCTCCGAAGC
ACCTCATCGTTCCCGTCGGCGGCGGCCGCGACCGGGGCTTCAGCCGGTGG
TCGGCGGAGGATGTGGAGAGCGAGACGAGCAGGTGGAGCGAAGCGTCCTC
GTACGCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5840:5022..8778+

>mRNA_Ecto-sp13_S_contig5840.16317.1 ID=mRNA_Ecto-sp13_S_contig5840.16317.1|Name=mRNA_Ecto-sp13_S_contig5840.16317.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1770bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5840:5022..8778+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTGTGCCTGATATTCGTTGTTGCTTTCGTCCGTGGGTCGGCCTGGAT
GCCAGGGGATCGCGGGCGAGCGACGCACCACGCAACGCCGTCGTGCGGCA
GCAGTGGAGGCATCGCTCTGCGGCAAAGCAAGGGCGCGTCGAGAGGAATG
TCGCACGTAAATTGGAAGCTGGGTGAACAATGGGATGGTATCAGCGAAGC
AGGAGGTGGAAGGCAGCAGCAAAAGCAGCAGCAGCAGCATCATGAAGGGT
TTCTCCCTCTCTTGCGTCAACTATCGGACCTATCTGATCGCTCTGTGGAC
GAAGAAATTCTACTGAGGCAGGGGAAGCTGGAGCGGCAGCAGCTCGGGGC
CAGCCCGGCCTCAGCGGCAGCGGCGGGTGCAGGAGGCGGAGGAAAATCAG
CAGCGGTGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCAGCGGCAGCGAGC
GGCTCTGTAGCAGCAGGGCACGCTCCTGGTGCCTCTGCGGCTGCAAGCAG
CGGCGCGGATCACGGTGGCACGACGGACGGGGTCGAGCGCGTCCGCCTTG
ACGCCGAGAGACAGATTCTGTTAACCATGCTGCTCGCGCACATGTGCTCC
GAGCATGACGCCACGCCCAGGACGTTCGTTGAGCAGGTGCTGGTGCTCTA
CGAGGCGAAGGTGCTGGACTCCATCCAGTTCCTCTTCGACCTGGGCTTCG
TACCCCCCGTGGCCCTTCCCTCGTACCGCACGCCCCCCGATCGCGCCGCC
GTCGTCGAGGCCGTGCGGCGCCAGATTAACCGCGGGGGCCAGCAGGGCGA
CACGTTGCTGTTGGGCGCGTGGCCGAGTGGACCGCCGGCGCGTGCGGCGG
CGGCGGCGGTGTCTGAGGCGAGCGGTGGGGGCGATGGCGTGGACAGGGGC
AGGCGGTCGGCGACGCCGCTAGGGTTACGGGTGCTCGGCACGTCGAGGTA
CTGGCGGGATTTCGACGAAGAGGGCTTGATCGCTAGGGGTTCGTTCGGAG
ACGTCTACCGCACGCGCCACCGCTTGGATGGCACGAGGTACGCCATCAAG
AAGGTGGTATTCCGCGGGACCGGTGTGTCCAATCCCCGGGCGCAGGCCGT
GATGCGGGAGGTCCAGTGCCTGGCCCAGCTCGACCACAAGAACATCGTCC
GCTACCACACCTCCTGGCTGGAGAGCAGCTGGGTGGAGAACGGCATGGGC
TACCCTCACGCCGGCGGCGGCGGCGGTGGCGACCCCAACGTCGCGGCCAC
CGCCGCCGCCGCCACCGCCGCCGCCGCTGCGGCAGGGGCGGGGGCGGTAG
GCTTGGGCGCGAGCGCGGACGTCTCCCTCCGCGATCGCATGGACGCCCTG
GTGCCGGCCCACATGCAGTCTCAGCTCATCAAGGGGCTGGAGACCATGGT
GCGGTCGGGAAACTCGGCGTCCGACTCCGGCTCCGGGTGGGGCTGGGGTG
CGGAGAGCGACGGGGGTTTCGACGGCGACGCGGAGTTCGGCGCCACGAGG
AGGGGCCCGCCGCGCGGCGGGCGCCATCATAATCAAGGTGCAGCAGCTGG
TACCGGTGCTAGTGCTGGTGCCGGCGGTCACGGCAGGGGTGGCGGGCTGC
TCTGGGGCAGCCGCCGTGGGGACCGCCGCAGTTCCATGTCCCCCCAGGTC
CGGTCTCCGAAGCACCTCATCGTTCCCGTCGGCGGCGGCCGCGACCGGGG
CTTCAGCCGGTGGTCGGCGGAGGATGTGGAGAGCGAGACGAGCAGGTGGA
GCGAAGCGTCCTCGTACGCG
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