mRNA_Ecto-sp13_S_contig584.16315.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig584.16315.1
Unique NamemRNA_Ecto-sp13_S_contig584.16315.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig584.16315.1 vs. uniprot
Match: D8LMP1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMP1_ECTSI)

HSP 1 Score: 162 bits (409), Expect = 9.320e-47
Identity = 87/136 (63.97%), Postives = 102/136 (75.00%), Query Frame = 1 
Query:    1 MKLKGDHGFLLALAISPTSRLVFAQRAGGGLPSAAHHGLKRFAEEDIADAGVGDVYPIDGDDQQGGQDLVDVLEADDQTTVVGDIELGELLCDSLNDAPGASLLRFTISSDTTVIAECTSYSSIDGSVLPDGNTAR 408
            MKL G + FLLAL +       FAQ  GG +PSA  +GL RFAEED+ D GVG V+PI  D+ Q  ++LV+VLE D+ TTVVGDIELG+LLCDSL DA  +SLLRFTISS  TVIAE TSYSSIDGS+LPDGNT +
Sbjct:    1 MKLAGSYCFLLALCVFLADHFSFAQPTGGRVPSAPRYGLARFAEEDVKDTGVGHVHPIPEDEHQVEEELVEVLETDELTTVVGDIELGDLLCDSLEDASDSSLLRFTISSTETVIAERTSYSSIDGSILPDGNTRK 136
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BLAST of mRNA_Ecto-sp13_S_contig584.16315.1 vs. uniprot
Match: A0A6H5JF50_9PHAE (LNR domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF50_9PHAE)

HSP 1 Score: 152 bits (384), Expect = 1.450e-39
Identity = 83/136 (61.03%), Postives = 98/136 (72.06%), Query Frame = 1 
Query:    1 MKLKGDHGFLLALAISPTSRLVFAQRAGGGLPSAAHHGLKRFAEEDIADAGVGDVYPIDGDDQQGGQDLVDVLEADDQTTVVGDIELGELLCDSLNDAPGASLLRFTISSDTTVIAECTSYSSIDGSVLPDGNTAR 408
            MKL G + FLLAL +     L FAQ  GG  PSA  +GL RFAEED+ D GVG ++ I  D+ Q  + LV+VLE D+ T V+GDIELG+LLCDSL DA  +SLLRFTISS  TVIAE TSYSSIDG+VLPDGN  +
Sbjct:   87 MKLAGSYCFLLALCVFLADHLAFAQPTGGRAPSALRYGLARFAEEDVKDTGVGHLHAIPEDEHQVEEGLVEVLETDELTAVMGDIELGDLLCDSLEDATDSSLLRFTISSTETVIAERTSYSSIDGNVLPDGNARK 222
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BLAST of mRNA_Ecto-sp13_S_contig584.16315.1 vs. uniprot
Match: D8LLU0_ECTSI (PKD domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLU0_ECTSI)

HSP 1 Score: 133 bits (335), Expect = 2.370e-34
Identity = 75/136 (55.15%), Postives = 95/136 (69.85%), Query Frame = 1 
Query:    1 MKLKGDHGFLLALAISPTSRLVFAQRAGGGLPSAAHHGLKRFAEEDIADAGVGDVYPIDGDDQQGGQDLVDVLEADDQTTVVGDIELGELLCDSLNDAPGASLLRFTISSDTTVIAECTSYSSIDGSVLPDGNTAR 408
            M+L G  G L A+ ++P  +L  AQ   GG+PSA      RFAEED++D GVG+V+PI  D+++  Q+LV  LE+D Q TVV  I LGELLCDSL DA  ++LLRF ISS  TVIAE TSYSSIDG++ PDG T +
Sbjct:    1 MRLLG--GLLFAVGVAPLLQLTRAQAPDGGIPSATRSVWTRFAEEDVSDVGVGEVHPIASDEEEIEQELVAALESDPQATVVVHIGLGELLCDSLEDASDSTLLRFNISSTETVIAERTSYSSIDGNIFPDGETRK 134
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BLAST of mRNA_Ecto-sp13_S_contig584.16315.1 vs. uniprot
Match: D7FTV1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTV1_ECTSI)

HSP 1 Score: 79.7 bits (195), Expect = 7.760e-15
Identity = 44/53 (83.02%), Postives = 45/53 (84.91%), Query Frame = 1 
Query:  244 VGDIELGELLCDSLNDAPGASLLRFTISSDTTVIAECTSYSSIDGSVLPDGNT 402
            VGDIELGELLCDSL DA  +SLLRFTISS  TVIAE TSYSSIDGSVL DG T
Sbjct:   10 VGDIELGELLCDSLEDAADSSLLRFTISSTETVIAERTSYSSIDGSVLSDGIT 62
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BLAST of mRNA_Ecto-sp13_S_contig584.16315.1 vs. uniprot
Match: D8LCP8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCP8_ECTSI)

HSP 1 Score: 64.3 bits (155), Expect = 6.280e-9
Identity = 31/66 (46.97%), Postives = 46/66 (69.70%), Query Frame = 1 
Query:  199 QDLVDVLEADDQTTVVGDIELGELLCDSLNDAPGASLLRFTISSDTTVIAECTSYSSIDGSVLPDG 396
            ++L + LE D+Q TV+G+++LGELLCDSL  A  A LL+F +S++ T+IA  TSY+ + G     G
Sbjct:  148 KELAETLEVDEQVTVLGEVQLGELLCDSLVQAEDAPLLQFALSANETIIANRTSYTVVSGETFTGG 213
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig584.16315.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LMP1_ECTSI9.320e-4763.97Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JF50_9PHAE1.450e-3961.03LNR domain-containing protein n=2 Tax=Ectocarpus s... [more]
D8LLU0_ECTSI2.370e-3455.15PKD domain protein n=1 Tax=Ectocarpus siliculosus ... [more]
D7FTV1_ECTSI7.760e-1583.02Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LCP8_ECTSI6.280e-946.97Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig584contigEcto-sp13_S_contig584:1757..2918 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size517
Hectar predicted targeting categorysignal peptide
Exons3
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-02_002260.1
Cds size468
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463810.7304335-UTR-Ecto-sp13_S_contig584:1756..18051681463810.7304335-UTR-Ecto-sp13_S_contig584:1756..1805Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig584 1757..1805 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463810.740868-CDS-Ecto-sp13_S_contig584:1805..19371681463810.740868-CDS-Ecto-sp13_S_contig584:1805..1937Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig584 1806..1937 -
1681463810.7509751-CDS-Ecto-sp13_S_contig584:2282..23771681463810.7509751-CDS-Ecto-sp13_S_contig584:2282..2377Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig584 2283..2377 -
1681463810.7613897-CDS-Ecto-sp13_S_contig584:2677..29181681463810.7613897-CDS-Ecto-sp13_S_contig584:2677..2918Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig584 2678..2918 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig584.16315.1prot_Ecto-sp13_S_contig584.16315.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig584 1806..2918 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig584.16315.1

>prot_Ecto-sp13_S_contig584.16315.1 ID=prot_Ecto-sp13_S_contig584.16315.1|Name=mRNA_Ecto-sp13_S_contig584.16315.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=156bp
MKLKGDHGFLLALAISPTSRLVFAQRAGGGLPSAAHHGLKRFAEEDIADA
GVGDVYPIDGDDQQGGQDLVDVLEADDQTTVVGDIELGELLCDSLNDAPG
ASLLRFTISSDTTVIAECTSYSSIDGSVLPDGNTARWADAFDLFSVPMSR
GRGYR*
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mRNA from alignment at Ecto-sp13_S_contig584:1757..2918-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig584.16315.1 ID=mRNA_Ecto-sp13_S_contig584.16315.1|Name=mRNA_Ecto-sp13_S_contig584.16315.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1162bp|location=Sequence derived from alignment at Ecto-sp13_S_contig584:1757..2918- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGTTGAAAGGAGACCACGGGTTCCTGTTGGCCCTAGCCATCTCCCC
TACTTCCCGGCTCGTTTTCGCCCAACGTGCCGGTGGCGGGCTACCGTCAG
CCGCTCATCATGGGTTGAAAAGATTCGCCGAGGAGGACATCGCTGACGCG
GGCGTCGGAGACGTATATCCGATCGATGGAGACGACCAACAAGGCGGACA
AGACCTCGTTGACGTGCTCGAGGCCGATGATCAGACCACTGGTGAGATGG
GAAACCTTGTGGGCGAAACAATCGTGAGGCTGAGAGAGAGAGGAAAGATG
GATGTCCGCGTACTGTAGATCGCTCGCATTTTCGCCATACCAACCACTCA
TGCATACTTTGACCAGACATTCATCGCCAGTGAATTTGCACCAATTACAA
AAACCAGTTCCATTTAGACTGCACTGCGACCGATTGGCGGGCCGCTTGTC
CCCCACCTCGGAAATCCTGTTCCAATCTGCTGTTGGTTGTTCTTTCTAAC
TCCCCCACCATTTTTCGTCCCGAATCGCGCCCTGCTTTCAGTTGTGGGCG
ACATCGAGCTGGGCGAGTTGCTGTGCGACAGCTTGAACGATGCTCCGGGC
GCTAGCCTACTGAGGTTCACGATCAGCTCCGATACGGTGAAAAGGCCAGC
GTAAAGATACGCGCTGTTTGTTTCTTAGGCAAGGTGTAATATCGCGGAAG
AATGCAACAATGAAGCGAGCAAACCTATGTAGTAGACTATTCCAAGTCAC
GACCGTCGCAACACGTTACAACGCAGCGCTCAAGGCGCCTTCAAGGCCTC
TTGTAGGCGCACGAAGAGTCTTCACATTCAAGTCGGGGCGGCACGATCGA
AAGGGTACCACTGAGTTCCAAAAATAAGCGTGTTGCTGTAGGTCACATAG
ATATGCAATTTGTGAATCCTGTCCCTTCGGCGAATACTTCACCTCAACGC
CACGCTACCACGTCGACCCCTTTCGTCGCAGACGGTGATAGCCGAATGTA
CCTCGTACTCGTCCATCGACGGCAGCGTTTTGCCTGACGGAAACACGGCA
AGGTGGGCCGACGCATTCGATCTATTTTCCGTACCTATGTCTCGGGGAAG
GGGATATCGTTAAGGTTGGCTCGGGGCAGGACATATTTTGTGAAGTATTC
GCGCGGGTGAGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig584:1757..2918-

>mRNA_Ecto-sp13_S_contig584.16315.1 ID=mRNA_Ecto-sp13_S_contig584.16315.1|Name=mRNA_Ecto-sp13_S_contig584.16315.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=468bp|location=Sequence derived from alignment at Ecto-sp13_S_contig584:1757..2918- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGTTGAAAGGAGACCACGGGTTCCTGTTGGCCCTAGCCATCTCCCC
TACTTCCCGGCTCGTTTTCGCCCAACGTGCCGGTGGCGGGCTACCGTCAG
CCGCTCATCATGGGTTGAAAAGATTCGCCGAGGAGGACATCGCTGACGCG
GGCGTCGGAGACGTATATCCGATCGATGGAGACGACCAACAAGGCGGACA
AGACCTCGTTGACGTGCTCGAGGCCGATGATCAGACCACTGTTGTGGGCG
ACATCGAGCTGGGCGAGTTGCTGTGCGACAGCTTGAACGATGCTCCGGGC
GCTAGCCTACTGAGGTTCACGATCAGCTCCGATACGACGGTGATAGCCGA
ATGTACCTCGTACTCGTCCATCGACGGCAGCGTTTTGCCTGACGGAAACA
CGGCAAGGTGGGCCGACGCATTCGATCTATTTTCCGTACCTATGTCTCGG
GGAAGGGGATATCGTTAA
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