mRNA_Ecto-sp13_S_contig5833.16307.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5833.16307.1
Unique NamemRNA_Ecto-sp13_S_contig5833.16307.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig5833.16307.1 vs. uniprot
Match: D7FRF2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRF2_ECTSI)

HSP 1 Score: 115 bits (289), Expect = 1.160e-26
Identity = 60/68 (88.24%), Postives = 61/68 (89.71%), Query Frame = 1 
Query:    1 MGGAGHGEAEQSPADLSSVVLVSSLSSTPGRRKSGSGRWATXXXXXGVTQTRMGGVDLGVDDLSAAHW 204
            MGGA HG+AEQSPADLSSVVLVSSLSSTPGRRKSGSGRWA      GVTQTRMGGVDLGVDDLSAAHW
Sbjct:  413 MGGARHGDAEQSPADLSSVVLVSSLSSTPGRRKSGSGRWAKGQGQGGVTQTRMGGVDLGVDDLSAAHW 480
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5833.16307.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FRF2_ECTSI1.160e-2688.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5833contigEcto-sp13_S_contig5833:407..3182 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size592
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-21_002720.2
Cds size591
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463810.2025313-CDS-Ecto-sp13_S_contig5833:406..4491681463810.2025313-CDS-Ecto-sp13_S_contig5833:406..449Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5833 407..449 +
1681463810.2219596-CDS-Ecto-sp13_S_contig5833:1318..15091681463810.2219596-CDS-Ecto-sp13_S_contig5833:1318..1509Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5833 1319..1509 +
1681463810.2336197-CDS-Ecto-sp13_S_contig5833:2269..24161681463810.2336197-CDS-Ecto-sp13_S_contig5833:2269..2416Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5833 2270..2416 +
1681463810.245693-CDS-Ecto-sp13_S_contig5833:2972..31821681463810.245693-CDS-Ecto-sp13_S_contig5833:2972..3182Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5833 2973..3182 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5833.16307.1prot_Ecto-sp13_S_contig5833.16307.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5833 407..3182 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5833.16307.1

>prot_Ecto-sp13_S_contig5833.16307.1 ID=prot_Ecto-sp13_S_contig5833.16307.1|Name=mRNA_Ecto-sp13_S_contig5833.16307.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=197bp
MGGAGHGEAEQSPADLSSVVLVSSLSSTPGRRKSGSGRWATGQGQGGVTQ
TRMGGVDLGVDDLSAAHWELTEAERDLQRREREVDRRERSAAEAEESASQ
TQREAARVRENSERELEKAKAEIYALQVKLQERRAVTPGSRVTPTATAGF
GFRVGIDQTRDSTGGRGAGGAAAAAAAAAAGSRKETGVGGGAVGGKD
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mRNA from alignment at Ecto-sp13_S_contig5833:407..3182+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5833.16307.1 ID=mRNA_Ecto-sp13_S_contig5833.16307.1|Name=mRNA_Ecto-sp13_S_contig5833.16307.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2776bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5833:407..3182+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGGGGGGCGGGGCATGGCGAAGCGGAGCAGAGCCCTGCAGGTGAGAT
CCGTGATCGAGATTTACCCTGTGCTGGCCGGAAAGAAGCGTGTACTCTTC
TGCCTTAAAAAAGGGCGCGGGGCGTGCGGGGGTAATCGTGAAGACGGCGA
CCGTGGTGGCCGGTACCATAGGCGTATCTCATGCCTACAACGCCAAGGCA
GAGCTGTTCGAGGAGGGGGGGGGGGGCTGTAGGCCGGACGGGTAAGCGAA
AGGGGTCCTGTCGTATGTTCGGCCGGCGGAACGCGAATATGGTTGTGGGC
GGCGTAACCGGCGCAGCACCAGCGCCGCTGGCCAGGCGTACGGCTTCCGC
GATCCCGGCGATGCTACCTGCGAGGGAGCGTGGTACACTCACCCGAAACA
AAAGCAGTAACGCAGGCAGGGGGTGGTGCTCTTTCTTGGCGGCAGGGATG
GGCGCCTTGATTCGCACCGCTCTGCGTACCCGATTTTTCGTTCATGTAGA
TCGGCCCACGTCTTTAATGTGGTGATTTTCTGTTTTCTTGGTCTCCGTGT
GGTTCTCTTGTGGCCAACGCGACGGTCAGCCTCGTGCCGTTGTTCGCACC
GCCCTCGACCGTGACCAATGTCGCTGTCCGCGGACATGTCGAACCCGAAG
ACAGCATCACCATTACCACACCGTAGGTACGCGGCGCGGCAGGCTTCCAC
GGGGATAACTCACACAACACACACACCACCTTCGCTCTGTCCAGCGTTCT
CTCACCCCATGTCCCTCCACCGAATCAAGATTTCCAACAAGTGGCGTAGA
AGTTTTTAATTACGTTCTTAACGTTGACGACTTACCCCCCCCCCCCTATC
ACGTAACCCCCCCCCCCCTTTCACCCACCTTGTGTTCCCGTTGTAAACCT
CGGCCGGCGTAGACCTGAGCAGCGTGGTGTTGGTGTCGAGCCTAAGCAGC
ACTCCCGGCCGAAGAAAGAGCGGCTCGGGCCGCTGGGCGACGGGGCAAGG
GCAAGGGGGGGTCACGCAGACCCGAATGGGAGGGGTGGACCTGGGCGTCG
ACGACCTGTCCGCGGCGCACTGGGAACTCACGGAAGCGGAACGGGATCTC
CAGGTGAGATGTTTCCTCCCCACAACCAAAAATTAATACTACTCCAGAGA
GTTTATACAGTGAATAACAAGAAACGTTGGTAGCCATGGGTTGAGTAACG
TGCAGAATTGATTTCGTCAACATGTGGTAGCCATCGTTGCACATACGAAT
GTAGGAGAAGAATACGATCTGAGCGAGTTTCTTGCTGGTGGTCGAACAGC
AAGAAACGACACTACGGATACGACCCTTTCTATCTTGGGTCGTCCCTTTC
TTCTCCCCTGCGGTGACACTCTCTCTCTCTCTCTTCTGAGGCATTCTCCT
TCAGCCAATCTCAATGAAGGAAAGCCGTCAGCCACCGGTAGTGGGTAAAG
ACTACCGCGACTTGGGCCTCCTTCAACCGAGGGAAGCCTGTGTCCTTGAA
CACCCCTTGAACACCCCTCTCGATTTTTTGGCAGTTGCAAGATCGTTGGG
GGAGGGGGGGAGAGGGGGGGTTCTGCCTGTTGGCGGGCTGTAGGCTTCTA
AGGCGGGCGGGGGACTCCACTCGTATGTATTTGTTGCTAAATAGCAGACG
CGTGATCTACATCCCTCGAGATATTTGCAGTACATCCCAAAGGGTTTCTC
TCGGCACCCAATCAGTAACAAGGTGGTTCAACGCATGCCTCCGACCAGGG
GGTATTTTCCATCTCGAACGTAGTCCCTCTGCGATCGATTGTTTATGAAC
TATGTTTTTTTTTACCAACGACGACATCATCATCATCATCACCATCATCA
ACAACAACAACAGAGGCGGGAGCGCGAGGTCGACCGTCGCGAGCGGAGCG
CCGCGGAGGCCGAAGAGTCCGCCAGCCAAACCCAGCGAGAGGCGGCGCGG
GTCCGGGAGAATTCGGAAAGAGAGCTCGAGAAGGCTAAGGCCGAGATATA
CGCCTTGCAGGTGAGTGAGTAAGGGTGTTAACGACGCCGGTGCTACTTGT
GGTGGTGGTGGTGCACTACTCTGCTGCTGCTGCTGCTGCTGCTGCTTTTG
GAGGTCGTGAGAACGACGATCCCGGGGGGCTCTTTGATGGTGATGATGAC
GATGGAATGAACGATGATGATGATAAAAAGTTTTATTCCCTTCTTTAAGT
GGGCGGCCGCGATGAATAGCCGGCGGGGGGCGGGGGCGTGGACGACAGCT
CTCGGAAAAAACAGCTACGCAGCCTCGCAAAACGGACGTGCACGAAGGCT
TTTTCCCTTGGGCACCACCGTTTCTCCGATCGATCAACGGCCGATTTCGA
TCGATCAACGGCCGAACGCAAATAAACGCACAATTTTGCTGTACCGAATC
AACCCAAGTCCGGAACACACCCACCGCCCGATCTATGAACGGCCGAATCA
CAACATCCACGCAATGCTGTACTGGATCAATCCCAAAACACACTGCACTC
TCGTCGCGTTACTAATTGATAAATACTGCTGTACCGACCAATCCATGACG
ACACGCTTTTGCGAAGGTCAAGCTCCAGGAGAGGAGGGCGGTGACCCCCG
GCTCAAGAGTGACGCCGACCGCGACGGCCGGCTTTGGCTTCCGTGTAGGT
ATCGATCAAACCCGCGACTCGACAGGCGGACGCGGCGCCGGCGGTGCTGC
TGCTGCTGCTGCTGCTGCTGCCGCTGGCTCTCGAAAGGAAACCGGGGTTG
GTGGTGGTGCTGTGGGCGGAAAGGAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5833:407..3182+

>mRNA_Ecto-sp13_S_contig5833.16307.1 ID=mRNA_Ecto-sp13_S_contig5833.16307.1|Name=mRNA_Ecto-sp13_S_contig5833.16307.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=591bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5833:407..3182+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGGGGGGCGGGGCATGGCGAAGCGGAGCAGAGCCCTGCAGACCTGAG
CAGCGTGGTGTTGGTGTCGAGCCTAAGCAGCACTCCCGGCCGAAGAAAGA
GCGGCTCGGGCCGCTGGGCGACGGGGCAAGGGCAAGGGGGGGTCACGCAG
ACCCGAATGGGAGGGGTGGACCTGGGCGTCGACGACCTGTCCGCGGCGCA
CTGGGAACTCACGGAAGCGGAACGGGATCTCCAGAGGCGGGAGCGCGAGG
TCGACCGTCGCGAGCGGAGCGCCGCGGAGGCCGAAGAGTCCGCCAGCCAA
ACCCAGCGAGAGGCGGCGCGGGTCCGGGAGAATTCGGAAAGAGAGCTCGA
GAAGGCTAAGGCCGAGATATACGCCTTGCAGGTCAAGCTCCAGGAGAGGA
GGGCGGTGACCCCCGGCTCAAGAGTGACGCCGACCGCGACGGCCGGCTTT
GGCTTCCGTGTAGGTATCGATCAAACCCGCGACTCGACAGGCGGACGCGG
CGCCGGCGGTGCTGCTGCTGCTGCTGCTGCTGCTGCCGCTGGCTCTCGAA
AGGAAACCGGGGTTGGTGGTGGTGCTGTGGGCGGAAAGGAC
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