mRNA_Ecto-sp13_S_contig5822.16289.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5822.16289.1
Unique NamemRNA_Ecto-sp13_S_contig5822.16289.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5822.16289.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5822contigEcto-sp13_S_contig5822:1696..2307 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size612
Hectar predicted targeting categoryother localisation
Exons1
Cds size396
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463808.9562972-UTR-Ecto-sp13_S_contig5822:1695..18661681463808.9562972-UTR-Ecto-sp13_S_contig5822:1695..1866Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5822 1696..1866 +
1681463808.9782658-UTR-Ecto-sp13_S_contig5822:2262..23071681463808.9782658-UTR-Ecto-sp13_S_contig5822:2262..2307Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5822 2263..2307 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463808.9677286-CDS-Ecto-sp13_S_contig5822:1866..22621681463808.9677286-CDS-Ecto-sp13_S_contig5822:1866..2262Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5822 1867..2262 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5822.16289.1prot_Ecto-sp13_S_contig5822.16289.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5822 1867..2262 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5822.16289.1

>prot_Ecto-sp13_S_contig5822.16289.1 ID=prot_Ecto-sp13_S_contig5822.16289.1|Name=mRNA_Ecto-sp13_S_contig5822.16289.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=132bp
MPVPAARFQECAERESRRDLDLNIDHPVATTSFGAVDCRRRTPVFLGCRE
KTDGLTTLELYIAVCSRAYIALLLGRLLRISRNNMFVKSVQYPMTPIVPE
CFRPFTCGDSLVGLGWVVFIIASSVGLCTMQ*
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mRNA from alignment at Ecto-sp13_S_contig5822:1696..2307+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5822.16289.1 ID=mRNA_Ecto-sp13_S_contig5822.16289.1|Name=mRNA_Ecto-sp13_S_contig5822.16289.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=612bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5822:1696..2307+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCTTTCTCTCCATCGACTGCTGTTCCCCACAGGTGGGGGTGCTGAGTACT
CCACCCCGGGGCGATACTGCTTCGGAGATAGGCTGTGCGACGGGAGACGC
CCATCCCCCGGGCCAAGCGCGACGTCGGATCGTACGTCCCATCCCTTGAA
CAGGAACTGCTACTGGGAATTATGCCTGTACCAGCAGCACGGTTTCAGGA
ATGTGCCGAGCGGGAGTCGCGGCGGGACCTGGACCTAAACATAGACCACC
CCGTTGCCACCACCTCTTTCGGAGCCGTTGACTGTCGTCGAAGAACTCCA
GTTTTCTTGGGATGTCGGGAAAAGACTGACGGCCTAACAACCTTGGAGCT
TTACATTGCAGTTTGTTCTCGTGCGTACATTGCTCTTTTACTTGGTCGCC
TCCTCCGCATTAGCCGTAACAACATGTTCGTCAAATCCGTTCAGTATCCA
ATGACGCCCATTGTACCGGAGTGTTTTCGTCCGTTCACGTGTGGTGACTC
TTTGGTGGGGCTTGGTTGGGTAGTCTTCATTATTGCTTCAAGTGTTGGCC
TGTGCACGATGCAGTAGTTCGTTTTTACTATAATCTGATCTGATGTAGGG
TTCTTCTTCGCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5822:1696..2307+

>mRNA_Ecto-sp13_S_contig5822.16289.1 ID=mRNA_Ecto-sp13_S_contig5822.16289.1|Name=mRNA_Ecto-sp13_S_contig5822.16289.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=396bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5822:1696..2307+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCTGTACCAGCAGCACGGTTTCAGGAATGTGCCGAGCGGGAGTCGCG
GCGGGACCTGGACCTAAACATAGACCACCCCGTTGCCACCACCTCTTTCG
GAGCCGTTGACTGTCGTCGAAGAACTCCAGTTTTCTTGGGATGTCGGGAA
AAGACTGACGGCCTAACAACCTTGGAGCTTTACATTGCAGTTTGTTCTCG
TGCGTACATTGCTCTTTTACTTGGTCGCCTCCTCCGCATTAGCCGTAACA
ACATGTTCGTCAAATCCGTTCAGTATCCAATGACGCCCATTGTACCGGAG
TGTTTTCGTCCGTTCACGTGTGGTGACTCTTTGGTGGGGCTTGGTTGGGT
AGTCTTCATTATTGCTTCAAGTGTTGGCCTGTGCACGATGCAGTAG
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