mRNA_Ecto-sp13_S_contig58209.16285.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig58209.16285.1
Unique NamemRNA_Ecto-sp13_S_contig58209.16285.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig58209.16285.1 vs. uniprot
Match: A0A6H5KNM0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNM0_9PHAE)

HSP 1 Score: 202 bits (514), Expect = 1.780e-57
Identity = 119/148 (80.41%), Postives = 122/148 (82.43%), Query Frame = -3 
Query:   44 HGVAQTAPAGAAQRAPSGMAR*AVHSRVTPHAGTQQGVPPGAVMMPGFSDDAERQARQAALVKVLNDKRFGDAPQKSWTESESGDXXXXXXXSPTSTGSSNVSVEDSSAPSDIGSQSGDVVFEKEIREAMAGGGGAGTRTTNHGKRKA 487
            HGVAQTAPA             AVHSRVTP  GTQQG+PPGAVMMPGFSDDA+RQARQAALVKVLNDKRFGDAPQK WTESESG  XXXXXX       SNVS+EDSSAPSDIGSQSGDVVFEKEIREAM GGGGAGTRTTNHGKRKA
Sbjct:   34 HGVAQTAPAXXXXXXXXXXXXQAVHSRVTPLTGTQQGIPPGAVMMPGFSDDADRQARQAALVKVLNDKRFGDAPQKKWTESESGGDXXXXXXXXXXXXXSNVSLEDSSAPSDIGSQSGDVVFEKEIREAMTGGGGAGTRTTNHGKRKA 181
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BLAST of mRNA_Ecto-sp13_S_contig58209.16285.1 vs. uniprot
Match: A0A6H5K1R8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1R8_9PHAE)

HSP 1 Score: 182 bits (461), Expect = 2.380e-55
Identity = 92/116 (79.31%), Postives = 98/116 (84.48%), Query Frame = -2 
Query:  102 AGTERHGPLGRSQQGYPPCRYATGGATWRGDDAGLLGRR*TASSSGGLSKGSERQAIW*RPTKKLDRVGERRXXXXXGGQPDVNWQQQCVGRGQFSSVGYRLTVGRCRVRKGNSGS 449
            +GTERHGP GRSQQGYP  RY TGGATWRGD+AGLLGRR + SSSGG SKGS+RQAI  RPTKKL+RVGERR     GGQPDV WQQQC GRGQFSSVG+  TVGRCRVRKGNSGS
Sbjct:   23 SGTERHGPPGRSQQGYPTSRYTTGGATWRGDNAGLLGRRCSVSSSGGRSKGSQRQAISRRPTKKLERVGERRRRRG-GGQPDVKWQQQCFGRGQFSSVGHWPTVGRCRVRKGNSGS 137
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BLAST of mRNA_Ecto-sp13_S_contig58209.16285.1 vs. uniprot
Match: A0A6H5JWQ7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWQ7_9PHAE)

HSP 1 Score: 184 bits (467), Expect = 1.770e-53
Identity = 110/133 (82.71%), Postives = 112/133 (84.21%), Query Frame = -3 
Query:   89 HGVAQTAPAGAAQRAPSGMAR*AVHSRVTPHAGTQQGVPPGAVMMPGFSDDAERQARQAALVKVLNDKRFGDAPQKSWTESESGDXXXXXXXSPTSTGSSNVSVEDSSAPSDIGSQSGDVVFEKEIREAMAGG 487
            HGVAQTAPA             AVHSRVTPH GTQQGVPPGAVMMPGFSDDA+RQARQAALVKVLNDKRFGDAPQK+WTESESGDXXXXXXX     GSSNVSVEDSSA SDIGSQSGDVVFEKEIREAM GG
Sbjct:   34 HGVAQTAPAXXXXXXXXXXXXQAVHSRVTPHTGTQQGVPPGAVMMPGFSDDADRQARQAALVKVLNDKRFGDAPQKNWTESESGDXXXXXXXXXXXXGSSNVSVEDSSALSDIGSQSGDVVFEKEIREAMTGG 166
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BLAST of mRNA_Ecto-sp13_S_contig58209.16285.1 vs. uniprot
Match: A0A6H5J7W8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7W8_9PHAE)

HSP 1 Score: 175 bits (443), Expect = 1.490e-49
Identity = 104/132 (78.79%), Postives = 107/132 (81.06%), Query Frame = -3 
Query:   92 HGVAQTAPAGAAQRAPSGMAR*AVHSRVTPHAGTQQGVPPGAVMMPGFSDDAERQARQAALVKVLNDKRFGDAPQKSWTESESGDXXXXXXXSPTSTGSSNVSVEDSSAPSDIGSQSGDVVFEKEIREAMAG 487
            HGVAQTAPA             AVHSRVTPH GTQQG+PPGAVMMPGFSDDA+RQARQAALVKVLNDKRFGDAPQK WTESESG XXXXXXX       SNVS+EDSSAPSD GSQSGDVVFEKEIREAM G
Sbjct:   34 HGVAQTAPAXXXXXXXXXXXXQAVHSRVTPHTGTQQGIPPGAVMMPGFSDDADRQARQAALVKVLNDKRFGDAPQKKWTESESGGXXXXXXXXXXXXXXSNVSLEDSSAPSDSGSQSGDVVFEKEIREAMTG 165
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BLAST of mRNA_Ecto-sp13_S_contig58209.16285.1 vs. uniprot
Match: A0A6H5JT27_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT27_9PHAE)

HSP 1 Score: 167 bits (423), Expect = 4.970e-49
Identity = 97/115 (84.35%), Postives = 100/115 (86.96%), Query Frame = -3 
Query:   89 MAR*AVHSRVTPHAGTQQGVPPGAVMMPGFSDDAERQARQAALVKVLNDKRFGDAPQKSWTESESGDXXXXXXXSPTSTGSSNVSVEDSSAPSDIGSQSGDVVFEKEIREAMAGG 433
            MAR AVHSRVTP  GTQQG+PPGAVMMPGFSD+A RQARQAALVKVLNDKRFGDAPQK WTESESG  XXXXXX       SNVS+EDSSAPSDIGSQSGDVVFEKEIREAM GG
Sbjct:    1 MARQAVHSRVTPLTGTQQGIPPGAVMMPGFSDNANRQARQAALVKVLNDKRFGDAPQKKWTESESGGDXXXXXXXXXXXXXSNVSLEDSSAPSDIGSQSGDVVFEKEIREAMTGG 115
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BLAST of mRNA_Ecto-sp13_S_contig58209.16285.1 vs. uniprot
Match: A0A6H5KFU0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFU0_9PHAE)

HSP 1 Score: 174 bits (442), Expect = 1.620e-48
Identity = 104/133 (78.20%), Postives = 107/133 (80.45%), Query Frame = -3 
Query:   89 HGVAQTAPAGAAQRAPSGMAR*AVHSRVTPHAGTQQGVPPGAVMMPGFSDDAERQARQAALVKVLNDKRFGDAPQKSWTESESGDXXXXXXXSPTSTGSSNVSVEDSSAPSDIGSQSGDVVFEKEIREAMAGG 487
            HGVAQTAPA             AVHSRVTP  GTQQG+PPGAVMMPGFSDDA+RQARQAALVKVLNDKRFGDAPQK WTESESG  XXXXXX       SNVS+EDSSAPSDIGSQSGDVVFEKEIREAM GG
Sbjct:   34 HGVAQTAPAXXXXXXXXXXXXQAVHSRVTPLTGTQQGIPPGAVMMPGFSDDADRQARQAALVKVLNDKRFGDAPQKKWTESESGGDXXXXXXXXXXXXXSNVSLEDSSAPSDIGSQSGDVVFEKEIREAMTGG 166
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BLAST of mRNA_Ecto-sp13_S_contig58209.16285.1 vs. uniprot
Match: A0A6H5KGN5_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGN5_9PHAE)

HSP 1 Score: 170 bits (430), Expect = 7.170e-48
Identity = 97/115 (84.35%), Postives = 101/115 (87.83%), Query Frame = -3 
Query:   89 MAR*AVHSRVTPHAGTQQGVPPGAVMMPGFSDDAERQARQAALVKVLNDKRFGDAPQKSWTESESGDXXXXXXXSPTSTGSSNVSVEDSSAPSDIGSQSGDVVFEKEIREAMAGG 433
            +AR    SRVTPH GTQQG+PPGAVMMPGFSDDA+RQARQAA VKVLNDKRFGDAPQK+WTESESG  XXXXXX     GSSNVSVEDSSAPSDIGSQSGDVVFEKEIREAM GG
Sbjct:   30 LARPFTASRVTPHTGTQQGIPPGAVMMPGFSDDADRQARQAAFVKVLNDKRFGDAPQKNWTESESGGDXXXXXXXXXXXGSSNVSVEDSSAPSDIGSQSGDVVFEKEIREAMTGG 144
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BLAST of mRNA_Ecto-sp13_S_contig58209.16285.1 vs. uniprot
Match: A0A6H5JSN7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSN7_9PHAE)

HSP 1 Score: 171 bits (432), Expect = 6.300e-47
Identity = 99/122 (81.15%), Postives = 105/122 (86.07%), Query Frame = -3 
Query:    2 GAVMMPGFSDDAERQARQAALVKVLNDKRFGDAPQKSWTESESGDXXXXXXXSPTSTGSSNVSVEDSSAPSDIGSQSGDVVFEKEIREAMAGGGGAGTRTTNHGKRKASAGGSVGGKNKAAA 367
            GA MMPGFSDDA RQARQAA+ KVLNDKRF DAPQ++W+ESESGD       SPTS+GSSNVS+EDSSAPSDI SQSGDVVFEKEIREAM GGGGAG RT NHGKRKASAGGSV GK KAAA
Sbjct:   43 GAGMMPGFSDDAARQARQAAVAKVLNDKRFCDAPQRNWSESESGDDNDGEG-SPTSSGSSNVSIEDSSAPSDICSQSGDVVFEKEIREAMTGGGGAGARTKNHGKRKASAGGSVVGKYKAAA 163
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BLAST of mRNA_Ecto-sp13_S_contig58209.16285.1 vs. uniprot
Match: A0A6H5K825_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K825_9PHAE)

HSP 1 Score: 160 bits (406), Expect = 3.730e-46
Identity = 101/162 (62.35%), Postives = 116/162 (71.60%), Query Frame = -3 
Query:   26 HGVAQTAPAGAAQR--APSGMAR*AVHSRVTPHAGTQQGVPPGAVMMPGFSDDAERQARQAALVKVLNDKRFGDAPQKSWTESESGDXXXXXXXSPTSTGSSNVSVEDSSAPSDIGSQ------SGDVVFEKEIREAMAGGGGAGTRTTNHGKRKASAGGSV 487
            HGVAQ  PAGA Q   APSGM R AVHSRVTPH  TQQGVPPGA +MPG  D    +AR+ A+  +LNDK+FG+A  K+W+ES+S D       +P S+GSSNVSVE+SS PSDIGSQ      SGD VF KEIREA+ GGGGAG + T H KRKASAGGS 
Sbjct:   34 HGVAQITPAGAVQLQPAPSGMVRQAVHSRVTPHTDTQQGVPPGAGLMPGLMDTEGTKARRVAVSMILNDKQFGEASGKNWSESDSSDDDNGKD-APMSSGSSNVSVEESSVPSDIGSQEPGDVESGDSVFAKEIREAIFGGGGAGRKKT-HRKRKASAGGSA 193
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BLAST of mRNA_Ecto-sp13_S_contig58209.16285.1 vs. uniprot
Match: A0A6H5KKV3_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KKV3_9PHAE)

HSP 1 Score: 161 bits (408), Expect = 2.630e-43
Identity = 102/162 (62.96%), Postives = 117/162 (72.22%), Query Frame = -3 
Query:   26 HGVAQTAPAGAAQR--APSGMAR*AVHSRVTPHAGTQQGVPPGAVMMPGFSDDAERQARQAALVKVLNDKRFGDAPQKSWTESESGDXXXXXXXSPTSTGSSNVSVEDSSAPSDIGSQ------SGDVVFEKEIREAMAGGGGAGTRTTNHGKRKASAGGSV 487
            HGVAQ  PAGA Q   APSGM R AVHSRVTPH  TQQGVPPGA +MPG  D    +AR+ A+  +LNDK+FG+A  K+W+ES+S D       +P S+GSSNVSVE+SSAPSDI SQ      SGD VF KEIREA+ GGGGAG + T HGKRKASAGGS 
Sbjct:   34 HGVAQITPAGAVQLQPAPSGMVRQAVHSRVTPHTDTQQGVPPGAGLMPGLMDTEGTKARRVAVSMILNDKQFGEASGKNWSESDSSDDDNGKD-APMSSGSSNVSVEESSAPSDIISQEPGDVESGDSVFAKEIREAIFGGGGAGRKKT-HGKRKASAGGSA 193
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig58209.16285.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KNM0_9PHAE1.780e-5780.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K1R8_9PHAE2.380e-5579.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWQ7_9PHAE1.770e-5382.71Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J7W8_9PHAE1.490e-4978.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JT27_9PHAE4.970e-4984.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFU0_9PHAE1.620e-4878.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KGN5_9PHAE7.170e-4884.35Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JSN7_9PHAE6.300e-4781.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K825_9PHAE3.730e-4662.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KKV3_9PHAE2.630e-4362.96Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig58209contigEcto-sp13_S_contig58209:365..853 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size489
Hectar predicted targeting categorymitochondrion
Exons1
Cds size405
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463808.8015983-CDS-Ecto-sp13_S_contig58209:364..7691681463808.8015983-CDS-Ecto-sp13_S_contig58209:364..769Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig58209 365..769 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463808.8128934-UTR-Ecto-sp13_S_contig58209:769..8531681463808.8128934-UTR-Ecto-sp13_S_contig58209:769..853Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig58209 770..853 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig58209.16285.1prot_Ecto-sp13_S_contig58209.16285.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig58209 365..769 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig58209.16285.1

>prot_Ecto-sp13_S_contig58209.16285.1 ID=prot_Ecto-sp13_S_contig58209.16285.1|Name=mRNA_Ecto-sp13_S_contig58209.16285.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=135bp
MLLLCSSLRRCRRRSPSACRGLWSSCPLPLPRPLLPEFPFRTRHLPTVSR
YPTELNCPLPTHCCCQLTSGCPPPRRRRRRSPTRSNFFVGRHQIACRSEP
LLRPPDELAVQRRPRSPASSPRQVAPPVAYRHGG*
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mRNA from alignment at Ecto-sp13_S_contig58209:365..853+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig58209.16285.1 ID=mRNA_Ecto-sp13_S_contig58209.16285.1|Name=mRNA_Ecto-sp13_S_contig58209.16285.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=489bp|location=Sequence derived from alignment at Ecto-sp13_S_contig58209:365..853+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTGCTGCTTTGTTCTTCCCTCCGACGCTGCCGCCGGCGCTCGCCTTC
CGCTTGCCGTGGTTTGTGGTCCTCGTGCCCGCTCCCCCTCCCCCGGCCAT
TGCTTCCCGAATTTCCTTTTCGAACACGACATCTCCCGACTGTGAGCCGA
TATCCGACGGAGCTGAACTGTCCTCTACCGACACATTGCTGCTGCCAGTT
GACGTCGGGCTGCCCCCCCCCTCGTCGTCGTCGTCGCCGCTCTCCGACTC
GGTCCAACTTTTTTGTGGGGCGTCACCAAATCGCTTGTCGTTCAGAACCT
TTACTAAGGCCGCCTGACGAGCTTGCCGTTCAGCGTCGTCCGAGAAGCCC
GGCATCATCACCGCGCCAGGTGGCACCCCCTGTTGCGTACCGGCATGGGG
GGTAACCCTGCTGTGAACGGCCTAGCGGGCCATGCCGCTCGGTGCCCGCT
GTGCCGCGCCAGCAGGCGCGGTCTGGGCGACCCCATGCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig58209:365..853+

>mRNA_Ecto-sp13_S_contig58209.16285.1 ID=mRNA_Ecto-sp13_S_contig58209.16285.1|Name=mRNA_Ecto-sp13_S_contig58209.16285.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=405bp|location=Sequence derived from alignment at Ecto-sp13_S_contig58209:365..853+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTGCTGCTTTGTTCTTCCCTCCGACGCTGCCGCCGGCGCTCGCCTTC
CGCTTGCCGTGGTTTGTGGTCCTCGTGCCCGCTCCCCCTCCCCCGGCCAT
TGCTTCCCGAATTTCCTTTTCGAACACGACATCTCCCGACTGTGAGCCGA
TATCCGACGGAGCTGAACTGTCCTCTACCGACACATTGCTGCTGCCAGTT
GACGTCGGGCTGCCCCCCCCCTCGTCGTCGTCGTCGCCGCTCTCCGACTC
GGTCCAACTTTTTTGTGGGGCGTCACCAAATCGCTTGTCGTTCAGAACCT
TTACTAAGGCCGCCTGACGAGCTTGCCGTTCAGCGTCGTCCGAGAAGCCC
GGCATCATCACCGCGCCAGGTGGCACCCCCTGTTGCGTACCGGCATGGGG
GGTAA
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